P27635 (RL10_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 124.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: 60S ribosomal protein L10 Alternative name(s): Laminin receptor homolog Protein QM Tumor suppressor QM | ||||
| Gene names |
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| Organism | Homo sapiens (Human) | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 214 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Subunit structure | Component of the large ribosomal subunit. Mature ribosomes consist of a small (40S) and a large (60S) subunit. The 40S subunit contains about 33 different proteins and 1 molecule of RNA (18S). The 60S subunit contains about 49 different proteins and 3 molecules of RNA (28S, 5.8S and 5S). |
| Developmental stage | Down-regulated during adipocyte, kidney, and heart differentiation. |
| Involvement in disease | Defects in RPL10 are a cause of susceptibility to autism X-linked type 5 (AUTSX5) [MIM:300847]. A complex multifactorial, pervasive developmental disorder characterized by impairments in reciprocal social interaction and communication, restricted and stereotyped patterns of interests and activities, and the presence of developmental abnormalities by 3 years of age. Most individuals with autism also manifest moderate mental retardation. Note=RPL10 is involved in autism only in rare cases. Two hypomorphic variants affecting the translation process have been found in families with autism spectrum disorders, suggesting that aberrant translation may play a role in disease mechanisms. Ref.20 Ref.21 |
| Sequence similarities | Belongs to the ribosomal protein L10e family. |
| Sequence caution | The sequence AAB22173.1 differs from that shown. Reason: Frameshift at position 124. The sequence CAM45852.1 differs from that shown. Reason: Erroneous gene model prediction. The sequence CAM45853.1 differs from that shown. Reason: Erroneous gene model prediction. |
Ontologies
| Keywords | |
|---|---|
| Coding sequence diversity | Polymorphism |
| Disease | Disease mutation |
| Molecular function | Ribonucleoprotein Ribosomal protein |
| PTM | Acetylation Isopeptide bond Ubl conjugation |
| Technical term | 3D-structure Complete proteome Direct protein sequencing Reference proteome |
| Gene Ontology (GO) | |
| Biological process | endocrine pancreas development Traceable author statement. Source: Reactome mRNA metabolic processTraceable author statement. Source: Reactome translational elongationTraceable author statement. Source: Reactome translational terminationTraceable author statement. Source: Reactome viral transcriptionTraceable author statement. Source: Reactome |
| Cellular component | cytosolic large ribosomal subunit Inferred from direct assay Ref.15. Source: UniProtKB endoplasmic reticulumInferred from direct assay. Source: LIFEdb |
| Molecular function | structural constituent of ribosome Non-traceable author statement Ref.15. Source: UniProtKB |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||||||||||||||||||||
Molecule processing | |||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Initiator methionine | 1 | 1 | Removed Ref.15 | ||||||||||||||||||||||||||
| Chain | 2 – 214 | 213 | 60S ribosomal protein L10 | PRO_0000147105 | |||||||||||||||||||||||||
Amino acid modifications | |||||||||||||||||||||||||||||
| Modified residue | 121 | 1 | N6-acetyllysine Ref.17 | ||||||||||||||||||||||||||
| Modified residue | 208 | 1 | N6-acetyllysine Ref.17 | ||||||||||||||||||||||||||
| Cross-link | 188 | Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) Ref.16 | |||||||||||||||||||||||||||
Natural variations | |||||||||||||||||||||||||||||
| Natural variant | 202 | 1 | N → S. Ref.1 Ref.2 Ref.3 Ref.4 Ref.6 Ref.7 Ref.8 Ref.10 Ref.12 Ref.14 Corresponds to variants rs4909 [ dbSNP | Ensembl ] and rs12012747 [ dbSNP | Ensembl ]. | VAR_006922 | |||||||||||||||||||||||||
| Natural variant | 206 | 1 | L → M in AUTSX5. Ref.20 | VAR_027795 | |||||||||||||||||||||||||
| Natural variant | 213 | 1 | H → Q in AUTSX5. Ref.20 Ref.21 | VAR_027796 | |||||||||||||||||||||||||
Experimental info | |||||||||||||||||||||||||||||
| Sequence conflict | 23 | 1 | Missing in AAL88713. Ref.5 | ||||||||||||||||||||||||||
| Sequence conflict | 157 | 1 | F → L in BAD97029. Ref.8 | ||||||||||||||||||||||||||
Secondary structure | |||||||||||||||||||||||||||||
Helix Strand Turn | |||||||||||||||||||||||||||||
| Turn | 43 – 45 | 3 | |||||||||||||||||||||||||||
| Beta strand | 48 – 54 | 7 | |||||||||||||||||||||||||||
| Beta strand | 58 – 61 | 4 | |||||||||||||||||||||||||||
| Helix | 62 – 80 | 19 | |||||||||||||||||||||||||||
| Beta strand | 84 – 89 | 6 | |||||||||||||||||||||||||||
| Beta strand | 126 – 129 | 4 | |||||||||||||||||||||||||||
| Beta strand | 133 – 140 | 8 | |||||||||||||||||||||||||||
| Helix | 142 – 144 | 3 | |||||||||||||||||||||||||||
| Helix | 145 – 155 | 11 | |||||||||||||||||||||||||||
| Helix | 156 – 158 | 3 | |||||||||||||||||||||||||||
| Beta strand | 159 – 161 | 3 | |||||||||||||||||||||||||||
| Beta strand | 163 – 169 | 7 | |||||||||||||||||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "The isolation and characterization of a novel cDNA demonstrating an altered mRNA level in nontumorigenic Wilms' microcell hybrid cells." Dowdy S.F., Lai K.M., Weissman B.E., Matsui Y., Hogan B.L.M., Stanbridge E.S. Nucleic Acids Res. 19:5763-5769(1991) [PubMed: 1658743] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA], VARIANT SER-202. |
| [2] | "Identification and characterization of a new gene in the human Xq28 region." van den Ouweland A.M.W., Kioschis P., Verdijk M., Tamanini F., Toniolo D., Poustka A., van Oost B.A. Hum. Mol. Genet. 1:269-273(1992) [PubMed: 1303197] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], VARIANT SER-202. |
| [3] | "Sequence analysis of a novel gene expressed in normal and in tumor-derived tissue." Kroepelin M. Submitted (AUG-1991) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA], VARIANT SER-202. Tissue: Mammary gland. |
| [4] | "Genomic organization of a cDNA (QM) demonstrating an altered mRNA level in nontumorigenic Wilms' microcell hybrid cells and its localization to Xq28." Kaneko K., Kobayashi H., Onodera O., Miyatake T., Tsuji S. Hum. Mol. Genet. 1:529-533(1992) [PubMed: 1339145] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], VARIANT SER-202. |
| [5] | "QM, a putative tumor suppressor, regulates proto-oncogene c-Yes." Oh H.S., Kwon H., Sun S.K., Yang C.-H. J. Biol. Chem. 277:36489-36498(2002) [PubMed: 12138090] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA]. |
| [6] | "Loss of heterozygosity and microsatellite instability at the Xq28 and the A/G heterozygosity of the QM gene are associated with ovarian cancer." Shen X.J., Ali-Fehmi R., Weng C.R., Sarkar F.H., Grignon D., Liao D.J. Cancer Biol. Ther. 5:523-528(2006) [PubMed: 16627977] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA], VARIANT SER-202. Tissue: Mammary cancer, Ovarian carcinoma, Pancreatic cancer and Prostatic carcinoma. |
| [7] | "Cloning of human full open reading frames in Gateway(TM) system entry vector (pDONR201)." Halleck A., Ebert L., Mkoundinya M., Schick M., Eisenstein S., Neubert P., Kstrang K., Schatten R., Shen B., Henze S., Mar W., Korn B., Zuo D., Hu Y., LaBaer J. Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANT SER-202. |
| [8] | Suzuki Y., Sugano S., Totoki Y., Toyoda A., Takeda T., Sakaki Y., Tanaka A., Yokoyama S. Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANT SER-202. Tissue: Thymus. |
| [9] | "Long-range sequence analysis in Xq28: thirteen known and six candidate genes in 219.4 kb of high GC DNA between the RCP/GCP and G6PD loci." Chen E.Y., Zollo M., Mazzarella R.A., Ciccodicola A., Chen C.-N., Zuo L., Heiner C., Burough F.W., Ripetto M., Schlessinger D., D'Urso M. Hum. Mol. Genet. 5:659-668(1996) [PubMed: 8733135] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [10] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], VARIANT SER-202. |
| [11] | "The DNA sequence of the human X chromosome." Ross M.T., Grafham D.V., Coffey A.J., Scherer S., McLay K., Muzny D., Platzer M., Howell G.R., Burrows C., Bird C.P., Frankish A., Lovell F.L., Howe K.L., Ashurst J.L., Fulton R.S., Sudbrak R., Wen G., Jones M.C. Bentley D.R.Nature 434:325-337(2005) [PubMed: 15772651] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [12] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANT SER-202. Tissue: Brain, Mammary gland and Placenta. |
| [13] | "cDNA cloning and genomic analysis of a new multigene family sharing common phylogenetic and expression profiles with the laminin receptor gene." Bignon C., Roux-Dosseto M., Zeigler M.E., Wicha M.S., Martin P.M. Biochem. Biophys. Res. Commun. 184:1165-1172(1992) [PubMed: 1534224] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 1-147. |
| [14] | "A map of 75 human ribosomal protein genes." Kenmochi N., Kawaguchi T., Rozen S., Davis E., Goodman N., Hudson T.J., Tanaka T., Page D.C. Genome Res. 8:509-523(1998) [PubMed: 9582194] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 135-214, VARIANT SER-202. |
| [15] | "Characterization and analysis of posttranslational modifications of the human large cytoplasmic ribosomal subunit proteins by mass spectrometry and Edman sequencing." Odintsova T.I., Muller E.C., Ivanov A.V., Egorov T.A., Bienert R., Vladimirov S.N., Kostka S., Otto A., Wittmann-Liebold B., Karpova G.G. J. Protein Chem. 22:249-258(2003) [PubMed: 12962325] [Abstract] Cited for: PROTEIN SEQUENCE OF 2-11, MASS SPECTROMETRY. |
| [16] | "Quantitative analysis of global ubiquitination in HeLa cells by mass spectrometry." Meierhofer D., Wang X., Huang L., Kaiser P. J. Proteome Res. 7:4566-4576(2008) [PubMed: 18781797] [Abstract] Cited for: UBIQUITINATION [LARGE SCALE ANALYSIS] AT LYS-188, MASS SPECTROMETRY. |
| [17] | "Lysine acetylation targets protein complexes and co-regulates major cellular functions." Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T., Olsen J.V., Mann M. Science 325:834-840(2009) [PubMed: 19608861] [Abstract] Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-121 AND LYS-208, MASS SPECTROMETRY. |
| [18] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed: 21269460] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [19] | "Crystal structure of human ribosomal protein L10 core domain reveals eukaryote-specific motifs in addition to the conserved fold." Nishimura M., Kaminishi T., Takemoto C., Kawazoe M., Yoshida T., Tanaka A., Sugano S., Shirouzu M., Ohkubo T., Yokoyama S., Kobayashi Y. J. Mol. Biol. 377:421-430(2008) [PubMed: 18258260] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (2.5 ANGSTROMS) OF 34-182. |
| [20] | "Mutations in the ribosomal protein gene RPL10 suggest a novel modulating disease mechanism for autism." Klauck S.M., Felder B., Kolb-Kokocinski A., Schuster C., Chiocchetti A., Schupp I., Wellenreuther R., Schmoetzer G., Poustka F., Breitenbach-Koller L., Poustka A. Mol. Psychiatry 11:1073-1084(2006) [PubMed: 16940977] [Abstract] Cited for: INVOLVEMENT IN SUSCEPTIBILITY TO AUTISM, VARIANTS AUTSX5 MET-206 AND GLN-213. |
| [21] | "Mutation and expression analyses of the ribosomal protein gene RPL10 in an extended German sample of patients with autism spectrum disorder." Chiocchetti A., Pakalapati G., Duketis E., Wiemann S., Poustka A., Poustka F., Klauck S.M. Am. J. Med. Genet. A 155:1472-1475(2011) [PubMed: 21567917] [Abstract] Cited for: VARIANT AUTSX5 GLN-213. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | M64241 mRNA. Translation: AAA63253.1. M81806 Genomic DNA. Translation: AAA36021.1. M73791 mRNA. Translation: AAA36378.1. S64169, S64168 Genomic DNA. Translation: AAB27665.1. AF486812 mRNA. Translation: AAL88713.1. DQ369703 mRNA. Translation: ABC88559.1. DQ369704 mRNA. Translation: ABC88560.1. DQ369705 mRNA. Translation: ABC88561.1. DQ369706 mRNA. Translation: ABC88562.1. DQ369707 mRNA. Translation: ABC88563.1. DQ369708 mRNA. Translation: ABC88564.1. DQ369709 mRNA. Translation: ABC88565.1. DQ369710 mRNA. Translation: ABC88566.1. DQ369711 mRNA. Translation: ABC88567.1. DQ369712 mRNA. Translation: ABC88568.1. DQ369713 mRNA. Translation: ABC88569.1. DQ369714 mRNA. Translation: ABC88570.1. DQ369715 mRNA. Translation: ABC88571.1. DQ369716 mRNA. Translation: ABC88572.1. CR456797 mRNA. Translation: CAG33078.1. CR542069 mRNA. Translation: CAG46866.1. AK223309 mRNA. Translation: BAD97029.1. L44140 Genomic DNA. Translation: AAA92646.1. BX936347, BX936346 Genomic DNA. Translation: CAI43214.1. BX936346, BX936347 Genomic DNA. Translation: CAI43230.1. BX936347, BX936346 Genomic DNA. Translation: CAM45852.1. Sequence problems. BX936346, BX936347 Genomic DNA. Translation: CAM45853.1. Sequence problems. CH471172 Genomic DNA. Translation: EAW72737.1. CH471172 Genomic DNA. Translation: EAW72739.1. BC003358 mRNA. Translation: AAH03358.1. BC026276 mRNA. Translation: AAH26276.1. BC071918 mRNA. Translation: AAH71918.1. S35960 mRNA. Translation: AAB22173.1. Frameshift. AB007170 Genomic DNA. Translation: BAA28595.1. | ||||||||||||
| IPI | IPI00554723. | ||||||||||||
| PIR | A42735. | ||||||||||||
| RefSeq | NP_006004.2. NM_006013.3. | ||||||||||||
| UniGene | Hs.401929. Hs.534404. Hs.657751. | ||||||||||||
3D structure databases | |||||||||||||
| PDBe RCSB PDB PDBj |
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| ProteinModelPortal | P27635. | ||||||||||||
| SMR | P27635. Positions 3-207. | ||||||||||||
| ModBase | Search... | ||||||||||||
Protein-protein interaction databases | |||||||||||||
| DIP | DIP-1133N. | ||||||||||||
| IntAct | P27635. 6 interactions. | ||||||||||||
| MINT | MINT-1153266. | ||||||||||||
| STRING | P27635. | ||||||||||||
PTM databases | |||||||||||||
| PhosphoSite | P27635. | ||||||||||||
Polymorphism databases | |||||||||||||
| DMDM | 148887414. | ||||||||||||
Proteomic databases | |||||||||||||
| PRIDE | P27635. | ||||||||||||
Protocols and materials databases | |||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||
Genome annotation databases | |||||||||||||
| Ensembl | ENST00000344746; ENSP00000341730; ENSG00000147403. ENST00000369817; ENSP00000358832; ENSG00000147403. ENST00000424325; ENSP00000413436; ENSG00000147403. | ||||||||||||
| GeneID | 6134. | ||||||||||||
| KEGG | hsa:6134. | ||||||||||||
| UCSC | uc004fkm.1. human. | ||||||||||||
Organism-specific databases | |||||||||||||
| CTD | 6134. | ||||||||||||
| GeneCards | GC0XP153618. | ||||||||||||
| H-InvDB | HIX0017152. | ||||||||||||
| HGNC | HGNC:10298. RPL10. | ||||||||||||
| HPA | CAB010339. HPA011311. | ||||||||||||
| MIM | 300847. phenotype. 312173. gene. | ||||||||||||
| neXtProt | NX_P27635. | ||||||||||||
| Orphanet | 106. Autism. | ||||||||||||
| PharmGKB | PA34660. | ||||||||||||
| GenAtlas | Search... | ||||||||||||
Phylogenomic databases | |||||||||||||
| eggNOG | prNOG19820. | ||||||||||||
| HOVERGEN | HBG002287. | ||||||||||||
| OrthoDB | EOG4X6C95. | ||||||||||||
| PhylomeDB | P27635. | ||||||||||||
Enzyme and pathway databases | |||||||||||||
| Reactome | REACT_111045. Developmental Biology. REACT_111217. Metabolism. REACT_15380. Diabetes pathways. REACT_17015. Metabolism of proteins. REACT_1762. 3' -UTR-mediated translational regulation. REACT_6167. Influenza Infection. REACT_71. Gene Expression. | ||||||||||||
Gene expression databases | |||||||||||||
| ArrayExpress | P27635. | ||||||||||||
| Bgee | P27635. | ||||||||||||
| CleanEx | HS_RPL10. | ||||||||||||
| Genevestigator | P27635. | ||||||||||||
| GermOnline | ENSG00000147403. Homo sapiens. | ||||||||||||
Family and domain databases | |||||||||||||
| InterPro | IPR001197. Ribosomal_L10e. IPR016180. Ribosomal_L10e/L16. IPR018255. Ribosomal_L10e_CS. [Graphical view] | ||||||||||||
| KO | K02866. | ||||||||||||
| Pfam | PF00252. Ribosomal_L16. 1 hit. [Graphical view] | ||||||||||||
| PIRSF | PIRSF005590. Ribosomal_L10. 1 hit. | ||||||||||||
| SUPFAM | SSF54686. Ribosomal_L10e/L16. 1 hit. | ||||||||||||
| TIGRFAMs | TIGR00279. L10e. 1 hit. | ||||||||||||
| PROSITE | PS01257. RIBOSOMAL_L10E. 1 hit. [Graphical view] | ||||||||||||
| ProtoNet | Search... | ||||||||||||
Other | |||||||||||||
| NextBio | 23827. | ||||||||||||
| PMAP-CutDB | P27635. | ||||||||||||
| SOURCE | Search... | ||||||||||||
Entry information
| Entry name | RL10_HUMAN | ||||||||
| Accession | Primary (citable) accession number: P27635 Secondary accession number(s): A3KQT0 Q8TDA5 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Ribosomal proteins Ribosomal proteins families and list of entries |
| Human chromosome X Human chromosome X: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with