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P27412 (VP2_RHDVF) Reviewed, UniProtKB/Swiss-Prot

Last modified May 29, 2013. Version 42. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Protein VP2
Alternative name(s):
Minor capsid protein
Gene names
ORF Names:ORF2
OrganismRabbit hemorrhagic disease virus (strain Rabbit/Germany/FRG/1989) (Ra/LV/RHDV/GH/1989/GE) (RHDV-FRG) [Reference proteome]
Taxonomic identifier314536 [NCBI]
Taxonomic lineageVirusesssRNA positive-strand viruses, no DNA stageCaliciviridaeLagovirus
Virus hostOryctolagus cuniculus (Rabbit) [TaxID: 9986]

Protein attributes

Sequence length117 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Minor structural protein present in one or two copies per virion. Does not seem to play a role in capsid assembly, but is essential for production of infectious virus By similarity.

Subunit structure

May interact with capsid protein By similarity.

Subcellular location

Virion. Host cytoplasm By similarity.

Miscellaneous

Translated by a ribosomal terminaition-reinitiation process from the bicistronic mRNA coding for VP1 and VP2.

Sequence similarities

Belongs to the lagovirus VP2 protein family.

Ontologies

Keywords
   Cellular componentHost cytoplasm
Virion
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Cellular_componenthost cell cytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

virion

Inferred from electronic annotation. Source: UniProtKB-SubCell

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 117117Protein VP2
PRO_0000100128

Sequences

Sequence LengthMass (Da)Tools
P27412 [UniParc].

Last modified August 1, 1992. Version 1.
Checksum: 838811B8CAB21C46

FASTA11712,670
        10         20         30         40         50         60 
MAFLMSEFIG LGLAGAGVLS NALLRRQELQ LQKQAMENGL VLKADQLGRL GFNPNEVKNV 

        70         80         90        100        110 
IVGNSFSSNV RLSNMHNDAS VVNAYNVYNP ASNGIRKKIK SLNNSVKIYN TTGESSV 

« Hide

References

[1]"Rabbit hemorrhagic disease virus -- molecular cloning and nucleotide sequencing of a calicivirus genome."
Meyers G., Wirblich C., Thiel H.-J.
Virology 184:664-676(1991) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
M67473 Genomic RNA. Translation: AAA47286.1.
PIRVCWWRH. B41039.
RefSeqNP_062876.1. NC_001543.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID1491967.

Family and domain databases

InterProIPR008558. Lagovirus_RHDV_Vp2.
[Graphical view]
PfamPF05801. DUF840. 1 hit.
[Graphical view]
ProDomPD009258. DUF840_lagovir. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetSearch...

Entry information

Entry nameVP2_RHDVF
AccessionPrimary (citable) accession number: P27412
Entry history
Integrated into UniProtKB/Swiss-Prot: August 1, 1992
Last sequence update: August 1, 1992
Last modified: May 29, 2013
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families