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P27381

- VP09_BPPRD

UniProt

P27381 - VP09_BPPRD

Protein

DNA packaging protein

Gene

IX

Organism
Enterobacteria phage PRD1 (Bacteriophage PRD1)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 58 (01 Oct 2014)
      Sequence version 3 (23 Jan 2007)
      Previous versions | rss
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    Functioni

    DNA packaging protein.1 Publication

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Nucleotide bindingi16 – 238ATPSequence Analysis

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW

    GO - Biological processi

    1. viral DNA genome packaging Source: CACAO
    2. viral release from host cell Source: UniProtKB-KW

    Keywords - Biological processi

    Viral genome packaging, Virus exit from host cell

    Keywords - Ligandi

    ATP-binding, Nucleotide-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA packaging protein
    Alternative name(s):
    Protein P9
    Gene namesi
    Name:IX
    OrganismiEnterobacteria phage PRD1 (Bacteriophage PRD1)
    Taxonomic identifieri10658 [NCBI]
    Taxonomic lineageiVirusesdsDNA viruses, no RNA stageTectiviridaeTectivirus
    Virus hostiAcinetobacter calcoaceticus [TaxID: 471]
    Escherichia coli [TaxID: 562]
    Proteus mirabilis [TaxID: 584]
    Pseudomonas aeruginosa [TaxID: 287]
    Pseudomonas fluorescens [TaxID: 294]
    Pseudomonas putida (Arthrobacter siderocapsulatus) [TaxID: 303]
    Salmonella typhimurium [TaxID: 90371]
    Vibrio cholerae [TaxID: 666]
    ProteomesiUP000002143: Genome

    Subcellular locationi

    Virion membrane; Peripheral membrane protein
    Note: Localizes at the unique vertex of the capsid, which extends to the internal membrane via two small integral membrane proteins, P20 and P22. Minor capsid protein P6 attaches to the virion via these proteins and is, in turn, necessary for the attachment of DNA packaging protein P9 to the virion.

    GO - Cellular componenti

    1. virion Source: CACAO
    2. virion membrane Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Membrane, Virion

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11Removed; by host1 Publication
    Chaini2 – 227226DNA packaging proteinPRO_0000165351Add
    BLAST

    Family & Domainsi

    Family and domain databases

    Gene3Di3.40.50.300. 1 hit.
    InterProiIPR027417. P-loop_NTPase.
    [Graphical view]
    SUPFAMiSSF52540. SSF52540. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P27381-1 [UniParc]FASTAAdd to Basket

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    MTIRMPNDRQ RILVLGKTGT GKTCAAVWHL SQKDFKRKAW IVLNHKGDDL    50
    IDSIEGANHV DLNFRPKKPG LYIYHPIPDV DDAEVTQLLW DIHAMGDIGV 100
    YVDEGYMIPN RDPAFQALLT QGRSKKIPMI ILSQRPVWLT RFAISESDFF 150
    QIFQLGDQRD RQTVQGFVPV DLEKLMQAPV NTVPALKKFH SIYYDVGANN 200
    CVIMTPVPTA DAVLARFDLG KKRKQTL 227
    Length:227
    Mass (Da):25,787
    Last modified:January 23, 2007 - v3
    Checksum:i1125CCF088FC0DEB
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AY848689 Genomic DNA. Translation: AAX45927.1.
    PIRiI40477. WMBPQ9.
    RefSeqiNP_040689.1. NC_001421.2.

    Genome annotation databases

    GeneIDi1260942.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AY848689 Genomic DNA. Translation: AAX45927.1 .
    PIRi I40477. WMBPQ9.
    RefSeqi NP_040689.1. NC_001421.2.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 1260942.

    Family and domain databases

    Gene3Di 3.40.50.300. 1 hit.
    InterProi IPR027417. P-loop_NTPase.
    [Graphical view ]
    SUPFAMi SSF52540. SSF52540. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], PROTEIN SEQUENCE OF 2-7.
    2. "A snapshot of viral evolution from genome analysis of the tectiviridae family."
      Saren A.M., Ravantti J.J., Benson S.D., Burnett R.M., Paulin L., Bamford D.H., Bamford J.K.H.
      J. Mol. Biol. 350:427-440(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    3. "In vitro DNA packaging of PRD1: a common mechanism for internal-membrane viruses."
      Stromsten N.J., Bamford D.H., Bamford J.K.H.
      J. Mol. Biol. 348:617-629(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: FUNCTION, CHARACTERIZATION.

    Entry informationi

    Entry nameiVP09_BPPRD
    AccessioniPrimary (citable) accession number: P27381
    Secondary accession number(s): Q3T4N5
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: August 1, 1992
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 58 of the entry and version 3 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programViral Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Direct protein sequencing, Reference proteome

    External Data

    Dasty 3