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Protein

Phosphoglycerate kinase

Gene

PGK

Organism
Plasmodium falciparum (isolate 3D7)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Catalytic activityi

ATP + 3-phospho-D-glycerate = ADP + 3-phospho-D-glyceroyl phosphate.

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei39 – 391SubstrateBy similarity
Binding sitei122 – 1221SubstrateBy similarity
Binding sitei170 – 1701SubstrateBy similarity
Binding sitei215 – 2151ATP
Binding sitei312 – 3121ATP; via carbonyl oxygenBy similarity
Binding sitei343 – 3431ATP
Binding sitei374 – 3741ATP

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi372 – 3754ATPBy similarity

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. phosphoglycerate kinase activity Source: GeneDB_Pfalciparum

GO - Biological processi

  1. glycolytic process Source: GeneDB_Pfalciparum
Complete GO annotation...

Keywords - Molecular functioni

Kinase, Transferase

Keywords - Biological processi

Glycolysis

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Enzyme and pathway databases

BRENDAi2.7.2.3. 4889.
UniPathwayiUPA00109; UER00185.

Names & Taxonomyi

Protein namesi
Recommended name:
Phosphoglycerate kinase (EC:2.7.2.3)
Gene namesi
Name:PGK
ORF Names:PFI1105w
OrganismiPlasmodium falciparum (isolate 3D7)
Taxonomic identifieri36329 [NCBI]
Taxonomic lineageiEukaryotaAlveolataApicomplexaAconoidasidaHaemosporidaPlasmodiumPlasmodium (Laverania)
ProteomesiUP000001450 Componenti: Chromosome 9

Organism-specific databases

EuPathDBiPlasmoDB:PF3D7_0922500.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 416416Phosphoglycerate kinasePRO_0000145859Add
BLAST

Interactioni

Subunit structurei

Monomer.1 Publication

Protein-protein interaction databases

BioGridi1208777. 3 interactions.
IntActiP27362. 3 interactions.
MINTiMINT-1572586.
STRINGi5833.PFI1105w-1.

Structurei

Secondary structure

1
416
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi2 – 43Combined sources
Helixi8 – 103Combined sources
Beta strandi18 – 225Combined sources
Beta strandi33 – 353Combined sources
Helixi38 – 414Combined sources
Helixi44 – 5310Combined sources
Beta strandi56 – 616Combined sources
Helixi73 – 753Combined sources
Helixi78 – 8811Combined sources
Beta strandi93 – 964Combined sources
Beta strandi98 – 1003Combined sources
Helixi101 – 1099Combined sources
Beta strandi114 – 1185Combined sources
Helixi121 – 1233Combined sources
Turni125 – 1284Combined sources
Beta strandi129 – 1324Combined sources
Beta strandi138 – 1403Combined sources
Helixi143 – 15412Combined sources
Beta strandi158 – 1625Combined sources
Helixi165 – 1673Combined sources
Helixi173 – 1764Combined sources
Beta strandi183 – 1853Combined sources
Helixi187 – 20014Combined sources
Beta strandi205 – 2128Combined sources
Helixi217 – 2193Combined sources
Helixi220 – 2278Combined sources
Beta strandi231 – 2366Combined sources
Helixi239 – 24810Combined sources
Turni259 – 2613Combined sources
Helixi262 – 27413Combined sources
Beta strandi278 – 2803Combined sources
Beta strandi283 – 29210Combined sources
Beta strandi297 – 3048Combined sources
Beta strandi311 – 3155Combined sources
Helixi317 – 32812Combined sources
Beta strandi331 – 3377Combined sources
Helixi345 – 3473Combined sources
Helixi349 – 36416Combined sources
Beta strandi367 – 3704Combined sources
Helixi373 – 3819Combined sources
Helixi385 – 3873Combined sources
Beta strandi388 – 3914Combined sources
Helixi396 – 4027Combined sources
Helixi408 – 4114Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1LGImodel-A4-416[»]
1LTKX-ray3.00A/B/C2-416[»]
3OZ7X-ray2.70A/B2-415[»]
3OZAX-ray3.00A/B/C2-416[»]
ProteinModelPortaliP27362.
SMRiP27362. Positions 2-415.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP27362.

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni24 – 263Substrate bindingBy similarity
Regioni63 – 664Substrate bindingBy similarity

Sequence similaritiesi

Belongs to the phosphoglycerate kinase family.Curated

Phylogenomic databases

eggNOGiCOG0126.
HOGENOMiHOG000227107.
InParanoidiP27362.
KOiK00927.
OMAiFPVDYVT.
PhylomeDBiP27362.

Family and domain databases

Gene3Di3.40.50.1260. 1 hit.
3.40.50.1270. 1 hit.
HAMAPiMF_00145. Phosphoglyc_kinase.
InterProiIPR001576. Phosphoglycerate_kinase.
IPR015901. Phosphoglycerate_kinase_C.
IPR015911. Phosphoglycerate_kinase_CS.
IPR015824. Phosphoglycerate_kinase_N.
[Graphical view]
PANTHERiPTHR11406. PTHR11406. 1 hit.
PfamiPF00162. PGK. 1 hit.
[Graphical view]
PIRSFiPIRSF000724. Pgk. 1 hit.
PRINTSiPR00477. PHGLYCKINASE.
SUPFAMiSSF53748. SSF53748. 1 hit.
PROSITEiPS00111. PGLYCERATE_KINASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P27362-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLGNKLSISD LKDIKNKKVL VRVDFNVPIE NGIIKDTNRI TATLPTINHL
60 70 80 90 100
KKEGASKIIL ISHCGRPDGL RNEKYTLKPV AETLKGLLGE EVLFLNDCVG
110 120 130 140 150
KEVEDKINAA KENSVILLEN LRFHIEEEGK GVDANGNKVK ANKEDVEKFQ
160 170 180 190 200
NDLTKLADVF INDAFGTAHR AHSSMVGVKL NVKASGFLMK KELEYFSKAL
210 220 230 240 250
ENPQRPLLAI LGGAKVSDKI QLIKNLLDKV DRMIIGGGMA YTFKKVLNNM
260 270 280 290 300
KIGTSLFDEA GSKIVGEIME KAKAKNVQIF LPVDFKIADN FDNNANTKFV
310 320 330 340 350
TDEEGIPDNW MGLDAGPKSI ENYKDVILTS KTVIWNGPQG VFEMPNFAKG
360 370 380 390 400
SIECLNLVVE VTKKGAITIV GGGDTASLVE QQNKKNEISH VSTGGGASLE
410
LLEGKELPGV LALSNK
Length:416
Mass (Da):45,427
Last modified:August 1, 1992 - v1
Checksum:i91105E552AE944CF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M59249 Genomic DNA. Translation: AAA29727.1.
AL844508 Genomic DNA. Translation: CAD51907.1.
PIRiJU0475.
RefSeqiXP_001352096.1. XM_001352060.1.

Genome annotation databases

EnsemblProtistsiPFI1105w:mRNA; PFI1105w:pep; PFI1105w.
GeneIDi813501.
KEGGipfa:PFI1105w.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M59249 Genomic DNA. Translation: AAA29727.1.
AL844508 Genomic DNA. Translation: CAD51907.1.
PIRiJU0475.
RefSeqiXP_001352096.1. XM_001352060.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1LGImodel-A4-416[»]
1LTKX-ray3.00A/B/C2-416[»]
3OZ7X-ray2.70A/B2-415[»]
3OZAX-ray3.00A/B/C2-416[»]
ProteinModelPortaliP27362.
SMRiP27362. Positions 2-415.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi1208777. 3 interactions.
IntActiP27362. 3 interactions.
MINTiMINT-1572586.
STRINGi5833.PFI1105w-1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsiPFI1105w:mRNA; PFI1105w:pep; PFI1105w.
GeneIDi813501.
KEGGipfa:PFI1105w.

Organism-specific databases

EuPathDBiPlasmoDB:PF3D7_0922500.

Phylogenomic databases

eggNOGiCOG0126.
HOGENOMiHOG000227107.
InParanoidiP27362.
KOiK00927.
OMAiFPVDYVT.
PhylomeDBiP27362.

Enzyme and pathway databases

UniPathwayiUPA00109; UER00185.
BRENDAi2.7.2.3. 4889.

Miscellaneous databases

EvolutionaryTraceiP27362.

Family and domain databases

Gene3Di3.40.50.1260. 1 hit.
3.40.50.1270. 1 hit.
HAMAPiMF_00145. Phosphoglyc_kinase.
InterProiIPR001576. Phosphoglycerate_kinase.
IPR015901. Phosphoglycerate_kinase_C.
IPR015911. Phosphoglycerate_kinase_CS.
IPR015824. Phosphoglycerate_kinase_N.
[Graphical view]
PANTHERiPTHR11406. PTHR11406. 1 hit.
PfamiPF00162. PGK. 1 hit.
[Graphical view]
PIRSFiPIRSF000724. Pgk. 1 hit.
PRINTSiPR00477. PHGLYCKINASE.
SUPFAMiSSF53748. SSF53748. 1 hit.
PROSITEiPS00111. PGLYCERATE_KINASE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Glycolytic pathway of the human malaria parasite Plasmodium falciparum: primary sequence analysis of the gene encoding 3-phosphoglycerate kinase and chromosomal mapping studies."
    Hicks K.E., Read M., Holloway S.P., Sims P.F.G., Hyde J.E.
    Gene 100:123-129(1990) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Isolate 3D7.
  3. "Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13."
    Hall N., Pain A., Berriman M., Churcher C.M., Harris B., Harris D., Mungall K.L., Bowman S., Atkin R., Baker S., Barron A., Brooks K., Buckee C.O., Burrows C., Cherevach I., Chillingworth C., Chillingworth T., Christodoulou Z.
    , Clark L., Clark R., Corton C., Cronin A., Davies R.M., Davis P., Dear P., Dearden F., Doggett J., Feltwell T., Goble A., Goodhead I., Gwilliam R., Hamlin N., Hance Z., Harper D., Hauser H., Hornsby T., Holroyd S., Horrocks P., Humphray S., Jagels K., James K.D., Johnson D., Kerhornou A., Knights A., Konfortov B., Kyes S., Larke N., Lawson D., Lennard N., Line A., Maddison M., Mclean J., Mooney P., Moule S., Murphy L., Oliver K., Ormond D., Price C., Quail M.A., Rabbinowitsch E., Rajandream M.A., Rutter S., Rutherford K.M., Sanders M., Simmonds M., Seeger K., Sharp S., Smith R., Squares R., Squares S., Stevens K., Taylor K., Tivey A., Unwin L., Whitehead S., Woodward J.R., Sulston J.E., Craig A., Newbold C., Barrell B.G.
    Nature 419:527-531(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Isolate 3D7.
  4. "Biochemical characterization and crystallization of recombinant 3-phosphoglycerate kinase of Plasmodium falciparum."
    Pal B., Pybus B., Muccio D.D., Chattopadhyay D.
    Biochim. Biophys. Acta 1699:277-280(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.0 ANGSTROMS) OF 2-416 IN COMPLEX WITH AMP.

Entry informationi

Entry nameiPGK_PLAF7
AccessioniPrimary (citable) accession number: P27362
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 1, 1992
Last sequence update: August 1, 1992
Last modified: April 1, 2015
This is version 102 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.