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Protein

Nucleoprotein

Gene

N

Organism
Hazara virus (isolate JC280)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein

Keywords - Ligandi

RNA-binding, Viral nucleoprotein

Names & Taxonomyi

Protein namesi
Recommended name:
Nucleoprotein
Alternative name(s):
Nucleocapsid protein
Short name:
Protein N
Gene namesi
Name:N
OrganismiHazara virus (isolate JC280)
Taxonomic identifieri11597 [NCBI]
Taxonomic lineageiVirusesssRNA virusesssRNA negative-strand virusesBunyaviridaeNairovirus
Virus hostiIxodes [TaxID: 6944]

Subcellular locationi

  • Virion

  • Note: Internal protein of virus particle.

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Capsid protein, Helical capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002220081 – 485NucleoproteinAdd BLAST485

Structurei

Secondary structure

1485
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi10 – 24Combined sources15
Beta strandi29 – 33Combined sources5
Helixi44 – 52Combined sources9
Helixi56 – 71Combined sources16
Helixi77 – 84Combined sources8
Helixi86 – 99Combined sources14
Helixi103 – 109Combined sources7
Helixi112 – 115Combined sources4
Helixi122 – 139Combined sources18
Helixi145 – 147Combined sources3
Beta strandi156 – 159Combined sources4
Turni162 – 164Combined sources3
Helixi165 – 183Combined sources19
Helixi199 – 208Combined sources10
Helixi212 – 216Combined sources5
Beta strandi228 – 232Combined sources5
Helixi233 – 245Combined sources13
Helixi248 – 266Combined sources19
Helixi268 – 270Combined sources3
Helixi273 – 296Combined sources24
Helixi298 – 303Combined sources6
Helixi309 – 319Combined sources11
Turni324 – 326Combined sources3
Helixi327 – 337Combined sources11
Helixi344 – 353Combined sources10
Beta strandi354 – 356Combined sources3
Helixi357 – 364Combined sources8
Beta strandi368 – 370Combined sources3
Helixi375 – 377Combined sources3
Helixi388 – 395Combined sources8
Helixi403 – 408Combined sources6
Helixi413 – 418Combined sources6
Helixi423 – 425Combined sources3
Helixi428 – 443Combined sources16
Turni446 – 448Combined sources3
Beta strandi449 – 451Combined sources3
Helixi453 – 462Combined sources10
Beta strandi483 – 485Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
5A97X-ray2.70A/B/C/D1-485[»]
SMRiP27318.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Family and domain databases

InterProiIPR003486. Nairo_nucleocap.
[Graphical view]
PfamiPF02477. Nairo_nucleo. 1 hit.
[Graphical view]
PIRSFiPIRSF003950. N_NairoV. 1 hit.

Sequencei

Sequence statusi: Complete.

P27318-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MENKIVASTK EEFNTWYKQF AEKHKLNNKY TESASFCAEI PQLDTYKYKM
60 70 80 90 100
ELASTDNERD AIYSSALIEA TRFCAPIMEC AWASCTGTVK RGLEWFDKNK
110 120 130 140 150
DSDTVKVWDA NYQKLRTETP PAEALLAYQK AALNWRKDVG FSIGEYTSIL
160 170 180 190 200
KKAVAAEYKV PGTVINNIKE MLSDMIRRRN RIINGGSDDA PKRGPVGREH
210 220 230 240 250
LDWCREFASG KFLNAFNPPW GEINKAGKSG YPLLATGLAK LVELEGKDVM
260 270 280 290 300
DKAKASIAQL EGWVKENKDQ VDQDKAEDLL KGVRESYKTA LALAKLSNAF
310 320 330 340 350
RAQGAQIDTV FSSYYWPWKA GVTPVTFPSV SQFLFELGKN PKGQKKMQKA
360 370 380 390 400
LINTPLKWGK RLIELFADND FTENRIYMHP CVLTSGRMSE LGISFGAVPV
410 420 430 440 450
TSPDDAAQGS GHTKAVLNYK TKTEVGNPCA CIISSLFEIQ KAGYDIESMD
460 470 480
IVASEHLLHQ SLVGKRSPFQ NAYLIKGNAT NINII
Length:485
Mass (Da):54,186
Last modified:August 1, 1992 - v1
Checksum:i6053892EB6DB05EC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M86624 Genomic RNA. Translation: AAA43842.1.
PIRiA42990. VHVUHJ.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M86624 Genomic RNA. Translation: AAA43842.1.
PIRiA42990. VHVUHJ.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
5A97X-ray2.70A/B/C/D1-485[»]
SMRiP27318.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

InterProiIPR003486. Nairo_nucleocap.
[Graphical view]
PfamiPF02477. Nairo_nucleo. 1 hit.
[Graphical view]
PIRSFiPIRSF003950. N_NairoV. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiNCAP_HAZVJ
AccessioniPrimary (citable) accession number: P27318
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 1, 1992
Last sequence update: August 1, 1992
Last modified: November 30, 2016
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.