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Protein

Lipopolysaccharide core biosynthesis protein RfaZ

Gene

rfaZ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Pathwayi: LPS core biosynthesis

This protein is involved in the pathway LPS core biosynthesis, which is part of Bacterial outer membrane biogenesis.
View all proteins of this organism that are known to be involved in the pathway LPS core biosynthesis and in Bacterial outer membrane biogenesis.

GO - Biological processi

  • lipopolysaccharide core region biosynthetic process Source: EcoCyc
Complete GO annotation...

Keywords - Biological processi

Lipopolysaccharide biosynthesis

Enzyme and pathway databases

BioCyciEcoCyc:EG11426-MONOMER.
ECOL316407:JW3599-MONOMER.
MetaCyc:EG11426-MONOMER.
UniPathwayiUPA00958.

Protein family/group databases

CAZyiGT73. Glycosyltransferase Family 73.

Names & Taxonomyi

Protein namesi
Recommended name:
Lipopolysaccharide core biosynthesis protein RfaZ
Gene namesi
Name:rfaZ
Ordered Locus Names:b3624, JW3599
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11426. rfaZ.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000972901 – 283Lipopolysaccharide core biosynthesis protein RfaZAdd BLAST283

Proteomic databases

PaxDbiP27241.
PRIDEiP27241.

Interactioni

Protein-protein interaction databases

BioGridi4261610. 243 interactors.
IntActiP27241. 7 interactors.
STRINGi511145.b3624.

Structurei

3D structure databases

ProteinModelPortaliP27241.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4108QD8. Bacteria.
ENOG410XR3T. LUCA.
HOGENOMiHOG000028345.
KOiK12981.
OMAiLSHNIVP.

Family and domain databases

InterProiIPR031026. WaaZ_KDO_III.
[Graphical view]
TIGRFAMsiTIGR04437. WaaZ_KDO_III. 1 hit.

Sequencei

Sequence statusi: Complete.

P27241-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKNIRYIDKK DVENLIENKI SDDVIIFLSG PTSQKTPLSV LRTKDIIAVN
60 70 80 90 100
GSAQYLLSNN IVPFIYVLTD VRFLHQRRDD FYKFSQRSRY TIVNVDVYEH
110 120 130 140 150
ASKEDKLYIL QNCLVLRSFY RREKGGFIKK IKFNILRQIH KELLISVPLS
160 170 180 190 200
KKGRLVGFCK DISLGYCSCH TIAFAAIQIA YSLKYARIIC SGLDLTGSCS
210 220 230 240 250
RFYDENKNPM PSELSRDLFK ILPFFRFMHD NVKDINIYNL SDDTAISYDV
260 270 280
IPFIKLQDIS AEESKDMTRK KMQYRTSTDS YAN
Length:283
Mass (Da):32,920
Last modified:October 1, 1994 - v2
Checksum:i7441DE0DEF192580
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti58S → G in AAA24522 (PubMed:1624462).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M95398 Genomic DNA. Translation: AAA24522.1.
U00039 Genomic DNA. Translation: AAB18601.1.
U00096 Genomic DNA. Translation: AAC76648.1.
AP009048 Genomic DNA. Translation: BAE77668.1.
PIRiS47845.
RefSeqiNP_418081.1. NC_000913.3.
WP_000790279.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76648; AAC76648; b3624.
BAE77668; BAE77668; BAE77668.
GeneIDi948146.
KEGGiecj:JW3599.
eco:b3624.
PATRICi32122735. VBIEscCol129921_3744.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M95398 Genomic DNA. Translation: AAA24522.1.
U00039 Genomic DNA. Translation: AAB18601.1.
U00096 Genomic DNA. Translation: AAC76648.1.
AP009048 Genomic DNA. Translation: BAE77668.1.
PIRiS47845.
RefSeqiNP_418081.1. NC_000913.3.
WP_000790279.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP27241.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261610. 243 interactors.
IntActiP27241. 7 interactors.
STRINGi511145.b3624.

Protein family/group databases

CAZyiGT73. Glycosyltransferase Family 73.

Proteomic databases

PaxDbiP27241.
PRIDEiP27241.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76648; AAC76648; b3624.
BAE77668; BAE77668; BAE77668.
GeneIDi948146.
KEGGiecj:JW3599.
eco:b3624.
PATRICi32122735. VBIEscCol129921_3744.

Organism-specific databases

EchoBASEiEB1396.
EcoGeneiEG11426. rfaZ.

Phylogenomic databases

eggNOGiENOG4108QD8. Bacteria.
ENOG410XR3T. LUCA.
HOGENOMiHOG000028345.
KOiK12981.
OMAiLSHNIVP.

Enzyme and pathway databases

UniPathwayiUPA00958.
BioCyciEcoCyc:EG11426-MONOMER.
ECOL316407:JW3599-MONOMER.
MetaCyc:EG11426-MONOMER.

Miscellaneous databases

PROiP27241.

Family and domain databases

InterProiIPR031026. WaaZ_KDO_III.
[Graphical view]
TIGRFAMsiTIGR04437. WaaZ_KDO_III. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRFAZ_ECOLI
AccessioniPrimary (citable) accession number: P27241
Secondary accession number(s): Q2M7T8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 1, 1992
Last sequence update: October 1, 1994
Last modified: November 2, 2016
This is version 102 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.