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P27210

- CAPSD_TNVD

UniProt

P27210 - CAPSD_TNVD

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Protein

Capsid protein

Gene
ORF4
Organism
Tobacco necrosis virus (strain D) (TNV)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 28 nm in diameter, and consisting of 180 capsid proteins.

GO - Molecular functioni

  1. RNA binding Source: UniProtKB-KW
  2. structural molecule activity Source: InterPro
Complete GO annotation...

Keywords - Ligandi

RNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Capsid protein
Alternative name(s):
p30
Gene namesi
ORF Names:ORF4
OrganismiTobacco necrosis virus (strain D) (TNV)
Taxonomic identifieri12056 [NCBI]
Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageTombusviridaeBetanecrovirus
Virus hostiChenopodium amaranticolor [TaxID: 66262]
Chenopodium quinoa (Quinoa) [TaxID: 63459]
Cucumis sativus (Cucumber) [TaxID: 3659]
Nicotiana clevelandii (Wild tobacco) [TaxID: 81866]
Nicotiana tabacum (Common tobacco) [TaxID: 4097]
Phaseolus vulgaris (Kidney bean) (French bean) [TaxID: 3885]
Tulipa gesneriana (Garden tulip) [TaxID: 13306]

Subcellular locationi

Virion Reviewed prediction

GO - Cellular componenti

  1. T=3 icosahedral viral capsid Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Capsid protein, T=3 icosahedral capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 268268Capsid proteinPRO_0000222870Add
BLAST

Interactioni

Subunit structurei

Homomultimer Reviewed prediction.

Structurei

3D structure databases

ProteinModelPortaliP27210.
SMRiP27210. Positions 79-267.

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni1 – 7777R domain, interaction with RNAAdd
BLAST
Regioni78 – 258181S domain, virion shellAdd
BLAST
Regioni259 – 26810P domain, projecting

Sequence similaritiesi

Family and domain databases

Gene3Di2.60.120.20. 1 hit.
InterProiIPR000937. Capsid_prot_S-dom_vir.
IPR029053. Viral_coat.
[Graphical view]
PfamiPF00729. Viral_coat. 1 hit.
[Graphical view]
PRINTSiPR00233. ICOSAHEDRAL.
PROSITEiPS00555. ICOSAH_VIR_COAT_S. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P27210-1 [UniParc]FASTAAdd to Basket

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MPKRGRVGLA ESFQSKTKKQ KENEYNAFQR EKMERALANN ARAAPKSSGM    50
TFRPLTVPVA GSVIYSRPRV PQVRTNQMST FVVNTELVAN ITLAAAGAFS 100
FTTQPLIPSF GSWLANIADL YSKWRWISCS VVYIPKCPTS TQGSVVMAIV 150
YDAQDTVPTT RTQVSQCYQS ITFPPYAGYG GASALNHKGS GGESLVSTLD 200
TNRVDKRWYS TIGNAAFTAL TSIDKNQFCP ATAIIAGDGG PAAATAVGDI 250
FMRYDIEFIE PVNPSINV 268
Length:268
Mass (Da):29,031
Last modified:August 1, 1992 - v1
Checksum:iB89617074650B0B6
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
D00942 Genomic RNA. Translation: BAA00790.1.
PIRiJU0371. VCWQTD.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
D00942 Genomic RNA. Translation: BAA00790.1 .
PIRi JU0371. VCWQTD.

3D structure databases

ProteinModelPortali P27210.
SMRi P27210. Positions 79-267.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Family and domain databases

Gene3Di 2.60.120.20. 1 hit.
InterProi IPR000937. Capsid_prot_S-dom_vir.
IPR029053. Viral_coat.
[Graphical view ]
Pfami PF00729. Viral_coat. 1 hit.
[Graphical view ]
PRINTSi PR00233. ICOSAHEDRAL.
PROSITEi PS00555. ICOSAH_VIR_COAT_S. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The complete nucleotide sequence of tobacco necrosis virus strain D."
    Coutts R.H.A., Rigden J.E., Slabas A.R., Lomonossoff G.P., Wise P.J.
    J. Gen. Virol. 72:1521-1529(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Entry informationi

Entry nameiCAPSD_TNVD
AccessioniPrimary (citable) accession number: P27210
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 1, 1992
Last sequence update: August 1, 1992
Last modified: July 9, 2014
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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