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P27210 (CAPSD_TNVD) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 49. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length268 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 28 nm in diameter, and consisting of 180 capsid proteins.

Subunit structure

Homomultimer Potential.

Subcellular location

Virion Potential.

Sequence similarities

Belongs to the icosahedral plant coat protein family.

Ontologies

Keywords
   Cellular componentCapsid protein
T=3 icosahedral capsid protein
Virion
   LigandRNA-binding
Gene Ontology (GO)
   Cellular_componentT=3 icosahedral viral capsid

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionRNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

structural molecule activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 268268Capsid protein
PRO_0000222870

Regions

Region1 – 7777R domain, interaction with RNA
Region78 – 258181S domain, virion shell
Region259 – 26810P domain, projecting

Sequences

Sequence LengthMass (Da)Tools
P27210 [UniParc].

Last modified August 1, 1992. Version 1.
Checksum: B89617074650B0B6

FASTA26829,031
        10         20         30         40         50         60 
MPKRGRVGLA ESFQSKTKKQ KENEYNAFQR EKMERALANN ARAAPKSSGM TFRPLTVPVA 

        70         80         90        100        110        120 
GSVIYSRPRV PQVRTNQMST FVVNTELVAN ITLAAAGAFS FTTQPLIPSF GSWLANIADL 

       130        140        150        160        170        180 
YSKWRWISCS VVYIPKCPTS TQGSVVMAIV YDAQDTVPTT RTQVSQCYQS ITFPPYAGYG 

       190        200        210        220        230        240 
GASALNHKGS GGESLVSTLD TNRVDKRWYS TIGNAAFTAL TSIDKNQFCP ATAIIAGDGG 

       250        260 
PAAATAVGDI FMRYDIEFIE PVNPSINV 

« Hide

References

[1]"The complete nucleotide sequence of tobacco necrosis virus strain D."
Coutts R.H.A., Rigden J.E., Slabas A.R., Lomonossoff G.P., Wise P.J.
J. Gen. Virol. 72:1521-1529(1991) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
D00942 Genomic RNA. Translation: BAA00790.1.
PIRVCWQTD. JU0371.

3D structure databases

ProteinModelPortalP27210.
SMRP27210. Positions 79-267.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

Gene3D2.60.120.20. 1 hit.
InterProIPR000937. Capsid_prot_S-dom_vir.
IPR029053. Viral_coat.
[Graphical view]
PfamPF00729. Viral_coat. 1 hit.
[Graphical view]
PRINTSPR00233. ICOSAHEDRAL.
PROSITEPS00555. ICOSAH_VIR_COAT_S. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameCAPSD_TNVD
AccessionPrimary (citable) accession number: P27210
Entry history
Integrated into UniProtKB/Swiss-Prot: August 1, 1992
Last sequence update: August 1, 1992
Last modified: July 9, 2014
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families