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P27210

- CAPSD_TNVD

UniProt

P27210 - CAPSD_TNVD

Protein

Capsid protein

Gene

ORF4

Organism
Tobacco necrosis virus (strain D) (TNV)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 50 (01 Oct 2014)
      Sequence version 1 (01 Aug 1992)
      Previous versions | rss
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    Functioni

    Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 28 nm in diameter, and consisting of 180 capsid proteins.

    GO - Molecular functioni

    1. RNA binding Source: UniProtKB-KW
    2. structural molecule activity Source: InterPro

    Keywords - Ligandi

    RNA-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Capsid protein
    Alternative name(s):
    p30
    Gene namesi
    ORF Names:ORF4
    OrganismiTobacco necrosis virus (strain D) (TNV)
    Taxonomic identifieri12056 [NCBI]
    Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageTombusviridaeBetanecrovirus
    Virus hostiChenopodium amaranticolor [TaxID: 66262]
    Chenopodium quinoa (Quinoa) [TaxID: 63459]
    Cucumis sativus (Cucumber) [TaxID: 3659]
    Nicotiana clevelandii (Wild tobacco) [TaxID: 81866]
    Nicotiana tabacum (Common tobacco) [TaxID: 4097]
    Phaseolus vulgaris (Kidney bean) (French bean) [TaxID: 3885]
    Tulipa gesneriana (Garden tulip) [TaxID: 13306]

    Subcellular locationi

    Virion Curated

    GO - Cellular componenti

    1. T=3 icosahedral viral capsid Source: UniProtKB-KW

    Keywords - Cellular componenti

    Capsid protein, T=3 icosahedral capsid protein, Virion

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 268268Capsid proteinPRO_0000222870Add
    BLAST

    Interactioni

    Subunit structurei

    Homomultimer.Curated

    Structurei

    3D structure databases

    ProteinModelPortaliP27210.
    SMRiP27210. Positions 79-267.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni1 – 7777R domain, interaction with RNAAdd
    BLAST
    Regioni78 – 258181S domain, virion shellAdd
    BLAST
    Regioni259 – 26810P domain, projecting

    Sequence similaritiesi

    Family and domain databases

    Gene3Di2.60.120.20. 1 hit.
    InterProiIPR000937. Capsid_prot_S-dom_vir.
    IPR029053. Viral_coat.
    [Graphical view]
    PfamiPF00729. Viral_coat. 1 hit.
    [Graphical view]
    PRINTSiPR00233. ICOSAHEDRAL.
    PROSITEiPS00555. ICOSAH_VIR_COAT_S. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P27210-1 [UniParc]FASTAAdd to Basket

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    MPKRGRVGLA ESFQSKTKKQ KENEYNAFQR EKMERALANN ARAAPKSSGM    50
    TFRPLTVPVA GSVIYSRPRV PQVRTNQMST FVVNTELVAN ITLAAAGAFS 100
    FTTQPLIPSF GSWLANIADL YSKWRWISCS VVYIPKCPTS TQGSVVMAIV 150
    YDAQDTVPTT RTQVSQCYQS ITFPPYAGYG GASALNHKGS GGESLVSTLD 200
    TNRVDKRWYS TIGNAAFTAL TSIDKNQFCP ATAIIAGDGG PAAATAVGDI 250
    FMRYDIEFIE PVNPSINV 268
    Length:268
    Mass (Da):29,031
    Last modified:August 1, 1992 - v1
    Checksum:iB89617074650B0B6
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    D00942 Genomic RNA. Translation: BAA00790.1.
    PIRiJU0371. VCWQTD.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    D00942 Genomic RNA. Translation: BAA00790.1 .
    PIRi JU0371. VCWQTD.

    3D structure databases

    ProteinModelPortali P27210.
    SMRi P27210. Positions 79-267.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Family and domain databases

    Gene3Di 2.60.120.20. 1 hit.
    InterProi IPR000937. Capsid_prot_S-dom_vir.
    IPR029053. Viral_coat.
    [Graphical view ]
    Pfami PF00729. Viral_coat. 1 hit.
    [Graphical view ]
    PRINTSi PR00233. ICOSAHEDRAL.
    PROSITEi PS00555. ICOSAH_VIR_COAT_S. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The complete nucleotide sequence of tobacco necrosis virus strain D."
      Coutts R.H.A., Rigden J.E., Slabas A.R., Lomonossoff G.P., Wise P.J.
      J. Gen. Virol. 72:1521-1529(1991) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

    Entry informationi

    Entry nameiCAPSD_TNVD
    AccessioniPrimary (citable) accession number: P27210
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: August 1, 1992
    Last sequence update: August 1, 1992
    Last modified: October 1, 2014
    This is version 50 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programViral Protein Annotation Program

    Miscellaneousi

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3