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Protein

ATP synthase subunit delta

Gene

atpH

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

F1F0 ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F1 containing the extramembraneous catalytic core and F0 containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F1 is coupled via a rotary mechanism of the central stalk subunits to proton translocation.UniRule annotation
This protein is part of the stalk that links CF0 to CF1. It either transmits conformational changes from CF0 to CF1 or is implicated in proton conduction.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

ATP synthesis, Hydrogen ion transport, Ion transport, Transport

Names & Taxonomyi

Protein namesi
Recommended name:
ATP synthase subunit deltaUniRule annotation
Alternative name(s):
ATP synthase F(1) sector subunit deltaUniRule annotation
F-type ATPase subunit deltaUniRule annotation
Short name:
F-ATPase subunit deltaUniRule annotation
Gene namesi
Name:atpHUniRule annotation
Synonyms:atpDUniRule annotation
Ordered Locus Names:sll1325
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
ProteomesiUP000001425 Componenti: Chromosome

Subcellular locationi

  • Cellular thylakoid membrane UniRule annotation; Peripheral membrane protein UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

CF(1), Membrane, Thylakoid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 185185ATP synthase subunit deltaPRO_0000193495Add
BLAST

Proteomic databases

PaxDbiP27180.

Interactioni

Subunit structurei

F-type ATPases have 2 components, F1 - the catalytic core - and F0 - the membrane proton channel. F1 has five subunits: alpha3, beta3, gamma1, delta1, epsilon1. CF0 has four main subunits: a1, b1, b'1 and c(10-14). The alpha and beta chains form an alternating ring which encloses part of the gamma chain. F1 is attached to F0 by a central stalk formed by the gamma and epsilon chains, while a peripheral stalk is formed by the delta, b and b' chains.UniRule annotation

Protein-protein interaction databases

IntActiP27180. 1 interaction.
STRINGi1148.sll1325.

Structurei

3D structure databases

ProteinModelPortaliP27180.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ATPase delta chain family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0712.
HOGENOMiHOG000075825.
InParanoidiP27180.
KOiK02113.
OMAiVTTPYAE.
OrthoDBiEOG6DNTDK.
PhylomeDBiP27180.

Family and domain databases

Gene3Di1.10.520.20. 1 hit.
HAMAPiMF_01416. ATP_synth_delta_bact.
InterProiIPR020781. ATPase_OSCP/d_CS.
IPR026015. ATPase_OSCP/delta_N.
IPR000711. ATPase_OSCP/dsu.
[Graphical view]
PANTHERiPTHR11910. PTHR11910. 1 hit.
PfamiPF00213. OSCP. 1 hit.
[Graphical view]
PRINTSiPR00125. ATPASEDELTA.
SUPFAMiSSF47928. SSF47928. 1 hit.
TIGRFAMsiTIGR01145. ATP_synt_delta. 1 hit.
PROSITEiPS00389. ATPASE_DELTA. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P27180-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKGSLYSSKI AEPYAQALIG LAQQQNLTEV FGDNLRSLLT LLQDSPDLSA
60 70 80 90 100
VLSSPVVKDE DKKSVLRSVL GDGGNGYLLN FLMLLVDKRR IVFLEAICEQ
110 120 130 140 150
YLALLRQFTN TVLAEVTSAL KLTDAQKDQV KERVKQLTGA QAVELETKVD
160 170 180
GDILGGIVIK VGSQVFDSSL RGQLRRVGLS LGTAL
Length:185
Mass (Da):20,093
Last modified:August 1, 1992 - v1
Checksum:iF77D9DB601A17F12
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X58128 Genomic DNA. Translation: CAA41134.1.
BA000022 Genomic DNA. Translation: BAA16736.1.
PIRiS17750. PWYBD.
RefSeqiYP_005650113.1. NC_017277.1.
YP_007449939.1. NC_020286.1.

Genome annotation databases

EnsemblBacteriaiBAA16736; BAA16736; BAA16736.
KEGGisyn:sll1325.
PATRICi23837192. VBISynSp132158_0171.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X58128 Genomic DNA. Translation: CAA41134.1.
BA000022 Genomic DNA. Translation: BAA16736.1.
PIRiS17750. PWYBD.
RefSeqiYP_005650113.1. NC_017277.1.
YP_007449939.1. NC_020286.1.

3D structure databases

ProteinModelPortaliP27180.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiP27180. 1 interaction.
STRINGi1148.sll1325.

Proteomic databases

PaxDbiP27180.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA16736; BAA16736; BAA16736.
KEGGisyn:sll1325.
PATRICi23837192. VBISynSp132158_0171.

Phylogenomic databases

eggNOGiCOG0712.
HOGENOMiHOG000075825.
InParanoidiP27180.
KOiK02113.
OMAiVTTPYAE.
OrthoDBiEOG6DNTDK.
PhylomeDBiP27180.

Family and domain databases

Gene3Di1.10.520.20. 1 hit.
HAMAPiMF_01416. ATP_synth_delta_bact.
InterProiIPR020781. ATPase_OSCP/d_CS.
IPR026015. ATPase_OSCP/delta_N.
IPR000711. ATPase_OSCP/dsu.
[Graphical view]
PANTHERiPTHR11910. PTHR11910. 1 hit.
PfamiPF00213. OSCP. 1 hit.
[Graphical view]
PRINTSiPR00125. ATPASEDELTA.
SUPFAMiSSF47928. SSF47928. 1 hit.
TIGRFAMsiTIGR01145. ATP_synt_delta. 1 hit.
PROSITEiPS00389. ATPASE_DELTA. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The atp1 and atp2 operons of the cyanobacterium Synechocystis sp. PCC 6803."
    Lill H., Nelson N.
    Plant Mol. Biol. 17:641-652(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
    Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
    , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PCC 6803 / Kazusa.

Entry informationi

Entry nameiATPD_SYNY3
AccessioniPrimary (citable) accession number: P27180
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 1, 1992
Last sequence update: August 1, 1992
Last modified: May 27, 2015
This is version 102 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Synechocystis PCC 6803
    Synechocystis (strain PCC 6803): entries and gene names

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.