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P27180 (ATPD_SYNY3) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 95. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
ATP synthase subunit delta
Alternative name(s):
ATP synthase F(1) sector subunit delta
F-type ATPase subunit delta
Short name=F-ATPase subunit delta
Gene names
Name:atpH
Synonyms:atpD
Ordered Locus Names:sll1325
OrganismSynechocystis sp. (strain PCC 6803 / Kazusa) [Reference proteome] [HAMAP]
Taxonomic identifier1111708 [NCBI]
Taxonomic lineageBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis

Protein attributes

Sequence length185 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

F1F0 ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F1 containing the extramembraneous catalytic core and F0 containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F1 is coupled via a rotary mechanism of the central stalk subunits to proton translocation By similarity. HAMAP-Rule MF_01416

This protein is part of the stalk that links CF0 to CF1. It either transmits conformational changes from CF0 to CF1 or is implicated in proton conduction By similarity. HAMAP-Rule MF_01416

Subunit structure

F-type ATPases have 2 components, F1 - the catalytic core - and F0 - the membrane proton channel. F1 has five subunits: alpha3, beta3, gamma1, delta1, epsilon1. CF0 has four main subunits: a1, b1, b'1 and c(10-14). The alpha and beta chains form an alternating ring which encloses part of the gamma chain. F1 is attached to F0 by a central stalk formed by the gamma and epsilon chains, while a peripheral stalk is formed by the delta, b and b' chains By similarity.

Subcellular location

Cellular thylakoid membrane; Peripheral membrane protein By similarity HAMAP-Rule MF_01416.

Sequence similarities

Belongs to the ATPase delta chain family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 185185ATP synthase subunit delta HAMAP-Rule MF_01416
PRO_0000193495

Sequences

Sequence LengthMass (Da)Tools
P27180 [UniParc].

Last modified August 1, 1992. Version 1.
Checksum: F77D9DB601A17F12

FASTA18520,093
        10         20         30         40         50         60 
MKGSLYSSKI AEPYAQALIG LAQQQNLTEV FGDNLRSLLT LLQDSPDLSA VLSSPVVKDE 

        70         80         90        100        110        120 
DKKSVLRSVL GDGGNGYLLN FLMLLVDKRR IVFLEAICEQ YLALLRQFTN TVLAEVTSAL 

       130        140        150        160        170        180 
KLTDAQKDQV KERVKQLTGA QAVELETKVD GDILGGIVIK VGSQVFDSSL RGQLRRVGLS 


LGTAL 

« Hide

References

« Hide 'large scale' references
[1]"The atp1 and atp2 operons of the cyanobacterium Synechocystis sp. PCC 6803."
Lill H., Nelson N.
Plant Mol. Biol. 17:641-652(1991) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]"Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S. expand/collapse author list , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: PCC 6803 / Kazusa.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
X58128 Genomic DNA. Translation: CAA41134.1.
BA000022 Genomic DNA. Translation: BAA16736.1.
PIRPWYBD. S17750.
RefSeqNP_440056.1. NC_000911.1.
YP_005650113.1. NC_017277.1.
YP_007449939.1. NC_020286.1.

3D structure databases

ProteinModelPortalP27180.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

IntActP27180. 1 interaction.
STRING1148.sll1325.

Proteomic databases

PaxDbP27180.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAA16736; BAA16736; BAA16736.
GeneID953355.
KEGGsyn:sll1325.
syy:SYNGTS_0160.
syz:MYO_11590.
PATRIC23837192. VBISynSp132158_0171.

Phylogenomic databases

eggNOGCOG0712.
HOGENOMHOG000075825.
KOK02113.
OMAQVFAKKA.
OrthoDBEOG6DNTDK.
PhylomeDBP27180.

Family and domain databases

Gene3D1.10.520.20. 1 hit.
HAMAPMF_01416. ATP_synth_delta_bact.
InterProIPR000711. ATPase_F1-cplx_OSCP/dsu.
IPR020781. ATPase_F1-cplx_OSCP/dsu_CS.
IPR026015. ATPase_OSCP/delta_N.
[Graphical view]
PANTHERPTHR11910. PTHR11910. 1 hit.
PfamPF00213. OSCP. 1 hit.
[Graphical view]
PRINTSPR00125. ATPASEDELTA.
SUPFAMSSF47928. SSF47928. 1 hit.
TIGRFAMsTIGR01145. ATP_synt_delta. 1 hit.
PROSITEPS00389. ATPASE_DELTA. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameATPD_SYNY3
AccessionPrimary (citable) accession number: P27180
Entry history
Integrated into UniProtKB/Swiss-Prot: August 1, 1992
Last sequence update: August 1, 1992
Last modified: July 9, 2014
This is version 95 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Synechocystis PCC 6803

Synechocystis (strain PCC 6803): entries and gene names

SIMILARITY comments

Index of protein domains and families