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P27180

- ATPD_SYNY3

UniProt

P27180 - ATPD_SYNY3

Protein

ATP synthase subunit delta

Gene

atpH

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 97 (01 Oct 2014)
      Sequence version 1 (01 Aug 1992)
      Previous versions | rss
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    Functioni

    F1F0 ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F1 containing the extramembraneous catalytic core and F0 containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F1 is coupled via a rotary mechanism of the central stalk subunits to proton translocation.UniRule annotation
    This protein is part of the stalk that links CF0 to CF1. It either transmits conformational changes from CF0 to CF1 or is implicated in proton conduction.UniRule annotation

    GO - Molecular functioni

    1. proton-transporting ATP synthase activity, rotational mechanism Source: UniProtKB-HAMAP

    GO - Biological processi

    1. ATP synthesis coupled proton transport Source: InterPro

    Keywords - Biological processi

    ATP synthesis, Hydrogen ion transport, Ion transport, Transport

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    ATP synthase subunit deltaUniRule annotation
    Alternative name(s):
    ATP synthase F(1) sector subunit deltaUniRule annotation
    F-type ATPase subunit deltaUniRule annotation
    Short name:
    F-ATPase subunit deltaUniRule annotation
    Gene namesi
    Name:atpHUniRule annotation
    Synonyms:atpDUniRule annotation
    Ordered Locus Names:sll1325
    OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)
    Taxonomic identifieri1111708 [NCBI]
    Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
    ProteomesiUP000001425: Chromosome

    Subcellular locationi

    Cellular thylakoid membrane UniRule annotation; Peripheral membrane protein UniRule annotation

    GO - Cellular componenti

    1. plasma membrane proton-transporting ATP synthase complex Source: UniProtKB
    2. proton-transporting ATP synthase complex, catalytic core F(1) Source: UniProtKB-KW
    3. thylakoid membrane Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    CF(1), Membrane, Thylakoid

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 185185ATP synthase subunit deltaPRO_0000193495Add
    BLAST

    Proteomic databases

    PaxDbiP27180.

    Interactioni

    Subunit structurei

    F-type ATPases have 2 components, F1 - the catalytic core - and F0 - the membrane proton channel. F1 has five subunits: alpha3, beta3, gamma1, delta1, epsilon1. CF0 has four main subunits: a1, b1, b'1 and c(10-14). The alpha and beta chains form an alternating ring which encloses part of the gamma chain. F1 is attached to F0 by a central stalk formed by the gamma and epsilon chains, while a peripheral stalk is formed by the delta, b and b' chains.UniRule annotation

    Protein-protein interaction databases

    IntActiP27180. 1 interaction.
    STRINGi1148.sll1325.

    Structurei

    3D structure databases

    ProteinModelPortaliP27180.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ATPase delta chain family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0712.
    HOGENOMiHOG000075825.
    KOiK02113.
    OMAiQVFAKKA.
    OrthoDBiEOG6DNTDK.
    PhylomeDBiP27180.

    Family and domain databases

    Gene3Di1.10.520.20. 1 hit.
    HAMAPiMF_01416. ATP_synth_delta_bact.
    InterProiIPR020781. ATPase_OSCP/d_CS.
    IPR026015. ATPase_OSCP/delta_N.
    IPR000711. ATPase_OSCP/dsu.
    [Graphical view]
    PANTHERiPTHR11910. PTHR11910. 1 hit.
    PfamiPF00213. OSCP. 1 hit.
    [Graphical view]
    PRINTSiPR00125. ATPASEDELTA.
    SUPFAMiSSF47928. SSF47928. 1 hit.
    TIGRFAMsiTIGR01145. ATP_synt_delta. 1 hit.
    PROSITEiPS00389. ATPASE_DELTA. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P27180-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKGSLYSSKI AEPYAQALIG LAQQQNLTEV FGDNLRSLLT LLQDSPDLSA    50
    VLSSPVVKDE DKKSVLRSVL GDGGNGYLLN FLMLLVDKRR IVFLEAICEQ 100
    YLALLRQFTN TVLAEVTSAL KLTDAQKDQV KERVKQLTGA QAVELETKVD 150
    GDILGGIVIK VGSQVFDSSL RGQLRRVGLS LGTAL 185
    Length:185
    Mass (Da):20,093
    Last modified:August 1, 1992 - v1
    Checksum:iF77D9DB601A17F12
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X58128 Genomic DNA. Translation: CAA41134.1.
    BA000022 Genomic DNA. Translation: BAA16736.1.
    PIRiS17750. PWYBD.
    RefSeqiNP_440056.1. NC_000911.1.
    YP_005650113.1. NC_017277.1.
    YP_007449939.1. NC_020286.1.

    Genome annotation databases

    EnsemblBacteriaiBAA16736; BAA16736; BAA16736.
    GeneIDi953355.
    KEGGisyn:sll1325.
    syy:SYNGTS_0160.
    syz:MYO_11590.
    PATRICi23837192. VBISynSp132158_0171.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X58128 Genomic DNA. Translation: CAA41134.1 .
    BA000022 Genomic DNA. Translation: BAA16736.1 .
    PIRi S17750. PWYBD.
    RefSeqi NP_440056.1. NC_000911.1.
    YP_005650113.1. NC_017277.1.
    YP_007449939.1. NC_020286.1.

    3D structure databases

    ProteinModelPortali P27180.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    IntActi P27180. 1 interaction.
    STRINGi 1148.sll1325.

    Proteomic databases

    PaxDbi P27180.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAA16736 ; BAA16736 ; BAA16736 .
    GeneIDi 953355.
    KEGGi syn:sll1325.
    syy:SYNGTS_0160.
    syz:MYO_11590.
    PATRICi 23837192. VBISynSp132158_0171.

    Phylogenomic databases

    eggNOGi COG0712.
    HOGENOMi HOG000075825.
    KOi K02113.
    OMAi QVFAKKA.
    OrthoDBi EOG6DNTDK.
    PhylomeDBi P27180.

    Family and domain databases

    Gene3Di 1.10.520.20. 1 hit.
    HAMAPi MF_01416. ATP_synth_delta_bact.
    InterProi IPR020781. ATPase_OSCP/d_CS.
    IPR026015. ATPase_OSCP/delta_N.
    IPR000711. ATPase_OSCP/dsu.
    [Graphical view ]
    PANTHERi PTHR11910. PTHR11910. 1 hit.
    Pfami PF00213. OSCP. 1 hit.
    [Graphical view ]
    PRINTSi PR00125. ATPASEDELTA.
    SUPFAMi SSF47928. SSF47928. 1 hit.
    TIGRFAMsi TIGR01145. ATP_synt_delta. 1 hit.
    PROSITEi PS00389. ATPASE_DELTA. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The atp1 and atp2 operons of the cyanobacterium Synechocystis sp. PCC 6803."
      Lill H., Nelson N.
      Plant Mol. Biol. 17:641-652(1991) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    2. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
      Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
      , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
      DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: PCC 6803 / Kazusa.

    Entry informationi

    Entry nameiATPD_SYNY3
    AccessioniPrimary (citable) accession number: P27180
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: August 1, 1992
    Last sequence update: August 1, 1992
    Last modified: October 1, 2014
    This is version 97 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families
    2. Synechocystis PCC 6803
      Synechocystis (strain PCC 6803): entries and gene names

    External Data

    Dasty 3