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P27180

- ATPD_SYNY3

UniProt

P27180 - ATPD_SYNY3

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Protein

ATP synthase subunit delta

Gene
atpH, atpD, sll1325
Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Reviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

F1F0 ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F1 containing the extramembraneous catalytic core and F0 containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F1 is coupled via a rotary mechanism of the central stalk subunits to proton translocation By similarity.UniRule annotation
This protein is part of the stalk that links CF0 to CF1. It either transmits conformational changes from CF0 to CF1 or is implicated in proton conduction By similarity.UniRule annotation

GO - Molecular functioni

  1. proton-transporting ATP synthase activity, rotational mechanism Source: UniProtKB-HAMAP

GO - Biological processi

  1. ATP synthesis coupled proton transport Source: InterPro
Complete GO annotation...

Keywords - Biological processi

ATP synthesis, Hydrogen ion transport, Ion transport, Transport

Names & Taxonomyi

Protein namesi
Recommended name:
ATP synthase subunit delta
Alternative name(s):
ATP synthase F(1) sector subunit delta
F-type ATPase subunit delta
Short name:
F-ATPase subunit delta
Gene namesi
Name:atpH
Synonyms:atpD
Ordered Locus Names:sll1325
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
ProteomesiUP000001425: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. plasma membrane proton-transporting ATP synthase complex Source: UniProtKB
  2. proton-transporting ATP synthase complex, catalytic core F(1) Source: UniProtKB-KW
  3. thylakoid membrane Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

CF(1), Membrane, Thylakoid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 185185ATP synthase subunit deltaUniRule annotationPRO_0000193495Add
BLAST

Proteomic databases

PaxDbiP27180.

Interactioni

Subunit structurei

F-type ATPases have 2 components, F1 - the catalytic core - and F0 - the membrane proton channel. F1 has five subunits: alpha3, beta3, gamma1, delta1, epsilon1. CF0 has four main subunits: a1, b1, b'1 and c(10-14). The alpha and beta chains form an alternating ring which encloses part of the gamma chain. F1 is attached to F0 by a central stalk formed by the gamma and epsilon chains, while a peripheral stalk is formed by the delta, b and b' chains By similarity.

Protein-protein interaction databases

IntActiP27180. 1 interaction.
STRINGi1148.sll1325.

Structurei

3D structure databases

ProteinModelPortaliP27180.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0712.
HOGENOMiHOG000075825.
KOiK02113.
OMAiQVFAKKA.
OrthoDBiEOG6DNTDK.
PhylomeDBiP27180.

Family and domain databases

Gene3Di1.10.520.20. 1 hit.
HAMAPiMF_01416. ATP_synth_delta_bact.
InterProiIPR020781. ATPase_OSCP/d_CS.
IPR026015. ATPase_OSCP/delta_N.
IPR000711. ATPase_OSCP/dsu.
[Graphical view]
PANTHERiPTHR11910. PTHR11910. 1 hit.
PfamiPF00213. OSCP. 1 hit.
[Graphical view]
PRINTSiPR00125. ATPASEDELTA.
SUPFAMiSSF47928. SSF47928. 1 hit.
TIGRFAMsiTIGR01145. ATP_synt_delta. 1 hit.
PROSITEiPS00389. ATPASE_DELTA. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P27180-1 [UniParc]FASTAAdd to Basket

« Hide

MKGSLYSSKI AEPYAQALIG LAQQQNLTEV FGDNLRSLLT LLQDSPDLSA    50
VLSSPVVKDE DKKSVLRSVL GDGGNGYLLN FLMLLVDKRR IVFLEAICEQ 100
YLALLRQFTN TVLAEVTSAL KLTDAQKDQV KERVKQLTGA QAVELETKVD 150
GDILGGIVIK VGSQVFDSSL RGQLRRVGLS LGTAL 185
Length:185
Mass (Da):20,093
Last modified:August 1, 1992 - v1
Checksum:iF77D9DB601A17F12
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X58128 Genomic DNA. Translation: CAA41134.1.
BA000022 Genomic DNA. Translation: BAA16736.1.
PIRiS17750. PWYBD.
RefSeqiNP_440056.1. NC_000911.1.
YP_005650113.1. NC_017277.1.
YP_007449939.1. NC_020286.1.

Genome annotation databases

EnsemblBacteriaiBAA16736; BAA16736; BAA16736.
GeneIDi953355.
KEGGisyn:sll1325.
syy:SYNGTS_0160.
syz:MYO_11590.
PATRICi23837192. VBISynSp132158_0171.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X58128 Genomic DNA. Translation: CAA41134.1 .
BA000022 Genomic DNA. Translation: BAA16736.1 .
PIRi S17750. PWYBD.
RefSeqi NP_440056.1. NC_000911.1.
YP_005650113.1. NC_017277.1.
YP_007449939.1. NC_020286.1.

3D structure databases

ProteinModelPortali P27180.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

IntActi P27180. 1 interaction.
STRINGi 1148.sll1325.

Proteomic databases

PaxDbi P27180.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAA16736 ; BAA16736 ; BAA16736 .
GeneIDi 953355.
KEGGi syn:sll1325.
syy:SYNGTS_0160.
syz:MYO_11590.
PATRICi 23837192. VBISynSp132158_0171.

Phylogenomic databases

eggNOGi COG0712.
HOGENOMi HOG000075825.
KOi K02113.
OMAi QVFAKKA.
OrthoDBi EOG6DNTDK.
PhylomeDBi P27180.

Family and domain databases

Gene3Di 1.10.520.20. 1 hit.
HAMAPi MF_01416. ATP_synth_delta_bact.
InterProi IPR020781. ATPase_OSCP/d_CS.
IPR026015. ATPase_OSCP/delta_N.
IPR000711. ATPase_OSCP/dsu.
[Graphical view ]
PANTHERi PTHR11910. PTHR11910. 1 hit.
Pfami PF00213. OSCP. 1 hit.
[Graphical view ]
PRINTSi PR00125. ATPASEDELTA.
SUPFAMi SSF47928. SSF47928. 1 hit.
TIGRFAMsi TIGR01145. ATP_synt_delta. 1 hit.
PROSITEi PS00389. ATPASE_DELTA. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The atp1 and atp2 operons of the cyanobacterium Synechocystis sp. PCC 6803."
    Lill H., Nelson N.
    Plant Mol. Biol. 17:641-652(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
    Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
    , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PCC 6803 / Kazusa.

Entry informationi

Entry nameiATPD_SYNY3
AccessioniPrimary (citable) accession number: P27180
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 1, 1992
Last sequence update: August 1, 1992
Last modified: September 3, 2014
This is version 96 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Synechocystis PCC 6803
    Synechocystis (strain PCC 6803): entries and gene names

External Data

Dasty 3

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