P27180 (ATPD_SYNY3) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
ATP synthase subunit delta

Alternative name(s):
ATP synthase F(1) sector subunit delta
F-type ATPase subunit delta
Short name=F-ATPase subunit delta

Gene names

Name:	atpH
Synonyms:	atpD
Ordered Locus Names:	sll1325

Organism

Synechocystis sp. (strain PCC 6803 / Kazusa) [Reference proteome] [HAMAP]

Taxonomic identifier

1111708 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Cyanobacteria › Oscillatoriophycideae › Chroococcales › Synechocystis › Synechocystis sp. PCC 6803

Protein attributes

Sequence length	185 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	F1F0 ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F1 containing the extramembraneous catalytic core and F0 containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F1 is coupled via a rotary mechanism of the central stalk subunits to proton translocation By similarity. HAMAP-Rule MF_01416 This protein is part of the stalk that links CF0 to CF1. It either transmits conformational changes from CF0 to CF1 or is implicated in proton conduction By similarity. HAMAP-Rule MF_01416
Subunit structure	F-type ATPases have 2 components, F1 - the catalytic core - and F0 - the membrane proton channel. F1 has five subunits: alpha3, beta3, gamma1, delta1, epsilon1. CF0 has four main subunits: a1, b1, b'1 and c(10-14). The alpha and beta chains form an alternating ring which encloses part of the gamma chain. F1 is attached to F0 by a central stalk formed by the gamma and epsilon chains, while a peripheral stalk is formed by the delta, b and b' chains By similarity.
Subcellular location	Cellular thylakoid membrane; Peripheral membrane protein By similarity HAMAP-Rule MF_01416.
Sequence similarities	Belongs to the ATPase delta chain family.

Ontologies

Keywords
Biological process	ATP synthesis Hydrogen ion transport Ion transport Transport
Cellular component	CF(1) Membrane Thylakoid
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	ATP synthesis coupled proton transport Inferred from electronic annotation. Source: InterPro
Cellular_component	plasma membrane proton-transporting ATP synthase complex Inferred from direct assay PubMed 14730074. Source: UniProtKB proton-transporting ATP synthase complex, catalytic core F(1) Inferred from electronic annotation. Source: UniProtKB-KW thylakoid membrane Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	proton-transporting ATP synthase activity, rotational mechanism Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 185	185	ATP synthase subunit delta HAMAP-Rule MF_01416		PRO_0000193495

Sequences

	Sequence		Length	Mass (Da)
	P27180 [UniParc]. Last modified August 1, 1992. Version 1. Checksum: F77D9DB601A17F12	FASTA	185	20,093
	10 20 30 40 50 60 MKGSLYSSKI AEPYAQALIG LAQQQNLTEV FGDNLRSLLT LLQDSPDLSA VLSSPVVKDE 70 80 90 100 110 120 DKKSVLRSVL GDGGNGYLLN FLMLLVDKRR IVFLEAICEQ YLALLRQFTN TVLAEVTSAL 130 140 150 160 170 180 KLTDAQKDQV KERVKQLTGA QAVELETKVD GDILGGIVIK VGSQVFDSSL RGQLRRVGLS LGTAL

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The atp1 and atp2 operons of the cyanobacterium Synechocystis sp. PCC 6803." Lill H., Nelson N. Plant Mol. Biol. 17:641-652(1991) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]	"Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions." Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S. , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S. DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: PCC 6803 / Kazusa.

Cross-references

Sequence databases
EMBL GenBank DDBJ	X58128 Genomic DNA. Translation: CAA41134.1. BA000022 Genomic DNA. Translation: BAA16736.1.
PIR	PWYBD. S17750.
RefSeq	NP_440056.1. NC_000911.1. YP_005650113.1. NC_017277.1. YP_007449939.1. NC_020286.1.
3D structure databases
ProteinModelPortal	P27180.
ModBase	Search...
Protein-protein interaction databases
IntAct	P27180. 1 interaction.
STRING	1148.sll1325.
Proteomic databases
PaxDb	P27180.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	BAA16736; BAA16736; BAA16736.
GeneID	12253947. 14615581. 953355.
KEGG	syn:sll1325. syy:SYNGTS_0160.
PATRIC	23837192. VBISynSp132158_0171.
Phylogenomic databases
eggNOG	COG0712.
HOGENOM	HOG000075825.
KO	K02113.
OMA	MPLLNSV.
ProtClustDB	PRK05758.
Family and domain databases
Gene3D	1.10.520.20. 1 hit.
HAMAP	MF_01416. ATP_synth_delta_bact.
InterPro	IPR000711. ATPase_F1-cplx_OSCP/dsu. IPR020781. ATPase_F1-cplx_OSCP/dsu_CS. IPR026015. ATPase_OSCP/delta_N. [Graphical view]
PANTHER	PTHR11910. PTHR11910. 1 hit.
Pfam	PF00213. OSCP. 1 hit. [Graphical view]
PRINTS	PR00125. ATPASEDELTA.
SUPFAM	SSF47928. ATPsynt_OSCP. 1 hit.
TIGRFAMs	TIGR01145. ATP_synt_delta. 1 hit.
PROSITE	PS00389. ATPASE_DELTA. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

ATPD_SYNY3

Accession

Primary (citable) accession number: P27180

Entry history

Integrated into UniProtKB/Swiss-Prot:	August 1, 1992
Last sequence update:	August 1, 1992
Last modified:	May 1, 2013
This is version 88 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program