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Protein

Lipopolysaccharide core biosynthesis protein RfaS

Gene

rfaS

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Pathwayi: LPS core biosynthesis

This protein is involved in the pathway LPS core biosynthesis, which is part of Bacterial outer membrane biogenesis.
View all proteins of this organism that are known to be involved in the pathway LPS core biosynthesis and in Bacterial outer membrane biogenesis.

GO - Biological processi

  • lipopolysaccharide core region biosynthetic process Source: EcoCyc
Complete GO annotation...

Keywords - Biological processi

Lipopolysaccharide biosynthesis

Enzyme and pathway databases

BioCyciEcoCyc:EG11350-MONOMER.
ECOL316407:JW3604-MONOMER.
UniPathwayiUPA00958.

Names & Taxonomyi

Protein namesi
Recommended name:
Lipopolysaccharide core biosynthesis protein RfaS
Gene namesi
Name:rfaS
Ordered Locus Names:b3629, JW3604
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11350. rfaS.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000972871 – 311Lipopolysaccharide core biosynthesis protein RfaSAdd BLAST311

Proteomic databases

PaxDbiP27126.
PRIDEiP27126.

Interactioni

Protein-protein interaction databases

BioGridi4262573. 204 interactors.
IntActiP27126. 3 interactors.
STRINGi511145.b3629.

Structurei

3D structure databases

ProteinModelPortaliP27126.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG410650X. Bacteria.
ENOG4112C48. LUCA.
HOGENOMiHOG000054847.
KOiK12986.
OMAiWNSEYER.

Sequencei

Sequence statusi: Complete.

P27126-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTIYFINWVA DYELKMIQYL KKKYKIKNIT TPKKYNWINK KISKIGMDNA
60 70 80 90 100
WLGRLFIKHY LNDIKKDDII IINDSVVNKG INKQILKNIN CHKVLLLRNT
110 120 130 140 150
VGEDFILDNA NYFDIIYDFE HRFIGNEKIK AIEQFFPIGM DEIRNYSLSD
160 170 180 190 200
KNNSQPICFF LGRDKGRLQI INELAERLTT LGCKLDFNVV KDKTSSTTSK
210 220 230 240 250
YLIEKQISYE ENIRRTLNAN IIVDITKENQ SGWTLRILEA LFFNKKLITN
260 270 280 290 300
NINVFGSEIY SESRFFIIGH DDWDKLEYFI NSSVKPMDYD SLYKFSPDKM
310
MSTIVSDFID K
Length:311
Mass (Da):36,730
Last modified:August 1, 1992 - v1
Checksum:iC03F1EBEEA6D5C26
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M80599 Genomic DNA. Translation: AAA24084.1.
U00039 Genomic DNA. Translation: AAB18606.1.
U00096 Genomic DNA. Translation: AAC76653.1.
AP009048 Genomic DNA. Translation: BAE77663.1.
PIRiA42982.
RefSeqiNP_418086.1. NC_000913.3.
WP_000158225.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76653; AAC76653; b3629.
BAE77663; BAE77663; BAE77663.
GeneIDi948151.
KEGGiecj:JW3604.
eco:b3629.
PATRICi32122745. VBIEscCol129921_3749.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M80599 Genomic DNA. Translation: AAA24084.1.
U00039 Genomic DNA. Translation: AAB18606.1.
U00096 Genomic DNA. Translation: AAC76653.1.
AP009048 Genomic DNA. Translation: BAE77663.1.
PIRiA42982.
RefSeqiNP_418086.1. NC_000913.3.
WP_000158225.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP27126.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262573. 204 interactors.
IntActiP27126. 3 interactors.
STRINGi511145.b3629.

Proteomic databases

PaxDbiP27126.
PRIDEiP27126.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76653; AAC76653; b3629.
BAE77663; BAE77663; BAE77663.
GeneIDi948151.
KEGGiecj:JW3604.
eco:b3629.
PATRICi32122745. VBIEscCol129921_3749.

Organism-specific databases

EchoBASEiEB1325.
EcoGeneiEG11350. rfaS.

Phylogenomic databases

eggNOGiENOG410650X. Bacteria.
ENOG4112C48. LUCA.
HOGENOMiHOG000054847.
KOiK12986.
OMAiWNSEYER.

Enzyme and pathway databases

UniPathwayiUPA00958.
BioCyciEcoCyc:EG11350-MONOMER.
ECOL316407:JW3604-MONOMER.

Miscellaneous databases

PROiP27126.

Family and domain databases

ProtoNetiSearch...

Entry informationi

Entry nameiRFAS_ECOLI
AccessioniPrimary (citable) accession number: P27126
Secondary accession number(s): Q2M7U3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 1, 1992
Last sequence update: August 1, 1992
Last modified: November 2, 2016
This is version 94 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.