Skip Header

Contribute Send feedback
Read comments (?) or add your own

P26599 (PTBP1_HUMAN) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 142. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (4) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Polypyrimidine tract-binding protein 1

Short name=PTB
Alternative name(s):
57 kDa RNA-binding protein PPTB-1
Heterogeneous nuclear ribonucleoprotein I
Short name=hnRNP I
Gene names
Name:PTBP1
Synonyms:PTB
OrganismHomo sapiens (Human)
Taxonomic identifier9606 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Protein attributes

Sequence length531 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Plays a role in pre-mRNA splicing and in the regulation of alternative splicing events. Activates exon skipping of its own pre-mRNA during muscle cell differentiation. Binds to the polypyrimidine tract of introns. May promote RNA looping when bound to two separate polypyrimidine tracts in the same pre-mRNA. May promote the binding of U2 snRNP to pre-mRNA. Cooperates with RAVER1 to modulate switching between mutually exclusive exons during maturation of the TPM1 pre-mRNA. Represses the splicing of MAPT/Tau exon 10. Ref.9 Ref.10 Ref.11 Ref.19 Ref.22

Subunit structure

Monomer. Part of a ternary complex containing KHSRP, PTBP1, PTBP2 and HNRPH1. Interacts with RAVER1 and SFPQ. Ref.8 Ref.9 Ref.21

Subcellular location

Nucleus.

Sequence similarities

Contains 4 RRM (RNA recognition motif) domains.

Binary interactions

With

Entry

#Exp.

IntAct

Notes

hnrnpabQ7ZYE94EBI-350540,EBI-1086317From a different organism.
PCBP1Q153652EBI-350540,EBI-946095
QKIQ96PU82EBI-350540,EBI-945792
SFPQP232462EBI-350540,EBI-355453

Alternative products

This entry describes 2 isoforms produced by alternative splicing. [Align] [Select]

Note: Additional isoforms seem to exist.
Isoform 1 (identifier: P26599-1)

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
Isoform 2 (identifier: P26599-2)

Also known as: PTB2;

The sequence of this isoform differs from the canonical sequence as follows:
     297-297: F → FASPYAGAGFPPTFAIPQAA

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 531531Polypyrimidine tract-binding protein 1
PRO_0000081737

Regions

Domain59 – 14385RRM 1
Domain184 – 26077RRM 2
Domain337 – 41175RRM 3
Domain454 – 52976RRM 4
Compositional bias316 – 3238Poly-Ala

Amino acid modifications

Modified residue11N-acetylmethionine Ref.6 Ref.16
Modified residue161Phosphoserine Ref.15
Modified residue1271Phosphotyrosine Ref.12
Modified residue1411Phosphoserine Ref.13 Ref.15 Ref.17
Modified residue4331Phosphoserine Ref.13 Ref.14

Natural variations

Alternative sequence2971F → FASPYAGAGFPPTFAIPQAA in isoform 2.
VSP_005802

Secondary structure

................................................................... 531
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
Isoform 1 [UniParc].

Last modified August 1, 1992. Version 1.
Checksum: BE12D5EA21537BED

FASTA53157,221
        10         20         30         40         50         60 
MDGIVPDIAV GTKRGSDELF STCVTNGPFI MSSNSASAAN GNDSKKFKGD SRSAGVPSRV 

        70         80         90        100        110        120 
IHIRKLPIDV TEGEVISLGL PFGKVTNLLM LKGKNQAFIE MNTEEAANTM VNYYTSVTPV 

       130        140        150        160        170        180 
LRGQPIYIQF SNHKELKTDS SPNQARAQAA LQAVNSVQSG NLALAASAAA VDAGMAMAGQ 

       190        200        210        220        230        240 
SPVLRIIVEN LFYPVTLDVL HQIFSKFGTV LKIITFTKNN QFQALLQYAD PVSAQHAKLS 

       250        260        270        280        290        300 
LDGQNIYNAC CTLRIDFSKL TSLNVKYNND KSRDYTRPDL PSGDSQPSLD QTMAAAFGLS 

       310        320        330        340        350        360 
VPNVHGALAP LAIPSAAAAA AAAGRIAIPG LAGAGNSVLL VSNLNPERVT PQSLFILFGV 

       370        380        390        400        410        420 
YGDVQRVKIL FNKKENALVQ MADGNQAQLA MSHLNGHKLH GKPIRITLSK HQNVQLPREG 

       430        440        450        460        470        480 
QEDQGLTKDY GNSPLHRFKK PGSKNFQNIF PPSATLHLSN IPPSVSEEDL KVLFSSNGGV 

       490        500        510        520        530 
VKGFKFFQKD RKMALIQMGS VEEAVQALID LHNHDLGENH HLRVSFSKST I 

« Hide

Isoform 2 (PTB2) [UniParc].

Checksum: 70CB96D0530CA091
Show »

FASTA55059,037

References

« Hide 'large scale' references
[1]"Characterization of cDNAs encoding the polypyrimidine tract-binding protein."
Gil A., Sharp P.A., Jamison S.F., Garcia-Blanco M.A.
Genes Dev. 5:1224-1236(1991) [PubMed: 1906035] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA], PROTEIN SEQUENCE OF 123-130 AND 219-238.
Tissue: Placenta.
[2]"Characterization and molecular cloning of polypyrimidine tract-binding protein: a component of a complex necessary for pre-mRNA splicing."
Patton J.G., Mayer S.A., Tempst P., Nadal-Ginard B.
Genes Dev. 5:1237-1251(1991) [PubMed: 1906036] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA].
[3]"hnRNP I, the polypyrimidine tract-binding protein: distinct nuclear localization and association with hnRNAs."
Ghetti A., Pinol-Roma S., Michael W., Morandi C., Dreyfuss G.
Nucleic Acids Res. 20:3671-3678(1992) [PubMed: 1641332] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA].
Tissue: Liver.
[4]"The DNA sequence and biology of human chromosome 19."
Grimwood J., Gordon L.A., Olsen A.S., Terry A., Schmutz J., Lamerdin J.E., Hellsten U., Goodstein D., Couronne O., Tran-Gyamfi M., Aerts A., Altherr M., Ashworth L., Bajorek E., Black S., Branscomb E., Caenepeel S., Carrano A.V. expand/collapse author list , Caoile C., Chan Y.M., Christensen M., Cleland C.A., Copeland A., Dalin E., Dehal P., Denys M., Detter J.C., Escobar J., Flowers D., Fotopulos D., Garcia C., Georgescu A.M., Glavina T., Gomez M., Gonzales E., Groza M., Hammon N., Hawkins T., Haydu L., Ho I., Huang W., Israni S., Jett J., Kadner K., Kimball H., Kobayashi A., Larionov V., Leem S.-H., Lopez F., Lou Y., Lowry S., Malfatti S., Martinez D., McCready P.M., Medina C., Morgan J., Nelson K., Nolan M., Ovcharenko I., Pitluck S., Pollard M., Popkie A.P., Predki P., Quan G., Ramirez L., Rash S., Retterer J., Rodriguez A., Rogers S., Salamov A., Salazar A., She X., Smith D., Slezak T., Solovyev V., Thayer N., Tice H., Tsai M., Ustaszewska A., Vo N., Wagner M., Wheeler J., Wu K., Xie G., Yang J., Dubchak I., Furey T.S., DeJong P., Dickson M., Gordon D., Eichler E.E., Pennacchio L.A., Richardson P., Stubbs L., Rokhsar D.S., Myers R.M., Rubin E.M., Lucas S.M.
Nature 428:529-535(2004) [PubMed: 15057824] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[5]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
Tissue: Skin.
[6]Bienvenut W.V., Heiserich L., Boulahbel H., Gottlieb E., Matallanas D., Cooper W.N., Boldt K., von Kriegsheim A.F., Kolch W.
Submitted (JUL-2007) to UniProtKB
Cited for: PROTEIN SEQUENCE OF 1-13; 65-92; 123-134; 219-238; 326-348; 411-418; 429-437 AND 472-482, ACETYLATION AT MET-1, MASS SPECTROMETRY.
Tissue: Colon carcinoma, Hepatoma and Mammary carcinoma.
[7]"Microsequences of 145 proteins recorded in the two-dimensional gel protein database of normal human epidermal keratinocytes."
Rasmussen H.H., van Damme J., Puype M., Gesser B., Celis J.E., Vandekerckhove J.
Electrophoresis 13:960-969(1992) [PubMed: 1286667] [Abstract]
Cited for: PROTEIN SEQUENCE OF 123-129; 399-405; 411-426 AND 429-437.
Tissue: Keratinocyte.
[8]"Differential nuclear localization and nuclear matrix association of the splicing factors PSF and PTB."
Meissner M., Dechat T., Gerner C., Grimm R., Foisner R., Sauermann G.
J. Cell. Biochem. 76:559-566(2000) [PubMed: 10653975] [Abstract]
Cited for: INTERACTION WITH SFPQ.
[9]"Cooperative assembly of an hnRNP complex induced by a tissue-specific homolog of polypyrimidine tract binding protein."
Markovtsov V., Nikolic J.M., Goldman J.A., Turck C.W., Chou M.-Y., Black D.L.
Mol. Cell. Biol. 20:7463-7479(2000) [PubMed: 11003644] [Abstract]
Cited for: FUNCTION, INTERACTION WITH HNRPH1; PTBP2 AND KHSRP.
[10]"Tau exon 10, whose missplicing causes frontotemporal dementia, is regulated by an intricate interplay of cis elements and trans factors."
Wang J., Gao Q.S., Wang Y., Lafyatis R., Stamm S., Andreadis A.
J. Neurochem. 88:1078-1090(2004) [PubMed: 15009664] [Abstract]
Cited for: FUNCTION.
[11]"Exon selection in alpha-tropomyosin mRNA is regulated by the antagonistic action of RBM4 and PTB."
Lin J.C., Tarn W.Y.
Mol. Cell. Biol. 25:10111-10121(2005) [PubMed: 16260624] [Abstract]
Cited for: FUNCTION, RNA-BINDING.
[12]"Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer."
Rikova K., Guo A., Zeng Q., Possemato A., Yu J., Haack H., Nardone J., Lee K., Reeves C., Li Y., Hu Y., Tan Z., Stokes M., Sullivan L., Mitchell J., Wetzel R., Macneill J., Ren J.M. expand/collapse author list , Yuan J., Bakalarski C.E., Villen J., Kornhauser J.M., Smith B., Li D., Zhou X., Gygi S.P., Gu T.-L., Polakiewicz R.D., Rush J., Comb M.J.
Cell 131:1190-1203(2007) [PubMed: 18083107] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-127, MASS SPECTROMETRY.
Tissue: Lung carcinoma.
[13]"Improved titanium dioxide enrichment of phosphopeptides from HeLa cells and high confident phosphopeptide identification by cross-validation of MS/MS and MS/MS/MS spectra."
Yu L.-R., Zhu Z., Chan K.C., Issaq H.J., Dimitrov D.S., Veenstra T.D.
J. Proteome Res. 6:4150-4162(2007) [PubMed: 17924679] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-141 AND SER-433, MASS SPECTROMETRY.
Tissue: Cervix carcinoma.
[14]"Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle."
Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R., Greff Z., Keri G., Stemmann O., Mann M.
Mol. Cell 31:438-448(2008) [PubMed: 18691976] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-433, MASS SPECTROMETRY.
Tissue: Cervix carcinoma.
[15]"A quantitative atlas of mitotic phosphorylation."
Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P.
Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed: 18669648] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-16 AND SER-141, MASS SPECTROMETRY.
Tissue: Cervix carcinoma.
[16]"Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach."
Gauci S., Helbig A.O., Slijper M., Krijgsveld J., Heck A.J., Mohammed S.
Anal. Chem. 81:4493-4501(2009) [PubMed: 19413330] [Abstract]
Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT MET-1, MASS SPECTROMETRY.
Tissue: Embryonic kidney.
[17]"Large-scale proteomics analysis of the human kinome."
Oppermann F.S., Gnad F., Olsen J.V., Hornberger R., Greff Z., Keri G., Mann M., Daub H.
Mol. Cell. Proteomics 8:1751-1764(2009) [PubMed: 19369195] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-141, MASS SPECTROMETRY.
[18]"Initial characterization of the human central proteome."
Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J.
BMC Syst. Biol. 5:17-17(2011) [PubMed: 21269460] [Abstract]
Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
[19]"RBM4 down-regulates PTB and antagonizes its activity in muscle cell-specific alternative splicing."
Lin J.C., Tarn W.Y.
J. Cell Biol. 193:509-520(2011) [PubMed: 21518792] [Abstract]
Cited for: FUNCTION.
[20]"Structure of tandem RNA recognition motifs from polypyrimidine tract binding protein reveals novel features of the RRM fold."
Conte M.R., Gruene T., Ghuman J., Kelly G., Ladas A., Matthews S., Curry S.
EMBO J. 19:3132-3141(2000) [PubMed: 10856256] [Abstract]
Cited for: STRUCTURE BY NMR OF 335-531, RNA-BINDING.
[21]"Structure and RNA interactions of the N-terminal RRM domains of PTB."
Simpson P.J., Monie T.P., Szendroei A., Davydova N., Tyzack J.K., Conte M.R., Read C.M., Cary P.D., Svergun D.I., Konarev P.V., Curry S., Matthews S.
Structure 12:1631-1643(2004) [PubMed: 15341728] [Abstract]
Cited for: STRUCTURE BY NMR OF 55-301, SUBUNIT, RNA-BINDING.
[22]"Structure of PTB bound to RNA: specific binding and implications for splicing regulation."
Oberstrass F.C., Auweter S.D., Erat M., Hargous Y., Henning A., Wenter P., Reymond L., Amir-Ahmady B., Pitsch S., Black D.L., Allain F.H.
Science 309:2054-2057(2005) [PubMed: 16179478] [Abstract]
Cited for: STRUCTURE BY NMR OF 49-531 IN COMPLEXES WITH RNA, FUNCTION.
[23]"Structure of the two most C-terminal RNA recognition motifs of PTB using segmental isotope labeling."
Vitali F., Henning A., Oberstrass F.C., Hargous Y., Auweter S.D., Erat M., Allain F.H.
EMBO J. 25:150-162(2006) [PubMed: 16362043] [Abstract]
Cited for: STRUCTURE BY NMR OF 324-531.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
X62006 mRNA. Translation: CAA43973.1.
X65371 mRNA. Translation: CAA46443.1.
X65372 mRNA. Translation: CAA46444.1.
X60648 mRNA. Translation: CAA43056.1.
X66975 mRNA. Translation: CAA47386.1.
AC006273 Genomic DNA. Translation: AAC99798.1.
BC004383 mRNA. Translation: AAH04383.1.
IPIIPI00179964.
IPI00334175.
PIRS23016.
RefSeqNP_002810.1. NM_002819.4.
NP_114367.1. NM_031990.3.
NP_114368.1. NM_031991.3.
NP_787041.1. NM_175847.2.
UniGeneHs.172550.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1QM9NMR-A335-531[»]
1SJQNMR-A55-147[»]
1SJRNMR-A147-301[»]
2AD9NMR-A49-146[»]
2ADBNMR-A172-298[»]
2ADCNMR-A324-531[»]
2EVZNMR-A324-531[»]
ProteinModelPortalP26599.
SMRP26599. Positions 49-531.
ModBaseSearch...

Protein-protein interaction databases

IntActP26599. 20 interactions.
MINTMINT-1348690.
STRINGP26599.

PTM databases

PhosphoSiteP26599.

Polymorphism databases

DMDM131528.

2D gel databases

SWISS-2DPAGEP26599.
Aarhus/Ghent-2DPAGE1505. NEPHGE.

Proteomic databases

PRIDEP26599.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENST00000349038; ENSP00000014112; ENSG00000011304.
GeneID5725.
KEGGhsa:5725.
UCSCuc002lpq.1. human.
uc002lpr.1. human.

Organism-specific databases

CTD5725.
GeneCardsGC19P000797.
HGNCHGNC:9583. PTBP1.
HPACAB013507.
MIM600693. gene.
neXtProtNX_P26599.
GenAtlasSearch...

Phylogenomic databases

eggNOGprNOG10547.
HOVERGENHBG069548.
PhylomeDBP26599.

Enzyme and pathway databases

ReactomeREACT_1675. mRNA Processing.
REACT_71. Gene Expression.

Gene expression databases

ArrayExpressP26599.
BgeeP26599.
CleanExHS_PTBP1.
GenevestigatorP26599.
GermOnlineENSG00000011304. Homo sapiens.

Family and domain databases

InterProIPR006536. HnRNP-L_PTB.
IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
Gene3DG3DSA:3.30.70.330. a_b_plait_nuc_bd. 4 hits.
KOK13218.
PfamPF00076. RRM_1. 3 hits.
[Graphical view]
SMARTSM00360. RRM. 4 hits.
[Graphical view]
TIGRFAMsTIGR01649. HnRNP-L_PTB. 1 hit.
PROSITEPS50102. RRM. 4 hits.
[Graphical view]
ProtoNetSearch...

Other

NextBio22252.
PMAP-CutDBP26599.
SOURCESearch...

Entry information

Entry namePTBP1_HUMAN
AccessionPrimary (citable) accession number: P26599
Entry history
Integrated into UniProtKB/Swiss-Prot: August 1, 1992
Last sequence update: August 1, 1992
Last modified: January 25, 2012
This is version 142 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Relevant documents

Human chromosome 19

Human chromosome 19: entries, gene names and cross-references to MIM

MIM cross-references

Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families