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P26527

- ATPB_SYNY3

UniProt

P26527 - ATPB_SYNY3

Protein

ATP synthase subunit beta

Gene

atpD

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 120 (01 Oct 2014)
      Sequence version 1 (01 Aug 1992)
      Previous versions | rss
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    Functioni

    Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.UniRule annotation

    Catalytic activityi

    ATP + H2O + H+(In) = ADP + phosphate + H+(Out).UniRule annotation

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Nucleotide bindingi162 – 1698ATPUniRule annotation

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-HAMAP
    2. proton-transporting ATP synthase activity, rotational mechanism Source: UniProtKB-HAMAP

    GO - Biological processi

    1. ATP hydrolysis coupled proton transport Source: InterPro
    2. plasma membrane ATP synthesis coupled proton transport Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Hydrolase

    Keywords - Biological processi

    ATP synthesis, Hydrogen ion transport, Ion transport, Transport

    Keywords - Ligandi

    ATP-binding, Nucleotide-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    ATP synthase subunit betaUniRule annotation (EC:3.6.3.14UniRule annotation)
    Alternative name(s):
    ATP synthase F1 sector subunit betaUniRule annotation
    F-ATPase subunit betaUniRule annotation
    Gene namesi
    Name:atpDUniRule annotation
    Synonyms:atpBUniRule annotation
    Ordered Locus Names:slr1329
    OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)
    Taxonomic identifieri1111708 [NCBI]
    Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
    ProteomesiUP000001425: Chromosome

    Subcellular locationi

    Cellular thylakoid membrane UniRule annotation; Peripheral membrane protein UniRule annotation

    GO - Cellular componenti

    1. plasma membrane proton-transporting ATP synthase complex Source: UniProtKB
    2. proton-transporting ATP synthase complex, catalytic core F(1) Source: UniProtKB-KW
    3. thylakoid membrane Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    CF(1), Membrane, Thylakoid

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 483483ATP synthase subunit betaPRO_0000144483Add
    BLAST

    Proteomic databases

    PaxDbiP26527.
    PRIDEiP26527.

    Interactioni

    Subunit structurei

    F-type ATPases have 2 components, CF1 - the catalytic core - and CF0 - the membrane proton channel. CF1 has five subunits: alpha3, beta3, gamma1, delta1, epsilon1. CF0 has four main subunits: a1, b1, b'1 and c(9-12).UniRule annotation

    Protein-protein interaction databases

    IntActiP26527. 7 interactions.
    STRINGi1148.slr1329.

    Structurei

    3D structure databases

    ProteinModelPortaliP26527.
    SMRiP26527. Positions 9-475.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ATPase alpha/beta chains family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0055.
    HOGENOMiHOG000009605.
    KOiK02112.
    OMAiNPAGQDV.
    OrthoDBiEOG6HQSP3.
    PhylomeDBiP26527.

    Family and domain databases

    Gene3Di1.10.1140.10. 1 hit.
    3.40.50.300. 1 hit.
    HAMAPiMF_01347. ATP_synth_beta_bact.
    InterProiIPR003593. AAA+_ATPase.
    IPR020003. ATPase_a/bsu_AS.
    IPR005722. ATPase_F1-cplx_bsu.
    IPR000793. ATPase_F1/V1/A1-cplx_a/bsu_C.
    IPR000194. ATPase_F1/V1/A1_a/bsu_nucl-bd.
    IPR004100. ATPase_F1_a/bsu_N.
    IPR024034. ATPase_F1_bsu/V1_C.
    IPR027417. P-loop_NTPase.
    [Graphical view]
    PANTHERiPTHR15184:SF8. PTHR15184:SF8. 1 hit.
    PfamiPF00006. ATP-synt_ab. 1 hit.
    PF00306. ATP-synt_ab_C. 1 hit.
    PF02874. ATP-synt_ab_N. 1 hit.
    [Graphical view]
    SMARTiSM00382. AAA. 1 hit.
    [Graphical view]
    SUPFAMiSSF47917. SSF47917. 1 hit.
    SSF50615. SSF50615. 1 hit.
    SSF52540. SSF52540. 1 hit.
    TIGRFAMsiTIGR01039. atpD. 1 hit.
    PROSITEiPS00152. ATPASE_ALPHA_BETA. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P26527-1 [UniParc]FASTAAdd to Basket

    « Hide

    MVAVKEATNV GKITQVIGPV IDAQFPSGKL PRIYNALKVQ GRNSAGNEVA    50
    VTCEVQQLLG DNQVRAVAMS STDGLVRGMD VVDTGAPISV PVGTGTLGRI 100
    FNVLGEPVDN KGPVPAGETF PIHRPAPKLV DLETKPQVFE TGIKVIDLLT 150
    PYRQGGKIGL FGGAGVGKTV IMMELINNIA IQHGGVSVFG GVGERTREGN 200
    DLYNEMIESN VINADKPEES KIALVYGQMN EPPGARMRVG LTALTMAEYF 250
    RDVNKQDVLL FIDNIFRFVQ AGSEVSALLG RMPSAVGYQP TLGTDVGDLQ 300
    ERITSTKEGS ITSIQAVYVP ADDLTDPAPA TTFAHLDGTT VLSRGLAAKG 350
    IYPAVDPLDS TSTMLQPSIV GSEHYDTARE VQSTLQRYKE LQDIIAILGL 400
    DELSEEDRLT VDRARKIERF LSQPFFVAEV FTGAPGKYVS LADTIKGFKA 450
    ILAGELDDLP EQAFYLVGDI EEAKAKGAKL KEG 483
    Length:483
    Mass (Da):51,733
    Last modified:August 1, 1992 - v1
    Checksum:i106735D6E4045737
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X58129 Genomic DNA. Translation: CAA41137.1.
    BA000022 Genomic DNA. Translation: BAA18087.1.
    PIRiS17753. PWYBB.
    RefSeqiNP_441407.1. NC_000911.1.
    YP_005651465.1. NC_017277.1.
    YP_007451289.1. NC_020286.1.

    Genome annotation databases

    EnsemblBacteriaiBAA18087; BAA18087; BAA18087.
    GeneIDi954763.
    KEGGisyn:slr1329.
    syy:SYNGTS_1512.
    syz:MYO_115250.
    PATRICi23840211. VBISynSp132158_1665.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X58129 Genomic DNA. Translation: CAA41137.1 .
    BA000022 Genomic DNA. Translation: BAA18087.1 .
    PIRi S17753. PWYBB.
    RefSeqi NP_441407.1. NC_000911.1.
    YP_005651465.1. NC_017277.1.
    YP_007451289.1. NC_020286.1.

    3D structure databases

    ProteinModelPortali P26527.
    SMRi P26527. Positions 9-475.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    IntActi P26527. 7 interactions.
    STRINGi 1148.slr1329.

    Proteomic databases

    PaxDbi P26527.
    PRIDEi P26527.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAA18087 ; BAA18087 ; BAA18087 .
    GeneIDi 954763.
    KEGGi syn:slr1329.
    syy:SYNGTS_1512.
    syz:MYO_115250.
    PATRICi 23840211. VBISynSp132158_1665.

    Phylogenomic databases

    eggNOGi COG0055.
    HOGENOMi HOG000009605.
    KOi K02112.
    OMAi NPAGQDV.
    OrthoDBi EOG6HQSP3.
    PhylomeDBi P26527.

    Family and domain databases

    Gene3Di 1.10.1140.10. 1 hit.
    3.40.50.300. 1 hit.
    HAMAPi MF_01347. ATP_synth_beta_bact.
    InterProi IPR003593. AAA+_ATPase.
    IPR020003. ATPase_a/bsu_AS.
    IPR005722. ATPase_F1-cplx_bsu.
    IPR000793. ATPase_F1/V1/A1-cplx_a/bsu_C.
    IPR000194. ATPase_F1/V1/A1_a/bsu_nucl-bd.
    IPR004100. ATPase_F1_a/bsu_N.
    IPR024034. ATPase_F1_bsu/V1_C.
    IPR027417. P-loop_NTPase.
    [Graphical view ]
    PANTHERi PTHR15184:SF8. PTHR15184:SF8. 1 hit.
    Pfami PF00006. ATP-synt_ab. 1 hit.
    PF00306. ATP-synt_ab_C. 1 hit.
    PF02874. ATP-synt_ab_N. 1 hit.
    [Graphical view ]
    SMARTi SM00382. AAA. 1 hit.
    [Graphical view ]
    SUPFAMi SSF47917. SSF47917. 1 hit.
    SSF50615. SSF50615. 1 hit.
    SSF52540. SSF52540. 1 hit.
    TIGRFAMsi TIGR01039. atpD. 1 hit.
    PROSITEi PS00152. ATPASE_ALPHA_BETA. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The atp1 and atp2 operons of the cyanobacterium Synechocystis sp. PCC 6803."
      Lill H., Nelson N.
      Plant Mol. Biol. 17:641-652(1991) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    2. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
      Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
      , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
      DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: PCC 6803 / Kazusa.

    Entry informationi

    Entry nameiATPB_SYNY3
    AccessioniPrimary (citable) accession number: P26527
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: August 1, 1992
    Last sequence update: August 1, 1992
    Last modified: October 1, 2014
    This is version 120 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families
    2. Synechocystis PCC 6803
      Synechocystis (strain PCC 6803): entries and gene names

    External Data

    Dasty 3