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P26527

- ATPB_SYNY3

UniProt

P26527 - ATPB_SYNY3

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Protein

ATP synthase subunit beta

Gene

atpD

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi

Functioni

Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.UniRule annotation

Catalytic activityi

ATP + H2O + H+(In) = ADP + phosphate + H+(Out).UniRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi162 – 1698ATPUniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-HAMAP
  2. proton-transporting ATP synthase activity, rotational mechanism Source: UniProtKB-HAMAP

GO - Biological processi

  1. ATP hydrolysis coupled proton transport Source: InterPro
  2. plasma membrane ATP synthesis coupled proton transport Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Hydrolase

Keywords - Biological processi

ATP synthesis, Hydrogen ion transport, Ion transport, Transport

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
ATP synthase subunit betaUniRule annotation (EC:3.6.3.14UniRule annotation)
Alternative name(s):
ATP synthase F1 sector subunit betaUniRule annotation
F-ATPase subunit betaUniRule annotation
Gene namesi
Name:atpDUniRule annotation
Synonyms:atpBUniRule annotation
Ordered Locus Names:slr1329
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
ProteomesiUP000001425: Chromosome

Subcellular locationi

Cellular thylakoid membrane UniRule annotation; Peripheral membrane protein UniRule annotation

GO - Cellular componenti

  1. plasma membrane proton-transporting ATP synthase complex Source: UniProtKB
  2. proton-transporting ATP synthase complex, catalytic core F(1) Source: UniProtKB-KW
  3. thylakoid membrane Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Cellular componenti

CF(1), Membrane, Thylakoid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 483483ATP synthase subunit betaPRO_0000144483Add
BLAST

Proteomic databases

PaxDbiP26527.
PRIDEiP26527.

Interactioni

Subunit structurei

F-type ATPases have 2 components, CF1 - the catalytic core - and CF0 - the membrane proton channel. CF1 has five subunits: alpha3, beta3, gamma1, delta1, epsilon1. CF0 has four main subunits: a1, b1, b'1 and c(9-12).UniRule annotation

Protein-protein interaction databases

IntActiP26527. 7 interactions.
STRINGi1148.slr1329.

Structurei

3D structure databases

ProteinModelPortaliP26527.
SMRiP26527. Positions 9-475.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ATPase alpha/beta chains family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0055.
HOGENOMiHOG000009605.
InParanoidiP26527.
KOiK02112.
OMAiNPAGQDV.
OrthoDBiEOG6HQSP3.
PhylomeDBiP26527.

Family and domain databases

Gene3Di1.10.1140.10. 1 hit.
3.40.50.300. 1 hit.
HAMAPiMF_01347. ATP_synth_beta_bact.
InterProiIPR003593. AAA+_ATPase.
IPR020003. ATPase_a/bsu_AS.
IPR005722. ATPase_F1-cplx_bsu.
IPR000793. ATPase_F1/V1/A1-cplx_a/bsu_C.
IPR000194. ATPase_F1/V1/A1_a/bsu_nucl-bd.
IPR004100. ATPase_F1_a/bsu_N.
IPR024034. ATPase_F1_bsu/V1_C.
IPR027417. P-loop_NTPase.
[Graphical view]
PANTHERiPTHR15184:SF8. PTHR15184:SF8. 1 hit.
PfamiPF00006. ATP-synt_ab. 1 hit.
PF00306. ATP-synt_ab_C. 1 hit.
PF02874. ATP-synt_ab_N. 1 hit.
[Graphical view]
SMARTiSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMiSSF47917. SSF47917. 1 hit.
SSF50615. SSF50615. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR01039. atpD. 1 hit.
PROSITEiPS00152. ATPASE_ALPHA_BETA. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P26527-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MVAVKEATNV GKITQVIGPV IDAQFPSGKL PRIYNALKVQ GRNSAGNEVA
60 70 80 90 100
VTCEVQQLLG DNQVRAVAMS STDGLVRGMD VVDTGAPISV PVGTGTLGRI
110 120 130 140 150
FNVLGEPVDN KGPVPAGETF PIHRPAPKLV DLETKPQVFE TGIKVIDLLT
160 170 180 190 200
PYRQGGKIGL FGGAGVGKTV IMMELINNIA IQHGGVSVFG GVGERTREGN
210 220 230 240 250
DLYNEMIESN VINADKPEES KIALVYGQMN EPPGARMRVG LTALTMAEYF
260 270 280 290 300
RDVNKQDVLL FIDNIFRFVQ AGSEVSALLG RMPSAVGYQP TLGTDVGDLQ
310 320 330 340 350
ERITSTKEGS ITSIQAVYVP ADDLTDPAPA TTFAHLDGTT VLSRGLAAKG
360 370 380 390 400
IYPAVDPLDS TSTMLQPSIV GSEHYDTARE VQSTLQRYKE LQDIIAILGL
410 420 430 440 450
DELSEEDRLT VDRARKIERF LSQPFFVAEV FTGAPGKYVS LADTIKGFKA
460 470 480
ILAGELDDLP EQAFYLVGDI EEAKAKGAKL KEG
Length:483
Mass (Da):51,733
Last modified:August 1, 1992 - v1
Checksum:i106735D6E4045737
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X58129 Genomic DNA. Translation: CAA41137.1.
BA000022 Genomic DNA. Translation: BAA18087.1.
PIRiS17753. PWYBB.
RefSeqiNP_441407.1. NC_000911.1.
YP_005651465.1. NC_017277.1.
YP_007451289.1. NC_020286.1.

Genome annotation databases

EnsemblBacteriaiBAA18087; BAA18087; BAA18087.
GeneIDi954763.
KEGGisyn:slr1329.
syy:SYNGTS_1512.
syz:MYO_115250.
PATRICi23840211. VBISynSp132158_1665.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X58129 Genomic DNA. Translation: CAA41137.1 .
BA000022 Genomic DNA. Translation: BAA18087.1 .
PIRi S17753. PWYBB.
RefSeqi NP_441407.1. NC_000911.1.
YP_005651465.1. NC_017277.1.
YP_007451289.1. NC_020286.1.

3D structure databases

ProteinModelPortali P26527.
SMRi P26527. Positions 9-475.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

IntActi P26527. 7 interactions.
STRINGi 1148.slr1329.

Proteomic databases

PaxDbi P26527.
PRIDEi P26527.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAA18087 ; BAA18087 ; BAA18087 .
GeneIDi 954763.
KEGGi syn:slr1329.
syy:SYNGTS_1512.
syz:MYO_115250.
PATRICi 23840211. VBISynSp132158_1665.

Phylogenomic databases

eggNOGi COG0055.
HOGENOMi HOG000009605.
InParanoidi P26527.
KOi K02112.
OMAi NPAGQDV.
OrthoDBi EOG6HQSP3.
PhylomeDBi P26527.

Family and domain databases

Gene3Di 1.10.1140.10. 1 hit.
3.40.50.300. 1 hit.
HAMAPi MF_01347. ATP_synth_beta_bact.
InterProi IPR003593. AAA+_ATPase.
IPR020003. ATPase_a/bsu_AS.
IPR005722. ATPase_F1-cplx_bsu.
IPR000793. ATPase_F1/V1/A1-cplx_a/bsu_C.
IPR000194. ATPase_F1/V1/A1_a/bsu_nucl-bd.
IPR004100. ATPase_F1_a/bsu_N.
IPR024034. ATPase_F1_bsu/V1_C.
IPR027417. P-loop_NTPase.
[Graphical view ]
PANTHERi PTHR15184:SF8. PTHR15184:SF8. 1 hit.
Pfami PF00006. ATP-synt_ab. 1 hit.
PF00306. ATP-synt_ab_C. 1 hit.
PF02874. ATP-synt_ab_N. 1 hit.
[Graphical view ]
SMARTi SM00382. AAA. 1 hit.
[Graphical view ]
SUPFAMi SSF47917. SSF47917. 1 hit.
SSF50615. SSF50615. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsi TIGR01039. atpD. 1 hit.
PROSITEi PS00152. ATPASE_ALPHA_BETA. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The atp1 and atp2 operons of the cyanobacterium Synechocystis sp. PCC 6803."
    Lill H., Nelson N.
    Plant Mol. Biol. 17:641-652(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
    Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
    , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PCC 6803 / Kazusa.

Entry informationi

Entry nameiATPB_SYNY3
AccessioniPrimary (citable) accession number: P26527
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 1, 1992
Last sequence update: August 1, 1992
Last modified: October 29, 2014
This is version 121 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Synechocystis PCC 6803
    Synechocystis (strain PCC 6803): entries and gene names

External Data

Dasty 3