ATP synthase subunit beta - Synechocystis sp. (strain PCC 6803 / Kazusa)

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P26527 (ATPB_SYNY3) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 110. History...

Clusters with 100%, 90%, 50% identity |

Documents (2) |

Third-party data

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents Customize order

Names and origin

Protein names

Recommended name:
ATP synthase subunit beta
EC=3.6.3.14

Alternative name(s):
ATP synthase F1 sector subunit beta
F-ATPase subunit beta

Gene names

Name:	atpD
Synonyms:	atpB
Ordered Locus Names:	slr1329

Organism

Synechocystis sp. (strain PCC 6803 / Kazusa) [Reference proteome] [HAMAP]

Taxonomic identifier

1111708 [NCBI]

Taxonomic lineage

Bacteria › Cyanobacteria › Oscillatoriophycideae › Chroococcales › Synechocystis ›

Protein attributes

Sequence length	483 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits By similarity. HAMAP-Rule MF_01347
Catalytic activity	ATP + H₂O + H⁺(In) = ADP + phosphate + H⁺(Out). HAMAP-Rule MF_01347
Subunit structure	F-type ATPases have 2 components, CF₁ - the catalytic core - and CF₀ - the membrane proton channel. CF₁ has five subunits: alpha₃, beta₃, gamma₁, delta₁, epsilon₁. CF₀ has four main subunits: a₁, b₁, b'₁ and c(9-12) By similarity.
Subcellular location	Cellular thylakoid membrane; Peripheral membrane protein By similarity HAMAP-Rule MF_01347.
Sequence similarities	Belongs to the ATPase alpha/beta chains family.

Ontologies

Keywords
Biological process	ATP synthesis Hydrogen ion transport Ion transport Transport
Cellular component	CF(1) Membrane Thylakoid
Ligand	ATP-binding Nucleotide-binding
Molecular function	Hydrolase
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	ATP hydrolysis coupled proton transport Inferred from electronic annotation. Source: InterPro plasma membrane ATP synthesis coupled proton transport Inferred from electronic annotation. Source: HAMAP
Cellular_component	plasma membrane proton-transporting ATP synthase complex Inferred from direct assay PubMed 14730074. Source: UniProtKB proton-transporting ATP synthase complex, catalytic core F(1) Inferred from electronic annotation. Source: UniProtKB-KW thylakoid membrane Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	ATP binding Inferred from electronic annotation. Source: HAMAP proton-transporting ATP synthase activity, rotational mechanism Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

1 – 483

483

ATP synthase subunit beta HAMAP-Rule MF_01347

PRO_0000144483

Regions

Nucleotide binding

162 – 169

ATP By similarity

Sequences

Sequence

Length

Mass (Da)

Tools

P26527 [UniParc].

Last modified August 1, 1992. Version 1.
Checksum: 106735D6E4045737
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FASTA

483

51,733

        10         20         30         40         50         60 
MVAVKEATNV GKITQVIGPV IDAQFPSGKL PRIYNALKVQ GRNSAGNEVA VTCEVQQLLG 

        70         80         90        100        110        120 
DNQVRAVAMS STDGLVRGMD VVDTGAPISV PVGTGTLGRI FNVLGEPVDN KGPVPAGETF 

       130        140        150        160        170        180 
PIHRPAPKLV DLETKPQVFE TGIKVIDLLT PYRQGGKIGL FGGAGVGKTV IMMELINNIA 

       190        200        210        220        230        240 
IQHGGVSVFG GVGERTREGN DLYNEMIESN VINADKPEES KIALVYGQMN EPPGARMRVG 

       250        260        270        280        290        300 
LTALTMAEYF RDVNKQDVLL FIDNIFRFVQ AGSEVSALLG RMPSAVGYQP TLGTDVGDLQ 

       310        320        330        340        350        360 
ERITSTKEGS ITSIQAVYVP ADDLTDPAPA TTFAHLDGTT VLSRGLAAKG IYPAVDPLDS 

       370        380        390        400        410        420 
TSTMLQPSIV GSEHYDTARE VQSTLQRYKE LQDIIAILGL DELSEEDRLT VDRARKIERF 

       430        440        450        460        470        480 
LSQPFFVAEV FTGAPGKYVS LADTIKGFKA ILAGELDDLP EQAFYLVGDI EEAKAKGAKL 


KEG

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References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The atp1 and atp2 operons of the cyanobacterium Synechocystis sp. PCC 6803." Lill H., Nelson N. Plant Mol. Biol. 17:641-652(1991) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]	"Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions." Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S. Tabata S. DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: PCC 6803 / Kazusa.

Cross-references

Sequence databases
EMBL GenBank DDBJ	X58129 Genomic DNA. Translation: CAA41137.1. BA000022 Genomic DNA. Translation: BAA18087.1.
PIR	PWYBB. S17753.
RefSeq	NP_441407.1. NC_000911.1. YP_005651465.1. NC_017277.1. YP_007451289.1. NC_020286.1.
3D structure databases
ProteinModelPortal	P26527.
SMR	P26527. Positions 9-475.
ModBase	Search...
Protein-protein interaction databases
IntAct	P26527. 7 interactions.
STRING	1148.slr1329.
Proteomic databases
PaxDb	P26527.
PRIDE	P26527.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	BAA18087; BAA18087; BAA18087.
GeneID	12254115. 14616947. 954763.
KEGG	syn:slr1329. syy:SYNGTS_1512.
PATRIC	23840211. VBISynSp132158_1665.
Phylogenomic databases
eggNOG	COG0055.
HOGENOM	HOG000009605.
KO	K02112.
OMA	MRVGLSA.
ProtClustDB	PRK09280.
Family and domain databases
Gene3D	1.10.1140.10. 1 hit.
HAMAP	MF_01347. ATP_synth_beta_bact.
InterPro	IPR003593. AAA+_ATPase. IPR020003. ATPase_a/bsu_AS. IPR004100. ATPase_a/bsu_N. IPR005722. ATPase_F1-cplx_bsu. IPR000793. ATPase_F1/V1/A1-cplx_a/bsu_C. IPR000194. ATPase_F1/V1/A1_a/bsu_nucl-bd. IPR024034. ATPase_F1_bsu/V1_C. [Graphical view]
PANTHER	PTHR15184:SF8. PTHR15184:SF8. 1 hit.
Pfam	PF00006. ATP-synt_ab. 1 hit. PF00306. ATP-synt_ab_C. 1 hit. PF02874. ATP-synt_ab_N. 1 hit. [Graphical view]
SMART	SM00382. AAA. 1 hit. [Graphical view]
SUPFAM	SSF47917. ATPase_a/b_C. 1 hit. SSF50615. ATPase_a/b_N. 1 hit.
TIGRFAMs	TIGR01039. atpD. 1 hit.
PROSITE	PS00152. ATPASE_ALPHA_BETA. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

ATPB_SYNY3

Accession

Primary (citable) accession number: P26527

Entry history

Integrated into UniProtKB/Swiss-Prot:	August 1, 1992
Last sequence update:	August 1, 1992
Last modified:	May 1, 2013
This is version 110 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program

Relevant documents

Synechocystis PCC 6803

Synechocystis (strain PCC 6803): entries and gene names

SIMILARITY comments

Index of protein domains and families

Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents

Preferred order of sections

Names and origin

Protein attributes

General annotation (Comments)

Ontologies

Sequence annotation (Features)

Molecule processing

Regions

Sequences

References

Cross-references

Sequence databases

3D structure databases

Protein-protein interaction databases

Proteomic databases

Protocols and materials databases

Genome annotation databases

Phylogenomic databases

Family and domain databases

Entry information

Relevant documents