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P26527 (ATPB_SYNY3) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 119. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
ATP synthase subunit beta

EC=3.6.3.14
Alternative name(s):
ATP synthase F1 sector subunit beta
F-ATPase subunit beta
Gene names
Name:atpD
Synonyms:atpB
Ordered Locus Names:slr1329
OrganismSynechocystis sp. (strain PCC 6803 / Kazusa) [Reference proteome] [HAMAP]
Taxonomic identifier1111708 [NCBI]
Taxonomic lineageBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis

Protein attributes

Sequence length483 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits By similarity. HAMAP-Rule MF_01347

Catalytic activity

ATP + H2O + H+(In) = ADP + phosphate + H+(Out). HAMAP-Rule MF_01347

Subunit structure

F-type ATPases have 2 components, CF1 - the catalytic core - and CF0 - the membrane proton channel. CF1 has five subunits: alpha3, beta3, gamma1, delta1, epsilon1. CF0 has four main subunits: a1, b1, b'1 and c(9-12) By similarity.

Subcellular location

Cellular thylakoid membrane; Peripheral membrane protein By similarity HAMAP-Rule MF_01347.

Sequence similarities

Belongs to the ATPase alpha/beta chains family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 483483ATP synthase subunit beta HAMAP-Rule MF_01347
PRO_0000144483

Regions

Nucleotide binding162 – 1698ATP By similarity

Sequences

Sequence LengthMass (Da)Tools
P26527 [UniParc].

Last modified August 1, 1992. Version 1.
Checksum: 106735D6E4045737

FASTA48351,733
        10         20         30         40         50         60 
MVAVKEATNV GKITQVIGPV IDAQFPSGKL PRIYNALKVQ GRNSAGNEVA VTCEVQQLLG 

        70         80         90        100        110        120 
DNQVRAVAMS STDGLVRGMD VVDTGAPISV PVGTGTLGRI FNVLGEPVDN KGPVPAGETF 

       130        140        150        160        170        180 
PIHRPAPKLV DLETKPQVFE TGIKVIDLLT PYRQGGKIGL FGGAGVGKTV IMMELINNIA 

       190        200        210        220        230        240 
IQHGGVSVFG GVGERTREGN DLYNEMIESN VINADKPEES KIALVYGQMN EPPGARMRVG 

       250        260        270        280        290        300 
LTALTMAEYF RDVNKQDVLL FIDNIFRFVQ AGSEVSALLG RMPSAVGYQP TLGTDVGDLQ 

       310        320        330        340        350        360 
ERITSTKEGS ITSIQAVYVP ADDLTDPAPA TTFAHLDGTT VLSRGLAAKG IYPAVDPLDS 

       370        380        390        400        410        420 
TSTMLQPSIV GSEHYDTARE VQSTLQRYKE LQDIIAILGL DELSEEDRLT VDRARKIERF 

       430        440        450        460        470        480 
LSQPFFVAEV FTGAPGKYVS LADTIKGFKA ILAGELDDLP EQAFYLVGDI EEAKAKGAKL 


KEG 

« Hide

References

« Hide 'large scale' references
[1]"The atp1 and atp2 operons of the cyanobacterium Synechocystis sp. PCC 6803."
Lill H., Nelson N.
Plant Mol. Biol. 17:641-652(1991) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]"Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S. expand/collapse author list , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: PCC 6803 / Kazusa.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
X58129 Genomic DNA. Translation: CAA41137.1.
BA000022 Genomic DNA. Translation: BAA18087.1.
PIRPWYBB. S17753.
RefSeqNP_441407.1. NC_000911.1.
YP_005651465.1. NC_017277.1.
YP_007451289.1. NC_020286.1.

3D structure databases

ProteinModelPortalP26527.
SMRP26527. Positions 9-475.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

IntActP26527. 7 interactions.
STRING1148.slr1329.

Proteomic databases

PaxDbP26527.
PRIDEP26527.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAA18087; BAA18087; BAA18087.
GeneID954763.
KEGGsyn:slr1329.
syy:SYNGTS_1512.
syz:MYO_115250.
PATRIC23840211. VBISynSp132158_1665.

Phylogenomic databases

eggNOGCOG0055.
HOGENOMHOG000009605.
KOK02112.
OMANPAGQDV.
OrthoDBEOG6HQSP3.
PhylomeDBP26527.

Family and domain databases

Gene3D1.10.1140.10. 1 hit.
3.40.50.300. 1 hit.
HAMAPMF_01347. ATP_synth_beta_bact.
InterProIPR003593. AAA+_ATPase.
IPR020003. ATPase_a/bsu_AS.
IPR005722. ATPase_F1-cplx_bsu.
IPR000793. ATPase_F1/V1/A1-cplx_a/bsu_C.
IPR000194. ATPase_F1/V1/A1_a/bsu_nucl-bd.
IPR004100. ATPase_F1_a/bsu_N.
IPR024034. ATPase_F1_bsu/V1_C.
IPR027417. P-loop_NTPase.
[Graphical view]
PANTHERPTHR15184:SF8. PTHR15184:SF8. 1 hit.
PfamPF00006. ATP-synt_ab. 1 hit.
PF00306. ATP-synt_ab_C. 1 hit.
PF02874. ATP-synt_ab_N. 1 hit.
[Graphical view]
SMARTSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMSSF47917. SSF47917. 1 hit.
SSF50615. SSF50615. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsTIGR01039. atpD. 1 hit.
PROSITEPS00152. ATPASE_ALPHA_BETA. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameATPB_SYNY3
AccessionPrimary (citable) accession number: P26527
Entry history
Integrated into UniProtKB/Swiss-Prot: August 1, 1992
Last sequence update: August 1, 1992
Last modified: July 9, 2014
This is version 119 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Synechocystis PCC 6803

Synechocystis (strain PCC 6803): entries and gene names

SIMILARITY comments

Index of protein domains and families