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Protein

Nucleoprotein

Gene

N

Organism
Tomato spotted wilt virus (strain Hawaiian) (TSWV)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Encapsidates the RNA.

GO - Molecular functioni

  1. RNA binding Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein

Keywords - Ligandi

RNA-binding, Viral nucleoprotein

Names & Taxonomyi

Protein namesi
Recommended name:
Nucleoprotein
Alternative name(s):
Nucleocapsid protein
Short name:
Protein N
Gene namesi
Name:N
OrganismiTomato spotted wilt virus (strain Hawaiian) (TSWV)
Taxonomic identifieri36416 [NCBI]
Taxonomic lineageiVirusesssRNA negative-strand virusesBunyaviridaeTospovirus
Virus hostiFrankliniella occidentalis (Western flower thrips) [TaxID: 133901]
Scirtothrips dorsalis [TaxID: 163899]
Solanum lycopersicum (Tomato) (Lycopersicon esculentum) [TaxID: 4081]
Thrips tabaci [TaxID: 161014]

Subcellular locationi

  1. Virion Curated

GO - Cellular componenti

  1. helical viral capsid Source: UniProtKB-KW
  2. viral nucleocapsid Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Capsid protein, Helical capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 258258NucleoproteinPRO_0000222003Add
BLAST

Family & Domainsi

Sequence similaritiesi

Family and domain databases

InterProiIPR002517. Tospo_nucleocap.
[Graphical view]
PfamiPF01533. Tospo_nucleocap. 1 hit.
[Graphical view]
PIRSFiPIRSF003948. N_TospoV. 1 hit.
ProDomiPD003056. Tospo_nucleocap. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

P26000-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKVKLTKES IVALLTQGKD LEFEEDQNLV AFNFKTFCLE NLDQIKKMSI
60 70 80 90 100
ISCLTFLKNR QSIMKVIKQS DFTFGKITIK KTSDRIGATD MTFRRLDSLI
110 120 130 140 150
RVRLVEETGN SENLNTIKSK IASHPLIQAY GLPLDDAKSV RLAIMLGGSL
160 170 180 190 200
PLIASVDSFE MISVVLAIYQ DAKYKDLGID PKKYDTREAL GKVCTVLKSK
210 220 230 240 250
AFEMNEDQVK KGKEYAAILS SSNPNAKGSI AMEHYSETLN KFYEMFGVKK

QAKLTELA
Length:258
Mass (Da):28,945
Last modified:May 1, 1992 - v1
Checksum:iCF349E9DD0AE77E3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X61799 mRNA. Translation: CAA43904.1.
PIRiS17105.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X61799 mRNA. Translation: CAA43904.1.
PIRiS17105.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

InterProiIPR002517. Tospo_nucleocap.
[Graphical view]
PfamiPF01533. Tospo_nucleocap. 1 hit.
[Graphical view]
PIRSFiPIRSF003948. N_TospoV. 1 hit.
ProDomiPD003056. Tospo_nucleocap. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetiSearch...

Publicationsi

  1. Kim J.W., Sun S.S.M., German T.L.
    Submitted (SEP-1991) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].

Entry informationi

Entry nameiNCAP_TSWVH
AccessioniPrimary (citable) accession number: P26000
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 1, 1992
Last sequence update: May 1, 1992
Last modified: April 29, 2015
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.