Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Small delta antigen

Gene
N/A
Organism
Hepatitis delta virus genotype I (isolate American) (HDV)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Promotes both transcription and replication of genomic RNA. Following virus entry into host cell, provides nuclear import of HDV RNPs thanks to its nuclear localization signal. May interact with host RNA polymerase II thereby changing its template requirement from DNA to RNA. RNA pol II complex would then acts as an RNA-directed RNA polymerase, and transcribe and replicate HDV genome (By similarity).By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Host-virus interaction, Viral penetration into host nucleus, Virus entry into host cell

Keywords - Ligandi

RNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Small delta antigen
Short name:
S-HDAg
Alternative name(s):
p24
OrganismiHepatitis delta virus genotype I (isolate American) (HDV)
Taxonomic identifieri10422 [NCBI]
Taxonomic lineageiVirusesDeltavirus
Virus hostiHomo sapiens (Human) [TaxID: 9606]
Proteomesi
  • UP000007708 Componenti: Genome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Host nucleus, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000381291 – 195Small delta antigenAdd BLAST195

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei2Phosphoserine; by host CK2By similarity1
Modified residuei13Omega-N-methylated arginine; by host PRMT1By similarity1
Modified residuei72N6-acetyllysine; by hostBy similarity1
Modified residuei123Phosphoserine; by hostBy similarity1
Modified residuei177Phosphoserine; by host MAPK1 and MAPK3By similarity1
Modified residuei182Phosphothreonine; by hostBy similarity1

Post-translational modificationi

Phosphorylated at serines and threonines by host MAPK1/3, PKR, and CK2.By similarity
Acetylation modulates nuclear localization. Neo-synthesized genomic RNA migrates from the nucleus to the cytoplasm, where they interact with S-HDAg, which once acetylated redirect both partners to the nucleus (By similarity).By similarity
Methylation plays a role in viral genome replication.By similarity

Keywords - PTMi

Acetylation, Methylation, Phosphoprotein

Interactioni

Subunit structurei

Homodimer. Homooctamer. Interacts with host RNA polymerase II complex, and with host NPM1.By similarity

Protein-protein interaction databases

MINTiMINT-196862.

Structurei

Secondary structure

1195
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi13 – 47Combined sources35
Helixi51 – 58Combined sources8

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1A92X-ray1.80A/B/C/D12-60[»]
1BY0NMR-A24-50[»]
SMRiP25989.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP25989.

Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni12 – 60DimerizationSequence analysisAdd BLAST49
Regioni97 – 107RNA-bindingSequence analysisAdd BLAST11
Regioni136 – 146RNA-bindingSequence analysisAdd BLAST11

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi66 – 75Nuclear localization signalBy similarity10

Sequence similaritiesi

Belongs to the hepatitis delta antigen family.Curated

Family and domain databases

Gene3Di4.10.220.40. 1 hit.
InterProiIPR027403. Delta_antigen_N.
IPR002506. HDV_ag.
[Graphical view]
PfamiPF01517. HDV_ag. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P25989-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSRSERRKDR GGREDILEQW VSGRKKLEEL ERDLRKLKKK IKKLEEDNPW
60 70 80 90 100
LGNIKGIIGK KDKDGEGAPP AKKLRMDQME IDAGPRKRPL RGGFTDKERQ
110 120 130 140 150
DHRRRKALEN KRKQLSSGGK SLSREEEEEL KRLTEEDEKR ERRIAGPSVG
160 170 180 190
GVNPLEGGSR GAPGGGFVPS MQGVPESPFA RTGEGLDIRG SQGFP
Length:195
Mass (Da):21,962
Last modified:April 14, 2009 - v2
Checksum:i32A13B0F464566F4
GO

RNA editingi

Edited at position 196.By similarity
Partially edited. RNA editing at this position occurs on the antigenomic strand and consists of a conversion of A to G catalyzed by the cellular enzyme ADAR1. The unedited RNA version gives rise to the small delta antigen, which ends with a nonsense codon at position 196. In the edited version, this amber codon is modified to a tryptophan codon and gives rise to the large delta antigen protein (AC P0C6L5). S-HDAg suppresses editing of non-replicating antigenomic RNA, thereby regulating the extent of editing (By similarity).By similarity

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M28267 Genomic RNA. Translation: AAA98112.1. Different termination.

Keywords - Coding sequence diversityi

RNA editing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M28267 Genomic RNA. Translation: AAA98112.1. Different termination.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1A92X-ray1.80A/B/C/D12-60[»]
1BY0NMR-A24-50[»]
SMRiP25989.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

MINTiMINT-196862.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Miscellaneous databases

EvolutionaryTraceiP25989.

Family and domain databases

Gene3Di4.10.220.40. 1 hit.
InterProiIPR027403. Delta_antigen_N.
IPR002506. HDV_ag.
[Graphical view]
PfamiPF01517. HDV_ag. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiSHDAG_HDVAM
AccessioniPrimary (citable) accession number: P25989
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 1, 1992
Last sequence update: April 14, 2009
Last modified: November 30, 2016
This is version 79 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Miscellaneous

This strain belongs to the genotype I found in North America, Europe, Africa, East and West Asia and the South Pacific.

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.