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P25974

- GLCB_SOYBN

UniProt

P25974 - GLCB_SOYBN

Protein

Beta-conglycinin, beta chain

Gene

CG-4

Organism
Glycine max (Soybean) (Glycine hispida)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 80 (01 Oct 2014)
      Sequence version 1 (01 May 1992)
      Previous versions | rss
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    Functioni

    Seed storage protein. Accumulates during seed development and is hydrolyzed after germination to provide a carbon and nitrogen source for the developing seedling.

    GO - Molecular functioni

    1. nutrient reservoir activity Source: UniProtKB-KW

    Keywords - Molecular functioni

    Seed storage protein, Storage protein

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Beta-conglycinin, beta chain
    Gene namesi
    Name:CG-4
    OrganismiGlycine max (Soybean) (Glycine hispida)
    Taxonomic identifieri3847 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsFabalesFabaceaePapilionoideaePhaseoleaeGlycineSoja
    ProteomesiUP000008827: Unplaced

    Subcellular locationi

    Vacuolealeurone grain
    Note: Embryo axis, and cotyledonary membrane-bound vacuolar protein bodies.

    GO - Cellular componenti

    1. aleurone grain Source: UniProtKB-SubCell
    2. vacuole Source: UniProtKB-KW

    Keywords - Cellular componenti

    Vacuole

    Pathology & Biotechi

    Protein family/group databases

    Allergomei5816. Gly m 5.
    5819. Gly m 5.0301.
    5820. Gly m 5.0302.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 2323By similarityAdd
    BLAST
    Propeptidei24 – 252Sequence AnalysisPRO_0000032190
    Chaini26 – 439414Beta-conglycinin, beta chainPRO_0000032191Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Glycosylationi351 – 3511N-linked (GlcNAc...)Sequence Analysis

    Keywords - PTMi

    Glycoprotein

    Expressioni

    Gene expression databases

    GenevestigatoriP25974.

    Interactioni

    Subunit structurei

    The alpha'-, alpha-, and beta-subunits associate in various combinations to form trimeric proteins.

    Structurei

    Secondary structure

    1
    439
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Helixi38 – 403
    Beta strandi41 – 477
    Beta strandi49 – 568
    Helixi59 – 624
    Helixi64 – 696
    Beta strandi73 – 797
    Beta strandi83 – 10119
    Beta strandi103 – 1086
    Beta strandi113 – 1186
    Beta strandi122 – 1265
    Beta strandi131 – 1366
    Beta strandi143 – 15412
    Beta strandi160 – 1645
    Beta strandi166 – 1683
    Helixi172 – 1754
    Helixi178 – 1858
    Helixi189 – 1968
    Helixi202 – 2043
    Beta strandi205 – 2128
    Helixi215 – 2217
    Helixi230 – 2345
    Beta strandi236 – 2383
    Helixi242 – 2443
    Beta strandi248 – 2503
    Beta strandi252 – 2598
    Turni261 – 2633
    Helixi265 – 2706
    Beta strandi272 – 2798
    Beta strandi283 – 29210
    Beta strandi294 – 31118
    Beta strandi327 – 3359
    Beta strandi339 – 3424
    Beta strandi348 – 36316
    Beta strandi370 – 3767
    Helixi381 – 3833
    Helixi386 – 3927
    Beta strandi393 – 3953
    Helixi397 – 4037
    Beta strandi411 – 4144

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1IPJX-ray2.70A/B/C24-439[»]
    1IPKX-ray2.70A/B/C24-439[»]
    1UIJX-ray2.50A/B/C/D/E/F24-439[»]
    ProteinModelPortaliP25974.
    SMRiP25974. Positions 26-415.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiP25974.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the 7S seed storage protein family.Curated

    Keywords - Domaini

    Signal

    Family and domain databases

    Gene3Di2.60.120.10. 2 hits.
    InterProiIPR006045. Cupin_1.
    IPR014710. RmlC-like_jellyroll.
    IPR011051. RmlC_Cupin.
    [Graphical view]
    PfamiPF00190. Cupin_1. 2 hits.
    [Graphical view]
    SMARTiSM00835. Cupin_1. 2 hits.
    [Graphical view]
    SUPFAMiSSF51182. SSF51182. 2 hits.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P25974-1 [UniParc]FASTAAdd to Basket

    « Hide

    MMRVRFPLLV LLGTVFLASV CVSLKVREDE NNPFYFRSSN SFQTLFENQN    50
    VRIRLLQRFN KRSPQLENLR DYRIVQFQSK PNTILLPHHA DADFLLFVLS 100
    GRAILTLVNN DDRDSYNLHP GDAQRIPAGT TYYLVNPHDH QNLKIIKLAI 150
    PVNKPGRYDD FFLSSTQAQQ SYLQGFSHNI LETSFHSEFE EINRVLFGEE 200
    EEQRQQEGVI VELSKEQIRQ LSRRAKSSSR KTISSEDEPF NLRSRNPIYS 250
    NNFGKFFEIT PEKNPQLRDL DIFLSSVDIN EGALLLPHFN SKAIVILVIN 300
    EGDANIELVG IKEQQQKQKQ EEEPLEVQRY RAELSEDDVF VIPAAYPFVV 350
    NATSNLNFLA FGINAENNQR NFLAGEKDNV VRQIERQVQE LAFPGSAQDV 400
    ERLLKKQRES YFVDAQPQQK EEGSKGRKGP FPSILGALY 439
    Length:439
    Mass (Da):50,552
    Last modified:May 1, 1992 - v1
    Checksum:iDBD8AA2A0776088B
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    S44893 Genomic DNA. Translation: AAB23463.1.
    PIRiJQ0969. FWSYCB.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    S44893 Genomic DNA. Translation: AAB23463.1 .
    PIRi JQ0969. FWSYCB.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1IPJ X-ray 2.70 A/B/C 24-439 [» ]
    1IPK X-ray 2.70 A/B/C 24-439 [» ]
    1UIJ X-ray 2.50 A/B/C/D/E/F 24-439 [» ]
    ProteinModelPortali P25974.
    SMRi P25974. Positions 26-415.
    ModBasei Search...
    MobiDBi Search...

    Protein family/group databases

    Allergomei 5816. Gly m 5.
    5819. Gly m 5.0301.
    5820. Gly m 5.0302.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Miscellaneous databases

    EvolutionaryTracei P25974.

    Gene expression databases

    Genevestigatori P25974.

    Family and domain databases

    Gene3Di 2.60.120.10. 2 hits.
    InterProi IPR006045. Cupin_1.
    IPR014710. RmlC-like_jellyroll.
    IPR011051. RmlC_Cupin.
    [Graphical view ]
    Pfami PF00190. Cupin_1. 2 hits.
    [Graphical view ]
    SMARTi SM00835. Cupin_1. 2 hits.
    [Graphical view ]
    SUPFAMi SSF51182. SSF51182. 2 hits.
    ProtoNeti Search...

    Publicationsi

    1. "Soybean beta-conglycinin genes are clustered in several DNA regions and are regulated by transcriptional and posttranscriptional processes."
      Harada J.J., Barker S.J., Goldberg R.B.
      Plant Cell 1:415-425(1989) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].

    Entry informationi

    Entry nameiGLCB_SOYBN
    AccessioniPrimary (citable) accession number: P25974
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 1, 1992
    Last sequence update: May 1, 1992
    Last modified: October 1, 2014
    This is version 80 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Reference proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3