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P25974

- GLCB_SOYBN

UniProt

P25974 - GLCB_SOYBN

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Protein

Beta-conglycinin, beta chain

Gene

CG-4

Organism
Glycine max (Soybean) (Glycine hispida)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli

Functioni

Seed storage protein. Accumulates during seed development and is hydrolyzed after germination to provide a carbon and nitrogen source for the developing seedling.

GO - Molecular functioni

  1. nutrient reservoir activity Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Seed storage protein, Storage protein

Names & Taxonomyi

Protein namesi
Recommended name:
Beta-conglycinin, beta chain
Gene namesi
Name:CG-4
OrganismiGlycine max (Soybean) (Glycine hispida)
Taxonomic identifieri3847 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsFabalesFabaceaePapilionoideaePhaseoleaeGlycineSoja
ProteomesiUP000008827: Unplaced

Subcellular locationi

Vacuolealeurone grain
Note: Embryo axis, and cotyledonary membrane-bound vacuolar protein bodies.

GO - Cellular componenti

  1. vacuole Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Vacuole

Pathology & Biotechi

Protein family/group databases

Allergomei5816. Gly m 5.
5819. Gly m 5.0301.
5820. Gly m 5.0302.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2323By similarityAdd
BLAST
Propeptidei24 – 252Sequence AnalysisPRO_0000032190
Chaini26 – 439414Beta-conglycinin, beta chainPRO_0000032191Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi351 – 3511N-linked (GlcNAc...)Sequence Analysis

Keywords - PTMi

Glycoprotein

Expressioni

Gene expression databases

GenevestigatoriP25974.

Interactioni

Subunit structurei

The alpha'-, alpha-, and beta-subunits associate in various combinations to form trimeric proteins.

Structurei

Secondary structure

1
439
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi38 – 403
Beta strandi41 – 477
Beta strandi49 – 568
Helixi59 – 624
Helixi64 – 696
Beta strandi73 – 797
Beta strandi83 – 10119
Beta strandi103 – 1086
Beta strandi113 – 1186
Beta strandi122 – 1265
Beta strandi131 – 1366
Beta strandi143 – 15412
Beta strandi160 – 1645
Beta strandi166 – 1683
Helixi172 – 1754
Helixi178 – 1858
Helixi189 – 1968
Helixi202 – 2043
Beta strandi205 – 2128
Helixi215 – 2217
Helixi230 – 2345
Beta strandi236 – 2383
Helixi242 – 2443
Beta strandi248 – 2503
Beta strandi252 – 2598
Turni261 – 2633
Helixi265 – 2706
Beta strandi272 – 2798
Beta strandi283 – 29210
Beta strandi294 – 31118
Beta strandi327 – 3359
Beta strandi339 – 3424
Beta strandi348 – 36316
Beta strandi370 – 3767
Helixi381 – 3833
Helixi386 – 3927
Beta strandi393 – 3953
Helixi397 – 4037
Beta strandi411 – 4144

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1IPJX-ray2.70A/B/C24-439[»]
1IPKX-ray2.70A/B/C24-439[»]
1UIJX-ray2.50A/B/C/D/E/F24-439[»]
ProteinModelPortaliP25974.
SMRiP25974. Positions 26-415.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP25974.

Family & Domainsi

Sequence similaritiesi

Belongs to the 7S seed storage protein family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

InParanoidiP25974.

Family and domain databases

Gene3Di2.60.120.10. 2 hits.
InterProiIPR006045. Cupin_1.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF00190. Cupin_1. 2 hits.
[Graphical view]
SMARTiSM00835. Cupin_1. 2 hits.
[Graphical view]
SUPFAMiSSF51182. SSF51182. 2 hits.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P25974-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MMRVRFPLLV LLGTVFLASV CVSLKVREDE NNPFYFRSSN SFQTLFENQN
60 70 80 90 100
VRIRLLQRFN KRSPQLENLR DYRIVQFQSK PNTILLPHHA DADFLLFVLS
110 120 130 140 150
GRAILTLVNN DDRDSYNLHP GDAQRIPAGT TYYLVNPHDH QNLKIIKLAI
160 170 180 190 200
PVNKPGRYDD FFLSSTQAQQ SYLQGFSHNI LETSFHSEFE EINRVLFGEE
210 220 230 240 250
EEQRQQEGVI VELSKEQIRQ LSRRAKSSSR KTISSEDEPF NLRSRNPIYS
260 270 280 290 300
NNFGKFFEIT PEKNPQLRDL DIFLSSVDIN EGALLLPHFN SKAIVILVIN
310 320 330 340 350
EGDANIELVG IKEQQQKQKQ EEEPLEVQRY RAELSEDDVF VIPAAYPFVV
360 370 380 390 400
NATSNLNFLA FGINAENNQR NFLAGEKDNV VRQIERQVQE LAFPGSAQDV
410 420 430
ERLLKKQRES YFVDAQPQQK EEGSKGRKGP FPSILGALY
Length:439
Mass (Da):50,552
Last modified:May 1, 1992 - v1
Checksum:iDBD8AA2A0776088B
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
S44893 Genomic DNA. Translation: AAB23463.1.
PIRiJQ0969. FWSYCB.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
S44893 Genomic DNA. Translation: AAB23463.1 .
PIRi JQ0969. FWSYCB.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1IPJ X-ray 2.70 A/B/C 24-439 [» ]
1IPK X-ray 2.70 A/B/C 24-439 [» ]
1UIJ X-ray 2.50 A/B/C/D/E/F 24-439 [» ]
ProteinModelPortali P25974.
SMRi P25974. Positions 26-415.
ModBasei Search...
MobiDBi Search...

Protein family/group databases

Allergomei 5816. Gly m 5.
5819. Gly m 5.0301.
5820. Gly m 5.0302.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Phylogenomic databases

InParanoidi P25974.

Miscellaneous databases

EvolutionaryTracei P25974.

Gene expression databases

Genevestigatori P25974.

Family and domain databases

Gene3Di 2.60.120.10. 2 hits.
InterProi IPR006045. Cupin_1.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view ]
Pfami PF00190. Cupin_1. 2 hits.
[Graphical view ]
SMARTi SM00835. Cupin_1. 2 hits.
[Graphical view ]
SUPFAMi SSF51182. SSF51182. 2 hits.
ProtoNeti Search...

Publicationsi

  1. "Soybean beta-conglycinin genes are clustered in several DNA regions and are regulated by transcriptional and posttranscriptional processes."
    Harada J.J., Barker S.J., Goldberg R.B.
    Plant Cell 1:415-425(1989) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].

Entry informationi

Entry nameiGLCB_SOYBN
AccessioniPrimary (citable) accession number: P25974
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 1, 1992
Last sequence update: May 1, 1992
Last modified: October 29, 2014
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3