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Protein

Uncharacterized protein YdbD

Gene

ydbD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Biological processi

  • response to methylglyoxal Source: EcoCyc
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:EG11310-MONOMER.
ECOL316407:JW5221-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YdbD
Gene namesi
Name:ydbD
Ordered Locus Names:b1407, JW5221
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11310. ydbD.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001689211 – 768Uncharacterized protein YdbDAdd BLAST768

Proteomic databases

PaxDbiP25907.
PRIDEiP25907.

Interactioni

Protein-protein interaction databases

BioGridi4263020. 8 interactors.
IntActiP25907. 2 interactors.
STRINGi511145.b1407.

Structurei

3D structure databases

ProteinModelPortaliP25907.
SMRiP25907.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To E.coli YkiA.Curated

Phylogenomic databases

HOGENOMiHOG000009727.
OMAiEGWDFLE.

Family and domain databases

InterProiIPR024497. DUF2773.
[Graphical view]
PfamiPF10971. DUF2773. 1 hit.
[Graphical view]
ProDomiPD029376. PD029376. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

P25907-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLKARNCGWI RLLPLFMLSL PVQAELRCVA NAVDIESFFS AATAEDKQQV
60 70 80 90 100
EQAINSSVNL VPFGLSASNW KVHRGDLVVE GNIESNQKLI VLGNLTVKGN
110 120 130 140 150
ISTFSLSNPW VILGNVTATN IVADSPLLIT GSINASGLVF IDSYYDNPST
160 170 180 190 200
IKGSINARGI FINDIIAPVV ASSTNSEFMV RASDKHDTEN VKKALMIINP
210 220 230 240 250
DAYYWGLIND EDALKEIFKR SNIRMAGNVC NQMKKEALFR PKPSPELVQE
260 270 280 290 300
LQMLDEGKVA AFEGRDIATF DLAVMRTLPR LKGISANLRK QLINSNDEQT
310 320 330 340 350
IESMARYMPD NEILELTDQQ LGYQPVVLGL LDREPLSVEI MTRMSRLPDG
360 370 380 390 400
VGPLNLALRE NLPLDIVMTL AKRDWDMIIQ ELYKDAWLLP ESIIDGYIRS
410 420 430 440 450
DDSSIRQVGA GGQLTYNQAM QLANDSSNNV VTSLAFKLAE MKHHGQLLRM
460 470 480 490 500
TPQESDKVAG YLYQKFENDD DLIRVLFLAL PDNLQFNFVK RMEKKSPAYF
510 520 530 540 550
CCRDMQVIHS DAALQRLLTR FNDPEGWSNL AKNQYLSTSM KQKIWQRALS
560 570 580 590 600
HRKNNPKADS DAYETSADMI LSELISHGEV DDQMLLNATA LIRSDDWDFL
610 620 630 640 650
ESALISWDNL PAVVLKELQQ NTPRNDIWAK FFLRQENSSR AQVDEALRVY
660 670 680 690 700
YALDPDALAQ LDVLAKQPDR IWWSTLAKSN LTFFKFGALN NRHTPPAVLA
710 720 730 740 750
AEIDPEWWIV AMNNPRFPVD VLKARLKRDP LLALELVNPE LDLVRQLALN
760
GKTRAIREQA MRKLDELY
Length:768
Mass (Da):86,716
Last modified:November 1, 1997 - v2
Checksum:iA4B01C15871D1DA2
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti347L → Y in CAA44554 (PubMed:1665988).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74489.2.
AP009048 Genomic DNA. Translation: BAA15022.2.
X62680 Genomic DNA. Translation: CAA44554.1.
PIRiB64892.
RefSeqiNP_415925.2. NC_000913.3.
WP_000910026.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74489; AAC74489; b1407.
BAA15022; BAA15022; BAA15022.
GeneIDi945983.
KEGGiecj:JW5221.
eco:b1407.
PATRICi32118100. VBIEscCol129921_1470.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74489.2.
AP009048 Genomic DNA. Translation: BAA15022.2.
X62680 Genomic DNA. Translation: CAA44554.1.
PIRiB64892.
RefSeqiNP_415925.2. NC_000913.3.
WP_000910026.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP25907.
SMRiP25907.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4263020. 8 interactors.
IntActiP25907. 2 interactors.
STRINGi511145.b1407.

Proteomic databases

PaxDbiP25907.
PRIDEiP25907.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74489; AAC74489; b1407.
BAA15022; BAA15022; BAA15022.
GeneIDi945983.
KEGGiecj:JW5221.
eco:b1407.
PATRICi32118100. VBIEscCol129921_1470.

Organism-specific databases

EchoBASEiEB1286.
EcoGeneiEG11310. ydbD.

Phylogenomic databases

HOGENOMiHOG000009727.
OMAiEGWDFLE.

Enzyme and pathway databases

BioCyciEcoCyc:EG11310-MONOMER.
ECOL316407:JW5221-MONOMER.

Miscellaneous databases

PROiP25907.

Family and domain databases

InterProiIPR024497. DUF2773.
[Graphical view]
PfamiPF10971. DUF2773. 1 hit.
[Graphical view]
ProDomiPD029376. PD029376. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetiSearch...

Entry informationi

Entry nameiYDBD_ECOLI
AccessioniPrimary (citable) accession number: P25907
Secondary accession number(s): P76089, P76860, P76862
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 1, 1992
Last sequence update: November 1, 1997
Last modified: November 2, 2016
This is version 100 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.