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Protein

Putative oxidoreductase YdbC

Gene

ydbC

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei59 – 591Proton donorBy similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi210 – 2189NADPBy similarity

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Ligandi

NADP

Enzyme and pathway databases

BioCyciEcoCyc:EG11309-MONOMER.
ECOL316407:JW1403-MONOMER.
RETL1328306-WGS:GSTH-6802-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative oxidoreductase YdbC (EC:1.-.-.-)
Gene namesi
Name:ydbC
Ordered Locus Names:b1406, JW1403
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11309. ydbC.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 286286Putative oxidoreductase YdbCPRO_0000070393Add
BLAST

Proteomic databases

PaxDbiP25906.
PRIDEiP25906.

2D gel databases

SWISS-2DPAGEP25906.

Interactioni

Protein-protein interaction databases

BioGridi4263019. 9 interactions.
DIPiDIP-11632N.
IntActiP25906. 4 interactions.
STRINGi511145.b1406.

Structurei

3D structure databases

ProteinModelPortaliP25906.
SMRiP25906. Positions 8-281.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4107S5I. Bacteria.
ENOG410XRV3. LUCA.
HOGENOMiHOG000250284.
InParanoidiP25906.
OMAiVNLRVMF.
PhylomeDBiP25906.

Family and domain databases

CDDicd06660. Aldo_ket_red. 1 hit.
Gene3Di3.20.20.100. 1 hit.
InterProiIPR001395. Aldo/ket_red/Kv-b.
IPR023210. NADP_OxRdtase_dom.
[Graphical view]
PANTHERiPTHR11732. PTHR11732. 1 hit.
PfamiPF00248. Aldo_ket_red. 1 hit.
[Graphical view]
SUPFAMiSSF51430. SSF51430. 1 hit.

Sequencei

Sequence statusi: Complete.

P25906-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSNTFTLGT KSVNRLGYGA MQLAGPGVFG PPRDRHVAIT VLREALALGV
60 70 80 90 100
NHIDTSDFYG PHVTNQIIRE ALYPYSDDLT IVTKIGARRG EDASWLPAFS
110 120 130 140 150
PAELQKAVHD NLRNLGLDVL DVVNLRVMMG DGHGPAEGSI EASLTVLAEM
160 170 180 190 200
QQQGLVKHIG LSNVTPTQVA EARKIAEIVC VQNEYNIAHR ADDAMIDALA
210 220 230 240 250
HDGIAYVPFF PLGGFTPLQS STLSDVAASL GATPMQVALA WLLQRSPNIL
260 270 280
LIPGTSSVAH LRENMAAEKL HLSEEVLSTL DGISRE
Length:286
Mass (Da):30,706
Last modified:May 1, 1992 - v1
Checksum:i82B587AEA9115EF9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X62680 Genomic DNA. Translation: CAA44553.1.
U00096 Genomic DNA. Translation: AAC74488.1.
AP009048 Genomic DNA. Translation: BAA15021.1.
X97452 Genomic DNA. Translation: CAA66103.1.
PIRiA48399.
RefSeqiNP_415924.1. NC_000913.3.
WP_000097801.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74488; AAC74488; b1406.
BAA15021; BAA15021; BAA15021.
GeneIDi945980.
KEGGiecj:JW1403.
eco:b1406.
PATRICi32118098. VBIEscCol129921_1469.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X62680 Genomic DNA. Translation: CAA44553.1.
U00096 Genomic DNA. Translation: AAC74488.1.
AP009048 Genomic DNA. Translation: BAA15021.1.
X97452 Genomic DNA. Translation: CAA66103.1.
PIRiA48399.
RefSeqiNP_415924.1. NC_000913.3.
WP_000097801.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP25906.
SMRiP25906. Positions 8-281.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4263019. 9 interactions.
DIPiDIP-11632N.
IntActiP25906. 4 interactions.
STRINGi511145.b1406.

2D gel databases

SWISS-2DPAGEP25906.

Proteomic databases

PaxDbiP25906.
PRIDEiP25906.

Protocols and materials databases

DNASUi945980.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74488; AAC74488; b1406.
BAA15021; BAA15021; BAA15021.
GeneIDi945980.
KEGGiecj:JW1403.
eco:b1406.
PATRICi32118098. VBIEscCol129921_1469.

Organism-specific databases

EchoBASEiEB1285.
EcoGeneiEG11309. ydbC.

Phylogenomic databases

eggNOGiENOG4107S5I. Bacteria.
ENOG410XRV3. LUCA.
HOGENOMiHOG000250284.
InParanoidiP25906.
OMAiVNLRVMF.
PhylomeDBiP25906.

Enzyme and pathway databases

BioCyciEcoCyc:EG11309-MONOMER.
ECOL316407:JW1403-MONOMER.
RETL1328306-WGS:GSTH-6802-MONOMER.

Miscellaneous databases

PROiP25906.

Family and domain databases

CDDicd06660. Aldo_ket_red. 1 hit.
Gene3Di3.20.20.100. 1 hit.
InterProiIPR001395. Aldo/ket_red/Kv-b.
IPR023210. NADP_OxRdtase_dom.
[Graphical view]
PANTHERiPTHR11732. PTHR11732. 1 hit.
PfamiPF00248. Aldo_ket_red. 1 hit.
[Graphical view]
SUPFAMiSSF51430. SSF51430. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYDBC_ECOLI
AccessioniPrimary (citable) accession number: P25906
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 1, 1992
Last sequence update: May 1, 1992
Last modified: September 7, 2016
This is version 116 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.