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Protein

Glyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic

Gene

GAPB

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Involved in the photosynthetic reductive pentose phosphate pathway (Calvin-Benson cycle). Catalyzes the reduction of 1,3-diphosphoglycerate by NADPH (By similarity).By similarity

Catalytic activityi

D-glyceraldehyde 3-phosphate + phosphate + NADP+ = 3-phospho-D-glyceroyl phosphate + NADPH.

Pathwayi: Calvin cycle

This protein is involved in the pathway Calvin cycle, which is part of Carbohydrate biosynthesis.
View all proteins of this organism that are known to be involved in the pathway Calvin cycle and in Carbohydrate biosynthesis.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei115 – 1151NADPBy similarity
Binding sitei160 – 1601NADP; via carbonyl oxygenBy similarity
Active sitei235 – 2351NucleophilePROSITE-ProRule annotation
Sitei262 – 2621Activates thiol group during catalysisBy similarity
Binding sitei265 – 2651Glyceraldehyde 3-phosphateBy similarity
Binding sitei280 – 2801Glyceraldehyde 3-phosphateBy similarity
Binding sitei316 – 3161Glyceraldehyde 3-phosphateBy similarity
Binding sitei399 – 3991NADPBy similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi91 – 922NADPBy similarity

GO - Molecular functioni

GO - Biological processi

  • glucose metabolic process Source: InterPro
  • reductive pentose-phosphate cycle Source: TAIR
  • response to cadmium ion Source: TAIR
  • response to cold Source: TAIR
  • response to light stimulus Source: TAIR
  • response to sucrose Source: TAIR
Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Biological processi

Calvin cycle

Keywords - Ligandi

NADP

Enzyme and pathway databases

BRENDAi1.2.1.13. 399.
UniPathwayiUPA00116.

Names & Taxonomyi

Protein namesi
Recommended name:
Glyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic (EC:1.2.1.13)
Alternative name(s):
NADP-dependent glyceraldehydephosphate dehydrogenase B
Gene namesi
Name:GAPB
Ordered Locus Names:At1g42970
ORF Names:F13A11.3
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G42970.

Subcellular locationi

GO - Cellular componenti

  • apoplast Source: TAIR
  • chloroplast Source: TAIR
  • chloroplast envelope Source: TAIR
  • chloroplast membrane Source: UniProtKB-SubCell
  • chloroplast stroma Source: TAIR
  • chloroplast thylakoid membrane Source: TAIR
  • membrane Source: TAIR
  • stromule Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Membrane, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transit peptidei1 – 8080ChloroplastBy similarityAdd
BLAST
Chaini81 – 447367Glyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplasticPRO_0000010417Add
BLAST

Proteomic databases

PaxDbiP25857.
PRIDEiP25857.

2D gel databases

SWISS-2DPAGEP25857.

PTM databases

iPTMnetiP25857.

Expressioni

Tissue specificityi

Expressed in leaves and stems.1 Publication

Inductioni

Repressed by darkness and sucrose.1 Publication

Gene expression databases

GenevisibleiP25857. AT.

Interactioni

Subunit structurei

Tetramer of either four A chains (GAPDH 2) or two A and two B chains (GAPDH 1).By similarity

Protein-protein interaction databases

BioGridi26120. 6 interactions.
IntActiP25857. 2 interactions.
STRINGi3702.AT1G42970.1.

Structurei

3D structure databases

ProteinModelPortaliP25857.
SMRiP25857. Positions 81-422.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni234 – 2363Glyceraldehyde 3-phosphate bindingBy similarity
Regioni293 – 2942Glyceraldehyde 3-phosphate bindingBy similarity

Sequence similaritiesi

Keywords - Domaini

Transit peptide

Phylogenomic databases

eggNOGiKOG0657. Eukaryota.
COG0057. LUCA.
HOGENOMiHOG000071678.
InParanoidiP25857.
KOiK05298.
OMAiCSDVSTT.
OrthoDBiEOG09360CQC.
PhylomeDBiP25857.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR003823. DUF_CP12.
IPR020831. GlycerAld/Erythrose_P_DH.
IPR020830. GlycerAld_3-P_DH_AS.
IPR020829. GlycerAld_3-P_DH_cat.
IPR020828. GlycerAld_3-P_DH_NAD(P)-bd.
IPR006424. Glyceraldehyde-3-P_DH_1.
IPR016040. NAD(P)-bd_dom.
[Graphical view]
PfamiPF02672. CP12. 1 hit.
PF02800. Gp_dh_C. 1 hit.
PF00044. Gp_dh_N. 1 hit.
[Graphical view]
PRINTSiPR00078. G3PDHDRGNASE.
SMARTiSM00846. Gp_dh_N. 1 hit.
[Graphical view]
SUPFAMiSSF51735. SSF51735. 1 hit.
TIGRFAMsiTIGR01534. GAPDH-I. 1 hit.
PROSITEiPS00071. GAPDH. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P25857-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATHAALAVS RIPVTQRLQS KSAIHSFPAQ CSSKRLEVAE FSGLRMSSIG
60 70 80 90 100
GEASFFDAVA AQIIPKAVTT STPVRGETVA KLKVAINGFG RIGRNFLRCW
110 120 130 140 150
HGRKDSPLEV VVLNDSGGVK NASHLLKYDS MLGTFKAEVK IVDNETISVD
160 170 180 190 200
GKLIKVVSNR DPLKLPWAEL GIDIVIEGTG VFVDGPGAGK HIQAGASKVI
210 220 230 240 250
ITAPAKGADI PTYVMGVNEQ DYGHDVANII SNASCTTNCL APFAKVLDEE
260 270 280 290 300
FGIVKGTMTT THSYTGDQRL LDASHRDLRR ARAAALNIVP TSTGAAKAVS
310 320 330 340 350
LVLPQLKGKL NGIALRVPTP NVSVVDLVIN VEKKGLTAED VNEAFRKAAN
360 370 380 390 400
GPMKGILDVC DAPLVSVDFR CSDVSTTIDS SLTMVMGDDM VKVVAWYDNE
410 420 430 440
WGYSQRVVDL AHLVASKWPG AEAVGSGDPL EDFCKTNPAD EECKVYD
Length:447
Mass (Da):47,660
Last modified:May 2, 2002 - v2
Checksum:iE7DBD59915560EF3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M64115 mRNA. Translation: AAD10210.1.
M64118 Genomic DNA. Translation: AAA32795.1.
AC068324 Genomic DNA. Translation: AAG51517.1.
CP002684 Genomic DNA. Translation: AEE31933.1.
AY039961 mRNA. Translation: AAK64065.1.
AY039539 mRNA. Translation: AAK62594.1.
AY079402 mRNA. Translation: AAL85133.1.
AY095991 mRNA. Translation: AAM19948.1.
AY140091 mRNA. Translation: AAM98232.1.
BT002267 mRNA. Translation: AAN72278.1.
AK230314 mRNA. Translation: BAF02115.1.
PIRiC96497.
JQ1286.
RefSeqiNP_174996.1. NM_103456.3.
UniGeneiAt.21749.
At.67261.

Genome annotation databases

EnsemblPlantsiAT1G42970.1; AT1G42970.1; AT1G42970.
GeneIDi840895.
GrameneiAT1G42970.1; AT1G42970.1; AT1G42970.
KEGGiath:AT1G42970.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M64115 mRNA. Translation: AAD10210.1.
M64118 Genomic DNA. Translation: AAA32795.1.
AC068324 Genomic DNA. Translation: AAG51517.1.
CP002684 Genomic DNA. Translation: AEE31933.1.
AY039961 mRNA. Translation: AAK64065.1.
AY039539 mRNA. Translation: AAK62594.1.
AY079402 mRNA. Translation: AAL85133.1.
AY095991 mRNA. Translation: AAM19948.1.
AY140091 mRNA. Translation: AAM98232.1.
BT002267 mRNA. Translation: AAN72278.1.
AK230314 mRNA. Translation: BAF02115.1.
PIRiC96497.
JQ1286.
RefSeqiNP_174996.1. NM_103456.3.
UniGeneiAt.21749.
At.67261.

3D structure databases

ProteinModelPortaliP25857.
SMRiP25857. Positions 81-422.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi26120. 6 interactions.
IntActiP25857. 2 interactions.
STRINGi3702.AT1G42970.1.

PTM databases

iPTMnetiP25857.

2D gel databases

SWISS-2DPAGEP25857.

Proteomic databases

PaxDbiP25857.
PRIDEiP25857.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G42970.1; AT1G42970.1; AT1G42970.
GeneIDi840895.
GrameneiAT1G42970.1; AT1G42970.1; AT1G42970.
KEGGiath:AT1G42970.

Organism-specific databases

TAIRiAT1G42970.

Phylogenomic databases

eggNOGiKOG0657. Eukaryota.
COG0057. LUCA.
HOGENOMiHOG000071678.
InParanoidiP25857.
KOiK05298.
OMAiCSDVSTT.
OrthoDBiEOG09360CQC.
PhylomeDBiP25857.

Enzyme and pathway databases

UniPathwayiUPA00116.
BRENDAi1.2.1.13. 399.

Miscellaneous databases

PROiP25857.

Gene expression databases

GenevisibleiP25857. AT.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR003823. DUF_CP12.
IPR020831. GlycerAld/Erythrose_P_DH.
IPR020830. GlycerAld_3-P_DH_AS.
IPR020829. GlycerAld_3-P_DH_cat.
IPR020828. GlycerAld_3-P_DH_NAD(P)-bd.
IPR006424. Glyceraldehyde-3-P_DH_1.
IPR016040. NAD(P)-bd_dom.
[Graphical view]
PfamiPF02672. CP12. 1 hit.
PF02800. Gp_dh_C. 1 hit.
PF00044. Gp_dh_N. 1 hit.
[Graphical view]
PRINTSiPR00078. G3PDHDRGNASE.
SMARTiSM00846. Gp_dh_N. 1 hit.
[Graphical view]
SUPFAMiSSF51735. SSF51735. 1 hit.
TIGRFAMsiTIGR01534. GAPDH-I. 1 hit.
PROSITEiPS00071. GAPDH. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiG3PB_ARATH
AccessioniPrimary (citable) accession number: P25857
Secondary accession number(s): Q0WL92, Q9C7S2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 1, 1992
Last sequence update: May 2, 2002
Last modified: September 7, 2016
This is version 157 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Miscellaneous

Plants contain three types of GAPDH: NAD-dependent cytosolic forms which participate in glycolysis, NAD-dependent chloroplastic forms which participate in plastidic glycolysis and NADP-depedent chloroplastic forms which participate in the photosynthetic reductive pentose phosphate pathway (Calvin-Benson cycle). All the forms are encoded by distinct genes.

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.