ID G3PA1_ARATH Reviewed; 396 AA. AC P25856; Q41184; Q9LSE6; DT 01-MAY-1992, integrated into UniProtKB/Swiss-Prot. DT 02-MAY-2002, sequence version 3. DT 27-MAR-2024, entry version 198. DE RecName: Full=Glyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic; DE EC=1.2.1.13; DE AltName: Full=NADP-dependent glyceraldehydephosphate dehydrogenase A subunit 1; DE Flags: Precursor; GN Name=GAPA1; Synonyms=GAPA; OrderedLocusNames=At3g26650; GN ORFNames=MLJ15.4, MLJ15_5; OS Arabidopsis thaliana (Mouse-ear cress). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. OX NCBI_TaxID=3702; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA]. RX PubMed=1916285; DOI=10.1016/0378-1119(91)90242-4; RA Shih M.-C., Heinrich P., Goodman H.M.; RT "Cloning and chromosomal mapping of nuclear genes encoding chloroplast and RT cytosolic glyceraldehyde-3-phosphate-dehydrogenase from Arabidopsis RT thaliana."; RL Gene 104:133-138(1991). RN [2] RP ERRATUM OF PUBMED:1916285. RX PubMed=1398114; DOI=10.1016/0378-1119(92)90290-6; RA Shih M.-C., Heinrich P., Goodman H.M.; RL Gene 119:317-319(1992). RN [3] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA]. RC STRAIN=cv. Columbia; TISSUE=Shoot; RX PubMed=8932388; DOI=10.1093/nar/24.21.4313; RA Quigley F., Dao P., Cottet A., Mache R.; RT "Sequence analysis of an 81 kb contig from Arabidopsis thaliana chromosome RT III."; RL Nucleic Acids Res. 24:4313-4318(1996). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Columbia; RX PubMed=10819329; DOI=10.1093/dnares/7.2.131; RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.; RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC RT clones."; RL DNA Res. 7:131-135(2000). RN [5] RP GENOME REANNOTATION. RC STRAIN=cv. Columbia; RX PubMed=27862469; DOI=10.1111/tpj.13415; RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S., RA Town C.D.; RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference RT genome."; RL Plant J. 89:789-804(2017). RN [6] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Columbia; RX PubMed=14593172; DOI=10.1126/science.1088305; RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L., RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., RA Ecker J.R.; RT "Empirical analysis of transcriptional activity in the Arabidopsis RT genome."; RL Science 302:842-846(2003). RN [7] RP IDENTIFICATION BY MASS SPECTROMETRY, AND SUBCELLULAR LOCATION [LARGE SCALE RP ANALYSIS]. RC STRAIN=cv. Wassilewskija; RX PubMed=12766230; DOI=10.1074/mcp.m300030-mcp200; RA Ferro M., Salvi D., Brugiere S., Miras S., Kowalski S., Louwagie M., RA Garin J., Joyard J., Rolland N.; RT "Proteomics of the chloroplast envelope membranes from Arabidopsis RT thaliana."; RL Mol. Cell. Proteomics 2:325-345(2003). RN [8] RP TISSUE SPECIFICITY, AND INDUCTION. RX PubMed=15533878; DOI=10.1093/jxb/eri020; RA Marri L., Sparla F., Pupillo P., Trost P.; RT "Co-ordinated gene expression of photosynthetic glyceraldehyde-3-phosphate RT dehydrogenase, phosphoribulokinase, and CP12 in Arabidopsis thaliana."; RL J. Exp. Bot. 56:73-80(2005). RN [9] RP SUBCELLULAR LOCATION. RX PubMed=19675149; DOI=10.1104/pp.109.143701; RA Munoz-Bertomeu J., Cascales-Minana B., Mulet J.M., Baroja-Fernandez E., RA Pozueta-Romero J., Kuhn J.M., Segura J., Ros R.; RT "Plastidial glyceraldehyde-3-phosphate dehydrogenase deficiency leads to RT altered root development and affects the sugar and amino acid balance in RT Arabidopsis."; RL Plant Physiol. 151:541-558(2009). RN [10] RP X-RAY CRYSTALLOGRAPHY (2.60 ANGSTROMS) OF 60-396 IN COMPLEX WITH NAD, AND RP SUBUNIT. RX PubMed=20516587; DOI=10.1107/s1744309110013527; RA Fermani S., Sparla F., Marri L., Thumiger A., Pupillo P., Falini G., RA Trost P.; RT "Structure of photosynthetic glyceraldehyde-3-phosphate dehydrogenase RT (isoform A4) from Arabidopsis thaliana in complex with NAD."; RL Acta Crystallogr. F 66:621-626(2010). RN [11] RP X-RAY CRYSTALLOGRAPHY (2.00 ANGSTROMS) OF 60-396 IN COMPLEX WITH NAD, AND RP SUBUNIT. RX PubMed=22514274; DOI=10.1074/jbc.m112.350355; RA Fermani S., Trivelli X., Sparla F., Thumiger A., Calvaresi M., Marri L., RA Falini G., Zerbetto F., Trost P.; RT "Conformational selection and folding-upon-binding of intrinsically RT disordered protein CP12 regulate photosynthetic enzymes assembly."; RL J. Biol. Chem. 287:21372-21383(2012). CC -!- FUNCTION: Involved in the photosynthetic reductive pentose phosphate CC pathway (Calvin-Benson cycle). Catalyzes the reduction of 1,3- CC diphosphoglycerate by NADPH (By similarity). {ECO:0000250}. CC -!- CATALYTIC ACTIVITY: CC Reaction=D-glyceraldehyde 3-phosphate + NADP(+) + phosphate = (2R)-3- CC phospho-glyceroyl phosphate + H(+) + NADPH; Xref=Rhea:RHEA:10296, CC ChEBI:CHEBI:15378, ChEBI:CHEBI:43474, ChEBI:CHEBI:57604, CC ChEBI:CHEBI:57783, ChEBI:CHEBI:58349, ChEBI:CHEBI:59776; EC=1.2.1.13; CC -!- PATHWAY: Carbohydrate biosynthesis; Calvin cycle. CC -!- SUBUNIT: Tetramer of either four A chains (GAPDH 2) or two A and two B CC chains (GAPDH 1). {ECO:0000269|PubMed:20516587, CC ECO:0000269|PubMed:22514274}. CC -!- INTERACTION: CC P25856; Q9LZP9: CP12-2; NbExp=4; IntAct=EBI-1554434, EBI-449218; CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast membrane; Peripheral CC membrane protein. Plastid, chloroplast stroma. CC -!- TISSUE SPECIFICITY: Expressed in leaves and stems. CC {ECO:0000269|PubMed:15533878}. CC -!- INDUCTION: Repressed by darkness and sucrose. CC {ECO:0000269|PubMed:15533878}. CC -!- MISCELLANEOUS: Plants contain three types of GAPDH: NAD-dependent CC cytosolic forms which participate in glycolysis, NAD-dependent CC chloroplastic forms which participate in plastidic glycolysis and NADP- CC dependent chloroplastic forms which participate in the photosynthetic CC reductive pentose phosphate pathway (Calvin-Benson cycle). All the CC forms are encoded by distinct genes. CC -!- SIMILARITY: Belongs to the glyceraldehyde-3-phosphate dehydrogenase CC family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD10209.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305}; CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; M64114; AAD10209.1; ALT_INIT; mRNA. DR EMBL; M64117; AAA32793.1; -; Genomic_DNA. DR EMBL; S45910; AAB23532.1; -; Genomic_DNA. DR EMBL; X98130; CAA66816.1; -; Genomic_DNA. DR EMBL; AB026648; BAB01730.1; -; Genomic_DNA. DR EMBL; CP002686; AEE77191.1; -; Genomic_DNA. DR EMBL; AY058140; AAL25556.1; -; mRNA. DR EMBL; AY058107; AAL24215.1; -; mRNA. DR EMBL; AF428431; AAL16200.1; -; mRNA. DR EMBL; AY075637; AAL91645.1; -; mRNA. DR EMBL; AY142053; AAM98317.1; -; mRNA. DR PIR; JQ1285; JQ1285. DR RefSeq; NP_566796.2; NM_113576.4. DR PDB; 3K2B; X-ray; 2.60 A; A/B/C/D/E/F/G/H/O/Q=60-396. DR PDB; 3QV1; X-ray; 2.00 A; A/B/C/D/E/F=60-396. DR PDB; 3RVD; X-ray; 2.70 A; A/B/C/D/E/F/G/H/O/Q=61-396. DR PDB; 6KEZ; X-ray; 3.50 A; A/B/C/D/E/F/G/H=61-396. DR PDBsum; 3K2B; -. DR PDBsum; 3QV1; -. DR PDBsum; 3RVD; -. DR PDBsum; 6KEZ; -. DR AlphaFoldDB; P25856; -. DR SMR; P25856; -. DR BioGRID; 7607; 9. DR IntAct; P25856; 2. DR MINT; P25856; -. DR STRING; 3702.P25856; -. DR iPTMnet; P25856; -. DR PaxDb; 3702-AT3G26650-1; -. DR ProteomicsDB; 228893; -. DR EnsemblPlants; AT3G26650.1; AT3G26650.1; AT3G26650. DR GeneID; 822277; -. DR Gramene; AT3G26650.1; AT3G26650.1; AT3G26650. DR KEGG; ath:AT3G26650; -. DR Araport; AT3G26650; -. DR TAIR; AT3G26650; GAPA. DR eggNOG; KOG0657; Eukaryota. DR HOGENOM; CLU_030140_0_2_1; -. DR InParanoid; P25856; -. DR OrthoDB; 3165299at2759; -. DR PhylomeDB; P25856; -. DR BioCyc; ARA:AT3G26650-MONOMER; -. DR BioCyc; MetaCyc:AT3G26650-MONOMER; -. DR BRENDA; 1.2.1.13; 399. DR UniPathway; UPA00116; -. DR EvolutionaryTrace; P25856; -. DR PRO; PR:P25856; -. DR Proteomes; UP000006548; Chromosome 3. DR ExpressionAtlas; P25856; baseline and differential. DR GO; GO:0048046; C:apoplast; HDA:TAIR. DR GO; GO:0009507; C:chloroplast; HDA:TAIR. DR GO; GO:0009941; C:chloroplast envelope; HDA:TAIR. DR GO; GO:0031969; C:chloroplast membrane; IEA:UniProtKB-SubCell. DR GO; GO:0009570; C:chloroplast stroma; HDA:TAIR. DR GO; GO:0009535; C:chloroplast thylakoid membrane; HDA:TAIR. DR GO; GO:0005829; C:cytosol; HDA:TAIR. DR GO; GO:0010319; C:stromule; IDA:TAIR. DR GO; GO:0099080; C:supramolecular complex; IDA:CAFA. DR GO; GO:0097718; F:disordered domain specific binding; IPI:CAFA. DR GO; GO:0004365; F:glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity; IDA:CAFA. DR GO; GO:0047100; F:glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity; IEA:UniProtKB-EC. DR GO; GO:0042802; F:identical protein binding; IDA:CAFA. DR GO; GO:0003729; F:mRNA binding; IDA:TAIR. DR GO; GO:0051287; F:NAD binding; IDA:CAFA. DR GO; GO:0050661; F:NADP binding; IDA:CAFA. DR GO; GO:0042803; F:protein homodimerization activity; IDA:CAFA. DR GO; GO:1901149; F:salicylic acid binding; HDA:TAIR. DR GO; GO:0006006; P:glucose metabolic process; IEA:InterPro. DR GO; GO:0051289; P:protein homotetramerization; IDA:CAFA. DR GO; GO:0019253; P:reductive pentose-phosphate cycle; NAS:TAIR. DR GO; GO:0009409; P:response to cold; IEP:TAIR. DR GO; GO:0009416; P:response to light stimulus; IEP:TAIR. DR GO; GO:0009744; P:response to sucrose; IEP:TAIR. DR Gene3D; 3.40.50.720; NAD(P)-binding Rossmann-like Domain; 1. DR InterPro; IPR020831; GlycerAld/Erythrose_P_DH. DR InterPro; IPR020830; GlycerAld_3-P_DH_AS. DR InterPro; IPR020829; GlycerAld_3-P_DH_cat. DR InterPro; IPR020828; GlycerAld_3-P_DH_NAD(P)-bd. DR InterPro; IPR006424; Glyceraldehyde-3-P_DH_1. DR InterPro; IPR036291; NAD(P)-bd_dom_sf. DR NCBIfam; TIGR01534; GAPDH-I; 1. DR PANTHER; PTHR43148; GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2; 1. DR PANTHER; PTHR43148:SF13; GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPA1, CHLOROPLASTIC; 1. DR Pfam; PF02800; Gp_dh_C; 1. DR Pfam; PF00044; Gp_dh_N; 1. DR PIRSF; PIRSF000149; GAP_DH; 1. DR PRINTS; PR00078; G3PDHDRGNASE. DR SMART; SM00846; Gp_dh_N; 1. DR SUPFAM; SSF55347; Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain; 1. DR SUPFAM; SSF51735; NAD(P)-binding Rossmann-fold domains; 1. DR PROSITE; PS00071; GAPDH; 1. DR SWISS-2DPAGE; P25856; -. DR World-2DPAGE; 0003:P25856; -. DR Genevisible; P25856; AT. PE 1: Evidence at protein level; KW 3D-structure; Calvin cycle; Chloroplast; Membrane; NADP; Oxidoreductase; KW Plastid; Reference proteome; Transit peptide. FT TRANSIT 1..60 FT /note="Chloroplast" FT /evidence="ECO:0000250" FT CHAIN 61..396 FT /note="Glyceraldehyde-3-phosphate dehydrogenase GAPA1, FT chloroplastic" FT /id="PRO_0000010416" FT ACT_SITE 213 FT /note="Nucleophile" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU10009" FT BINDING 71..72 FT /ligand="NADP(+)" FT /ligand_id="ChEBI:CHEBI:58349" FT /evidence="ECO:0000269|PubMed:20516587, FT ECO:0000269|PubMed:22514274" FT BINDING 95 FT /ligand="NADP(+)" FT /ligand_id="ChEBI:CHEBI:58349" FT /evidence="ECO:0000269|PubMed:20516587, FT ECO:0000269|PubMed:22514274" FT BINDING 140 FT /ligand="NADP(+)" FT /ligand_id="ChEBI:CHEBI:58349" FT /evidence="ECO:0000269|PubMed:20516587, FT ECO:0000269|PubMed:22514274" FT BINDING 212..214 FT /ligand="D-glyceraldehyde 3-phosphate" FT /ligand_id="ChEBI:CHEBI:59776" FT /evidence="ECO:0000250" FT BINDING 243 FT /ligand="D-glyceraldehyde 3-phosphate" FT /ligand_id="ChEBI:CHEBI:59776" FT /evidence="ECO:0000250" FT BINDING 258 FT /ligand="D-glyceraldehyde 3-phosphate" FT /ligand_id="ChEBI:CHEBI:59776" FT /evidence="ECO:0000250" FT BINDING 271..272 FT /ligand="D-glyceraldehyde 3-phosphate" FT /ligand_id="ChEBI:CHEBI:59776" FT /evidence="ECO:0000250" FT BINDING 294 FT /ligand="D-glyceraldehyde 3-phosphate" FT /ligand_id="ChEBI:CHEBI:59776" FT /evidence="ECO:0000250" FT BINDING 376 FT /ligand="NADP(+)" FT /ligand_id="ChEBI:CHEBI:58349" FT /evidence="ECO:0000269|PubMed:20516587, FT ECO:0000269|PubMed:22514274" FT SITE 240 FT /note="Activates thiol group during catalysis" FT /evidence="ECO:0000250" FT CONFLICT 172 FT /note="I -> M (in Ref. 1; AAA32793/AAD10209 and 3; FT CAA66816)" FT /evidence="ECO:0000305" FT STRAND 62..68 FT /evidence="ECO:0007829|PDB:3QV1" FT HELIX 71..81 FT /evidence="ECO:0007829|PDB:3QV1" FT STRAND 87..94 FT /evidence="ECO:0007829|PDB:3QV1" FT HELIX 99..107 FT /evidence="ECO:0007829|PDB:3QV1" FT TURN 110..112 FT /evidence="ECO:0007829|PDB:3QV1" FT STRAND 119..129 FT /evidence="ECO:0007829|PDB:3QV1" FT STRAND 132..137 FT /evidence="ECO:0007829|PDB:3QV1" FT HELIX 142..144 FT /evidence="ECO:0007829|PDB:3QV1" FT HELIX 147..150 FT /evidence="ECO:0007829|PDB:3QV1" FT STRAND 154..157 FT /evidence="ECO:0007829|PDB:3QV1" FT STRAND 159..161 FT /evidence="ECO:0007829|PDB:3QV1" FT HELIX 165..173 FT /evidence="ECO:0007829|PDB:3QV1" FT STRAND 177..183 FT /evidence="ECO:0007829|PDB:3QV1" FT STRAND 186..188 FT /evidence="ECO:0007829|PDB:3QV1" FT TURN 194..196 FT /evidence="ECO:0007829|PDB:3QV1" FT HELIX 198..200 FT /evidence="ECO:0007829|PDB:3QV1" FT STRAND 206..209 FT /evidence="ECO:0007829|PDB:3QV1" FT HELIX 213..229 FT /evidence="ECO:0007829|PDB:3QV1" FT STRAND 231..241 FT /evidence="ECO:0007829|PDB:3QV1" FT STRAND 248..250 FT /evidence="ECO:0007829|PDB:3QV1" FT TURN 256..259 FT /evidence="ECO:0007829|PDB:3QV1" FT HELIX 262..264 FT /evidence="ECO:0007829|PDB:3QV1" FT STRAND 267..269 FT /evidence="ECO:0007829|PDB:3QV1" FT HELIX 273..280 FT /evidence="ECO:0007829|PDB:3QV1" FT HELIX 282..284 FT /evidence="ECO:0007829|PDB:3QV1" FT TURN 285..287 FT /evidence="ECO:0007829|PDB:3QV1" FT STRAND 288..296 FT /evidence="ECO:0007829|PDB:3QV1" FT STRAND 301..311 FT /evidence="ECO:0007829|PDB:3QV1" FT HELIX 315..327 FT /evidence="ECO:0007829|PDB:3QV1" FT TURN 328..333 FT /evidence="ECO:0007829|PDB:3QV1" FT STRAND 334..337 FT /evidence="ECO:0007829|PDB:3QV1" FT HELIX 343..346 FT /evidence="ECO:0007829|PDB:3QV1" FT STRAND 352..356 FT /evidence="ECO:0007829|PDB:3QV1" FT HELIX 357..359 FT /evidence="ECO:0007829|PDB:3QV1" FT STRAND 361..363 FT /evidence="ECO:0007829|PDB:3QV1" FT TURN 364..366 FT /evidence="ECO:0007829|PDB:3QV1" FT STRAND 367..374 FT /evidence="ECO:0007829|PDB:3QV1" FT HELIX 378..393 FT /evidence="ECO:0007829|PDB:3QV1" SQ SEQUENCE 396 AA; 42490 MW; FFD7FD662FB222FC CRC64; MASVTFSVPK GFTEFSGLRS SSASLPFGKK LSSDEFVSIV SFQTSAMGSS GGYRKGVTEA KLKVAINGFG RIGRNFLRCW HGRKDSPLDI IAINDTGGVK QASHLLKYDS TLGIFDADVK PSGETAISVD GKIIQVVSNR NPSLLPWKEL GIDIVIEGTG VFVDREGAGK HIEAGAKKVI ITAPGKGDIP TYVVGVNADA YSHDEPIISN ASCTTNCLAP FVKVLDQKFG IIKGTMTTTH SYTGDQRLLD ASHRDLRRAR AAALNIVPTS TGAAKAVALV LPNLKGKLNG IALRVPTPNV SVVDLVVQVS KKTFAEEVNA AFRDSAEKEL KGILDVCDEP LVSVDFRCSD FSTTIDSSLT MVMGDDMVKV IAWYDNEWGY SQRVVDLADI VANNWK //