Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Oryzain beta chain

Gene

Os04g0670200

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Probable thiol protease.By similarity

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei165 – 1651PROSITE-ProRule annotation
Active sitei302 – 3021PROSITE-ProRule annotation
Active sitei322 – 3221PROSITE-ProRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Hydrolase, Protease, Thiol protease

Protein family/group databases

MEROPSiC01.029.

Names & Taxonomyi

Protein namesi
Recommended name:
Oryzain beta chain (EC:3.4.22.-)
Gene namesi
Ordered Locus Names:Os04g0670200, LOC_Os04g57440
ORF Names:H0818H01.14, OSJNBa0043A12.28
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza
Proteomesi
  • UP000059680 Componenti: Chromosome 4

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2121Sequence analysisAdd
BLAST
Propeptidei22 – 140119Activation peptideCuratedPRO_0000026434Add
BLAST
Chaini141 – 361221Oryzain beta chainPRO_0000026435Add
BLAST
Propeptidei362 – 466105Removed in mature formCuratedPRO_0000046021Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi162 ↔ 205By similarity
Disulfide bondi196 ↔ 238By similarity
Disulfide bondi296 ↔ 347By similarity
Glycosylationi341 – 3411N-linked (GlcNAc...)PROSITE-ProRule annotation
Disulfide bondi386 ↔ 398Combined sources1 Publication
Glycosylationi389 – 3891N-linked (GlcNAc...)PROSITE-ProRule annotation
Disulfide bondi392 ↔ 413Combined sources1 Publication

Keywords - PTMi

Disulfide bond, Glycoprotein, Zymogen

Proteomic databases

PaxDbiP25777.
PRIDEiP25777.

Expressioni

Tissue specificityi

Expressed only in seeds.1 Publication

Inductioni

By gibberellic acid (GA).1 Publication

Gene expression databases

ExpressionAtlasiP25777. baseline and differential.
GenevisibleiP25777. OS.

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os04g57440.1.

Structurei

Secondary structure

1
466
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi386 – 3894Combined sources
Beta strandi394 – 3985Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1FWONMR-A383-417[»]
ProteinModelPortaliP25777.
SMRiP25777. Positions 141-364, 383-417.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP25777.

Family & Domainsi

Sequence similaritiesi

Belongs to the peptidase C1 family.PROSITE-ProRule annotation

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiKOG1543. Eukaryota.
KOG4296. Eukaryota.
COG4870. LUCA.
HOGENOMiHOG000230773.
InParanoidiP25777.
OrthoDBiEOG093609HI.

Family and domain databases

InterProiIPR000118. Granulin.
IPR025661. Pept_asp_AS.
IPR000169. Pept_cys_AS.
IPR025660. Pept_his_AS.
IPR013128. Peptidase_C1A.
IPR000668. Peptidase_C1A_C.
IPR013201. Prot_inhib_I29.
[Graphical view]
PANTHERiPTHR12411. PTHR12411. 1 hit.
PfamiPF00396. Granulin. 1 hit.
PF08246. Inhibitor_I29. 1 hit.
PF00112. Peptidase_C1. 1 hit.
[Graphical view]
PRINTSiPR00705. PAPAIN.
SMARTiSM00277. GRAN. 1 hit.
SM00848. Inhibitor_I29. 1 hit.
SM00645. Pept_C1. 1 hit.
[Graphical view]
PROSITEiPS00640. THIOL_PROTEASE_ASN. 1 hit.
PS00139. THIOL_PROTEASE_CYS. 1 hit.
PS00639. THIOL_PROTEASE_HIS. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P25777-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAARAAAAAF LLLLIVGAAT AAPDMSIISY NAEHGARGLE EGPTEAEARA
60 70 80 90 100
AYDLWLAENG GGSPNALGGE HERRFLVFWD NLKFVDAHNA RADERGGFRL
110 120 130 140 150
GMNRFADLTN EEFRATFLGA KVAERSRAAG ERYRHDGVEE LPESVDWREK
160 170 180 190 200
GAVAPVKNQG QCGSCWAFSA VSTVESINQL VTGEMITLSE QELVECSTNG
210 220 230 240 250
QNSGCNGGLM DDAFDFIIKN GGIDTEDDYP YKAVDGKCDI NRENAKVVSI
260 270 280 290 300
DGFEDVPQND EKSLQKAVAH QPVSVAIEAG GREFQLYHSG VFSGRCGTSL
310 320 330 340 350
DHGVVAVGYG TDNGKDYWIV RNSWGPKWGE SGYVRMERNI NVTTGKCGIA
360 370 380 390 400
MMASYPTKSG ANPPKPSPTP PTPPTPPPPS APDHVCDDNF SCPAGSTCCC
410 420 430 440 450
AFGFRNLCLV WGCCPVEGAT CCKDHASCCP PDYPVCNTRA GTCSASKNSP
460
LSVKALKRTL AKLNTA
Length:466
Mass (Da):49,799
Last modified:May 30, 2006 - v2
Checksum:i830531BD39144598
GO

Sequence cautioni

The sequence BAA14403 differs from that shown. Reason: Frameshift at positions 17, 21 and 466. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti95 – 951R → G in BAA14403 (PubMed:1885617).Curated
Sequence conflicti211 – 2111D → A in BAA14403 (PubMed:1885617).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D90407 mRNA. Translation: BAA14403.1. Frameshift.
AL606619 Genomic DNA. Translation: CAE02823.1.
AL732346 Genomic DNA. Translation: CAJ86092.1.
AP008210 Genomic DNA. Translation: BAF16125.2.
AP014960 Genomic DNA. Translation: BAS91553.1.
AK109371 mRNA. Translation: BAG98700.1.
AF366556 mRNA. Translation: AAM00365.1.
PIRiJU0389. KHRZOB.
RefSeqiXP_015636103.1. XM_015780617.1.
UniGeneiOs.8032.

Genome annotation databases

EnsemblPlantsiOS04T0670200-01; OS04T0670200-01; OS04G0670200.
GeneIDi4337351.
GrameneiOS04T0670200-01; OS04T0670200-01; OS04G0670200.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D90407 mRNA. Translation: BAA14403.1. Frameshift.
AL606619 Genomic DNA. Translation: CAE02823.1.
AL732346 Genomic DNA. Translation: CAJ86092.1.
AP008210 Genomic DNA. Translation: BAF16125.2.
AP014960 Genomic DNA. Translation: BAS91553.1.
AK109371 mRNA. Translation: BAG98700.1.
AF366556 mRNA. Translation: AAM00365.1.
PIRiJU0389. KHRZOB.
RefSeqiXP_015636103.1. XM_015780617.1.
UniGeneiOs.8032.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1FWONMR-A383-417[»]
ProteinModelPortaliP25777.
SMRiP25777. Positions 141-364, 383-417.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os04g57440.1.

Protein family/group databases

MEROPSiC01.029.

Proteomic databases

PaxDbiP25777.
PRIDEiP25777.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOS04T0670200-01; OS04T0670200-01; OS04G0670200.
GeneIDi4337351.
GrameneiOS04T0670200-01; OS04T0670200-01; OS04G0670200.

Phylogenomic databases

eggNOGiKOG1543. Eukaryota.
KOG4296. Eukaryota.
COG4870. LUCA.
HOGENOMiHOG000230773.
InParanoidiP25777.
OrthoDBiEOG093609HI.

Miscellaneous databases

EvolutionaryTraceiP25777.

Gene expression databases

ExpressionAtlasiP25777. baseline and differential.
GenevisibleiP25777. OS.

Family and domain databases

InterProiIPR000118. Granulin.
IPR025661. Pept_asp_AS.
IPR000169. Pept_cys_AS.
IPR025660. Pept_his_AS.
IPR013128. Peptidase_C1A.
IPR000668. Peptidase_C1A_C.
IPR013201. Prot_inhib_I29.
[Graphical view]
PANTHERiPTHR12411. PTHR12411. 1 hit.
PfamiPF00396. Granulin. 1 hit.
PF08246. Inhibitor_I29. 1 hit.
PF00112. Peptidase_C1. 1 hit.
[Graphical view]
PRINTSiPR00705. PAPAIN.
SMARTiSM00277. GRAN. 1 hit.
SM00848. Inhibitor_I29. 1 hit.
SM00645. Pept_C1. 1 hit.
[Graphical view]
PROSITEiPS00640. THIOL_PROTEASE_ASN. 1 hit.
PS00139. THIOL_PROTEASE_CYS. 1 hit.
PS00639. THIOL_PROTEASE_HIS. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiORYB_ORYSJ
AccessioniPrimary (citable) accession number: P25777
Secondary accession number(s): B7F253
, Q0J962, Q259Q5, Q7XR57, Q8S4X9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 1, 1992
Last sequence update: May 30, 2006
Last modified: September 7, 2016
This is version 115 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Peptidase families
    Classification of peptidase families and list of entries
  3. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  4. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.