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P25697

- KPPR_ARATH

UniProt

P25697 - KPPR_ARATH

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Protein

Phosphoribulokinase, chloroplastic

Gene
At1g32060, T12O21.4
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 5 out of 5 - Experimental evidence at protein leveli

Functioni

Catalytic activityi

ATP + D-ribulose 5-phosphate = ADP + D-ribulose 1,5-bisphosphate.

Enzyme regulationi

Light regulated via thioredoxin by reversible oxidation/reduction of sulfhydryl/disulfide groups.

Pathwayi

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. phosphoribulokinase activity Source: UniProtKB-EC
  3. protein binding Source: TAIR

GO - Biological processi

  1. defense response to bacterium Source: TAIR
  2. reductive pentose-phosphate cycle Source: UniProtKB-UniPathway
  3. response to cold Source: TAIR
Complete GO annotation...

Keywords - Molecular functioni

Kinase, Transferase

Keywords - Biological processi

Calvin cycle, Photosynthesis

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciARA:AT1G32060-MONOMER.
MetaCyc:AT1G32060-MONOMER.
UniPathwayiUPA00116.

Names & Taxonomyi

Protein namesi
Recommended name:
Phosphoribulokinase, chloroplastic (EC:2.7.1.19)
Short name:
PRK
Short name:
PRKase
Alternative name(s):
Phosphopentokinase
Gene namesi
Ordered Locus Names:At1g32060
ORF Names:T12O21.4
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548: Chromosome 1

Organism-specific databases

TAIRiAT1G32060.

Subcellular locationi

GO - Cellular componenti

  1. apoplast Source: TAIR
  2. chloroplast Source: TAIR
  3. chloroplast envelope Source: TAIR
  4. chloroplast stroma Source: TAIR
  5. chloroplast thylakoid membrane Source: TAIR
  6. membrane Source: TAIR
  7. stromule Source: TAIR
  8. thylakoid Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transit peptidei1 – 4646ChloroplastAdd
BLAST
Chaini47 – 395349Phosphoribulokinase, chloroplasticPRO_0000025751Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi61 ↔ 100 By similarity

Keywords - PTMi

Disulfide bond

Proteomic databases

PaxDbiP25697.
PRIDEiP25697.

2D gel databases

SWISS-2DPAGEP25697.
World-2DPAGE0003:P25697.

Expressioni

Gene expression databases

GenevestigatoriP25697.

Interactioni

Protein-protein interaction databases

BioGridi25332. 3 interactions.
IntActiP25697. 2 interactions.
STRINGi3702.AT1G32060.1-P.

Structurei

3D structure databases

ProteinModelPortaliP25697.
SMRiP25697. Positions 47-242.

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transit peptide

Phylogenomic databases

eggNOGiCOG0572.
HOGENOMiHOG000230117.
InParanoidiP25697.
KOiK00855.
OMAiMKPIYNH.
PhylomeDBiP25697.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR027417. P-loop_NTPase.
IPR006082. PRK.
IPR006083. PRK/URK.
[Graphical view]
PfamiPF00485. PRK. 1 hit.
[Graphical view]
PRINTSiPR00478. PHRIBLKINASE.
SUPFAMiSSF52540. SSF52540. 1 hit.
PROSITEiPS00567. PHOSPHORIBULOKINASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P25697-1 [UniParc]FASTAAdd to Basket

« Hide

MAVSTIYSTQ ALNSTHFLTS SSSSKQVFLY RRQPQTNRRF NTLITCAQET    50
IVIGLAADSG CGKSTFMRRL TSVFGGAAKP PKGGNPDSNT LISDTTTVIC 100
LDDYHSLDRY GRKEQKVTAL DPRANDFDLM YEQVKALKNG IAVEKPIYNH 150
VTGLLDPPEL IQPPKILVIE GLHPMFDERV RDLLDFSIYL DISNEVKFAW 200
KIQRDMAERG HSLESIKASI EARKPDFDAF IDPQKQYADA VIEVLPTTLI 250
PDDNEGKVLR VRLIMKEGVK YFSPVYLFDE GSTISWIPCG RKLTCSYPGI 300
KFNYEPDSYF DHEVSVLEMD GQFDRLDELI YVESHLSNLS TKFYGEVTQQ 350
MLKHADFPGS NNGTGLFQTI VGLKIRDLYE QLIANKATAR AEAKA 395
Length:395
Mass (Da):44,464
Last modified:May 1, 1992 - v1
Checksum:i4660A92EF7E39BC6
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X58149 mRNA. Translation: CAA41155.1.
AC074309 Genomic DNA. Translation: AAG50797.1.
CP002684 Genomic DNA. Translation: AEE31430.1.
AY044335 mRNA. Translation: AAK73276.1.
AY128355 mRNA. Translation: AAM91558.1.
BT000019 mRNA. Translation: AAN15338.1.
AY084576 mRNA. Translation: AAM61142.1.
PIRiS16583.
RefSeqiNP_174486.1. NM_102940.5.
UniGeneiAt.22659.

Genome annotation databases

EnsemblPlantsiAT1G32060.1; AT1G32060.1; AT1G32060.
GeneIDi840098.
KEGGiath:AT1G32060.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X58149 mRNA. Translation: CAA41155.1 .
AC074309 Genomic DNA. Translation: AAG50797.1 .
CP002684 Genomic DNA. Translation: AEE31430.1 .
AY044335 mRNA. Translation: AAK73276.1 .
AY128355 mRNA. Translation: AAM91558.1 .
BT000019 mRNA. Translation: AAN15338.1 .
AY084576 mRNA. Translation: AAM61142.1 .
PIRi S16583.
RefSeqi NP_174486.1. NM_102940.5.
UniGenei At.22659.

3D structure databases

ProteinModelPortali P25697.
SMRi P25697. Positions 47-242.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 25332. 3 interactions.
IntActi P25697. 2 interactions.
STRINGi 3702.AT1G32060.1-P.

2D gel databases

SWISS-2DPAGE P25697.
World-2DPAGE 0003:P25697.

Proteomic databases

PaxDbi P25697.
PRIDEi P25697.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi AT1G32060.1 ; AT1G32060.1 ; AT1G32060 .
GeneIDi 840098.
KEGGi ath:AT1G32060.

Organism-specific databases

TAIRi AT1G32060.

Phylogenomic databases

eggNOGi COG0572.
HOGENOMi HOG000230117.
InParanoidi P25697.
KOi K00855.
OMAi MKPIYNH.
PhylomeDBi P25697.

Enzyme and pathway databases

UniPathwayi UPA00116 .
BioCyci ARA:AT1G32060-MONOMER.
MetaCyc:AT1G32060-MONOMER.

Gene expression databases

Genevestigatori P25697.

Family and domain databases

Gene3Di 3.40.50.300. 1 hit.
InterProi IPR027417. P-loop_NTPase.
IPR006082. PRK.
IPR006083. PRK/URK.
[Graphical view ]
Pfami PF00485. PRK. 1 hit.
[Graphical view ]
PRINTSi PR00478. PHRIBLKINASE.
SUPFAMi SSF52540. SSF52540. 1 hit.
PROSITEi PS00567. PHOSPHORIBULOKINASE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Nucleotide sequence of a cDNA clone encoding chloroplast phosphoribulokinase from Arabidopsis thaliana."
    Horsnell P.R., Raines C.A.
    Plant Mol. Biol. 17:183-184(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: cv. C24.
  2. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
    Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
    , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
    Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  3. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  4. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  5. "Full-length cDNA from Arabidopsis thaliana."
    Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.
    Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].

Entry informationi

Entry nameiKPPR_ARATH
AccessioniPrimary (citable) accession number: P25697
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 1, 1992
Last sequence update: May 1, 1992
Last modified: September 3, 2014
This is version 111 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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