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Protein

Protein HtrL

Gene

htrL

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

Involved in lipopolysaccharide biosynthesis.

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Lipopolysaccharide biosynthesis

Enzyme and pathway databases

BioCyciEcoCyc:EG11188-MONOMER.
ECOL316407:JW5644-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein HtrL
Gene namesi
Name:htrL
Synonyms:yibB
Ordered Locus Names:b3618, JW5644
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11188. htrL.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 285285Protein HtrLPRO_0000084087Add
BLAST

Proteomic databases

PaxDbiP25666.

Interactioni

Protein-protein interaction databases

BioGridi4263300. 313 interactions.
STRINGi511145.b3618.

Structurei

3D structure databases

ProteinModelPortaliP25666.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4108SEH. Bacteria.
ENOG4111H5F. LUCA.
HOGENOMiHOG000054844.
InParanoidiP25666.
OMAiFFDIGRG.
OrthoDBiEOG6PKF9M.
PhylomeDBiP25666.

Family and domain databases

InterProiIPR011735. HtrL.
[Graphical view]
PfamiPF09612. HtrL_YibB. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02192. HtrL_YibB. 1 hit.

Sequencei

Sequence statusi: Complete.

P25666-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKSSTTIITA YFDIGRGDWT ANKGFREKLA RSVDVYFSYF ERLAALENEM
60 70 80 90 100
IIFTSPDLKP RVEAIRNGKP TTVIVIDIKK KFRYIRSRIE KIQKDESFTN
110 120 130 140 150
RLEPRQLKNP EYWSPEYVLV CNLKAYFVNK AINMGLVKTP LVAWIDFGYC
160 170 180 190 200
HKPNVTRGLK IWDFPFDESK MHLFTIKKGL TVTSQQQVFD FMIGNHVYII
210 220 230 240 250
GGAIVGSQHK WKEFYKLVLE SQKITLNNNI VDDDQGIFVM CYYKRPDLFN
260 270 280
LNYLGRGKWF DLFRCFRSNT LGAKMQALRI FLSRK
Length:285
Mass (Da):33,458
Last modified:December 4, 2007 - v2
Checksum:i5EF61BE2D95A601D
GO

Sequence cautioni

The sequence AAA91059.1 differs from that shown. Reason: Erroneous initiation. Curated
The sequence AAB18595.1 differs from that shown. Reason: Erroneous initiation. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M94888 Genomic DNA. Translation: AAA91059.1. Different initiation.
U00039 Genomic DNA. Translation: AAB18595.1. Different initiation.
U00096 Genomic DNA. Translation: AAC76642.2.
AP009048 Genomic DNA. Translation: BAE77674.1.
M33577 Genomic DNA. No translation available.
X06690 Genomic DNA. No translation available.
PIRiS47839.
RefSeqiNP_418075.2. NC_000913.3.
WP_000842820.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76642; AAC76642; b3618.
BAE77674; BAE77674; BAE77674.
GeneIDi948137.
KEGGiecj:JW5644.
eco:b3618.
PATRICi32122723. VBIEscCol129921_3738.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M94888 Genomic DNA. Translation: AAA91059.1. Different initiation.
U00039 Genomic DNA. Translation: AAB18595.1. Different initiation.
U00096 Genomic DNA. Translation: AAC76642.2.
AP009048 Genomic DNA. Translation: BAE77674.1.
M33577 Genomic DNA. No translation available.
X06690 Genomic DNA. No translation available.
PIRiS47839.
RefSeqiNP_418075.2. NC_000913.3.
WP_000842820.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP25666.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4263300. 313 interactions.
STRINGi511145.b3618.

Proteomic databases

PaxDbiP25666.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76642; AAC76642; b3618.
BAE77674; BAE77674; BAE77674.
GeneIDi948137.
KEGGiecj:JW5644.
eco:b3618.
PATRICi32122723. VBIEscCol129921_3738.

Organism-specific databases

EchoBASEiEB1174.
EcoGeneiEG11188. htrL.

Phylogenomic databases

eggNOGiENOG4108SEH. Bacteria.
ENOG4111H5F. LUCA.
HOGENOMiHOG000054844.
InParanoidiP25666.
OMAiFFDIGRG.
OrthoDBiEOG6PKF9M.
PhylomeDBiP25666.

Enzyme and pathway databases

BioCyciEcoCyc:EG11188-MONOMER.
ECOL316407:JW5644-MONOMER.

Miscellaneous databases

PROiP25666.

Family and domain databases

InterProiIPR011735. HtrL.
[Graphical view]
PfamiPF09612. HtrL_YibB. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02192. HtrL_YibB. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The Escherichia coli htrL gene, cloning, sequencing, and transcriptional regulation: evidence for its positive regulation by the rfaH gene product."
    Raina S., Missiakas D., Georgopoulos C.
    Submitted (MAR-1996) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: K12.
  2. "Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes."
    Sofia H.J., Burland V., Daniels D.L., Plunkett G. III, Blattner F.R.
    Nucleic Acids Res. 22:2576-2586(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  5. "Cloning, expression, and characterization of the Escherichia coli K-12 rfaD gene."
    Pegues J.C., Chen L., Gordon A.W., Ding L., Coleman W.G. Jr.
    J. Bacteriol. 172:4652-4660(1990) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-214.
    Strain: K12.
  6. "Nucleotide sequence of the 2-amino-3-ketobutyrate coenzyme A ligase (kbl) gene of E. coli."
    Aronson B.D., Ravnikar P.D., Somerville R.L.
    Nucleic Acids Res. 16:3586-3586(1988) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 213-285.
    Strain: K12.

Entry informationi

Entry nameiHTRL_ECOLI
AccessioniPrimary (citable) accession number: P25666
Secondary accession number(s): Q2M7T2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 1, 1992
Last sequence update: December 4, 2007
Last modified: January 20, 2016
This is version 99 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.