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Protein

Putative transposon Ty5-1 protein YCL075W

Gene

TY5B

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein uncertaini

Functioni

GO - Molecular functioni

  1. DNA-directed DNA polymerase activity Source: SGD
  2. peptidase activity Source: SGD
  3. ribonuclease activity Source: SGD
  4. RNA binding Source: SGD
  5. RNA-directed DNA polymerase activity Source: SGD

GO - Biological processi

  1. DNA biosynthetic process Source: GOC
  2. proteolysis Source: GOC
  3. RNA-dependent DNA replication Source: GOC
  4. RNA phosphodiester bond hydrolysis Source: GOC
  5. transposition, RNA-mediated Source: SGD
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Putative transposon Ty5-1 protein YCL075W
Gene namesi
Name:TY5B
Ordered Locus Names:YCL075W
ORF Names:YCL75W
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
ProteomesiUP000002311: Chromosome III

Organism-specific databases

SGDiS000000580. YCL075W.

Subcellular locationi

GO - Cellular componenti

  1. retrotransposon nucleocapsid Source: SGD
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 146146Putative transposon Ty5-1 protein YCL075WPRO_0000203504Add
BLAST

Expressioni

Gene expression databases

GenevestigatoriP25601.

Interactioni

Protein-protein interaction databases

IntActiP25601. 1 interaction.

Structurei

3D structure databases

ProteinModelPortaliP25601.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

InParanoidiP25601.
OrthoDBiEOG7PK9BD.

Sequencei

Sequence statusi: Complete.

P25601-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MYIIYGADHR ISNCSLLKRR IPEARIFKLY PNDKTSRSSS ASVAIPDYET
60 70 80 90 100
QGQTAGQITP KSWLCMLSST VPATKSSEWI FDTGCTSHMC HDRSIFSSFT
110 120 130 140
RSSRKDFVRG VGGSIPIMGS GTVNIGTVQL HDVSYVPDLP VNLISV
Length:146
Mass (Da):16,049
Last modified:May 1, 1992 - v1
Checksum:i9CB076BA872E2756
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X59720 Genomic DNA. No translation available.
AY558370 Genomic DNA. Translation: AAS56696.1.
BK006937 Genomic DNA. No translation available.
PIRiS19407.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X59720 Genomic DNA. No translation available.
AY558370 Genomic DNA. Translation: AAS56696.1.
BK006937 Genomic DNA. No translation available.
PIRiS19407.

3D structure databases

ProteinModelPortaliP25601.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiP25601. 1 interaction.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

SGDiS000000580. YCL075W.

Phylogenomic databases

InParanoidiP25601.
OrthoDBiEOG7PK9BD.

Gene expression databases

GenevestigatoriP25601.

Family and domain databases

ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The complete DNA sequence of yeast chromosome III."
    Oliver S.G., van der Aart Q.J.M., Agostoni-Carbone M.L., Aigle M., Alberghina L., Alexandraki D., Antoine G., Anwar R., Ballesta J.P.G., Benit P., Berben G., Bergantino E., Biteau N., Bolle P.-A., Bolotin-Fukuhara M., Brown A., Brown A.J.P., Buhler J.-M.
    , Carcano C., Carignani G., Cederberg H., Chanet R., Contreras R., Crouzet M., Daignan-Fornier B., Defoor E., Delgado M.D., Demolder J., Doira C., Dubois E., Dujon B., Duesterhoeft A., Erdmann D., Esteban M., Fabre F., Fairhead C., Faye G., Feldmann H., Fiers W., Francingues-Gaillard M.-C., Franco L., Frontali L., Fukuhara H., Fuller L.J., Galland P., Gent M.E., Gigot D., Gilliquet V., Glansdorff N., Goffeau A., Grenson M., Grisanti P., Grivell L.A., de Haan M., Haasemann M., Hatat D., Hoenicka J., Hegemann J.H., Herbert C.J., Hilger F., Hohmann S., Hollenberg C.P., Huse K., Iborra F., Indge K.J., Isono K., Jacq C., Jacquet M., James C.M., Jauniaux J.-C., Jia Y., Jimenez A., Kelly A., Kleinhans U., Kreisl P., Lanfranchi G., Lewis C., van der Linden C.G., Lucchini G., Lutzenkirchen K., Maat M.J., Mallet L., Mannhaupt G., Martegani E., Mathieu A., Maurer C.T.C., McConnell D., McKee R.A., Messenguy F., Mewes H.-W., Molemans F., Montague M.A., Muzi Falconi M., Navas L., Newlon C.S., Noone D., Pallier C., Panzeri L., Pearson B.M., Perea J., Philippsen P., Pierard A., Planta R.J., Plevani P., Poetsch B., Pohl F.M., Purnelle B., Ramezani Rad M., Rasmussen S.W., Raynal A., Remacha M.A., Richterich P., Roberts A.B., Rodriguez F., Sanz E., Schaaff-Gerstenschlaeger I., Scherens B., Schweitzer B., Shu Y., Skala J., Slonimski P.P., Sor F., Soustelle C., Spiegelberg R., Stateva L.I., Steensma H.Y., Steiner S., Thierry A., Thireos G., Tzermia M., Urrestarazu L.A., Valle G., Vetter I., van Vliet-Reedijk J.C., Voet M., Volckaert G., Vreken P., Wang H., Warmington J.R., von Wettstein D., Wicksteed B.L., Wilson C., Wurst H., Xu G., Yoshikawa A., Zimmermann F.K., Sgouros J.G.
    Nature 357:38-46(1992) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  2. Cited for: GENOME REANNOTATION.
    Strain: ATCC 204508 / S288c.
  3. Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  4. Cited for: IDENTIFICATION AS PART OF TRANSPOSON TY5-1.

Entry informationi

Entry nameiYCH5_YEAST
AccessioniPrimary (citable) accession number: P25601
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 1, 1992
Last sequence update: May 1, 1992
Last modified: January 7, 2015
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Caution

Could be the product of a pseudogene. This is a truncated part of a POL protein in the mutated, non-functional YCLWTy5-1 transposon.Curated

Keywords - Technical termi

Complete proteome, Reference proteome, Transposable element

Documents

  1. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  2. Yeast chromosome III
    Yeast (Saccharomyces cerevisiae) chromosome III: entries and gene names

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.