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P25600

- YCH4_YEAST

UniProt

P25600 - YCH4_YEAST

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Protein

Putative transposon Ty5-1 protein YCL074W

Gene
TY5A, YCL074W, YCL74W
Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 2 out of 5 - Protein uncertaini

Functioni

GO - Molecular functioni

  1. DNA-directed DNA polymerase activity Source: SGD
  2. peptidase activity Source: SGD
  3. ribonuclease activity Source: SGD
  4. RNA binding Source: SGD
  5. RNA-directed DNA polymerase activity Source: SGD

GO - Biological processi

  1. DNA-dependent DNA replication Source: GOC
  2. proteolysis Source: GOC
  3. RNA-dependent DNA replication Source: GOC
  4. RNA phosphodiester bond hydrolysis Source: GOC
  5. transposition, RNA-mediated Source: SGD
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Putative transposon Ty5-1 protein YCL074W
Gene namesi
Name:TY5A
Ordered Locus Names:YCL074W
ORF Names:YCL74W
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
ProteomesiUP000002311: Chromosome III

Organism-specific databases

SGDiS000000579. YCL074W.

Subcellular locationi

GO - Cellular componenti

  1. retrotransposon nucleocapsid Source: SGD
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 308308Putative transposon Ty5-1 protein YCL074WPRO_0000203503Add
BLAST

Expressioni

Gene expression databases

GenevestigatoriP25600.

Interactioni

Protein-protein interaction databases

DIPiDIP-7287N.
MINTiMINT-552220.

Structurei

3D structure databases

ProteinModelPortaliP25600.

Family & Domainsi

Phylogenomic databases

OrthoDBiEOG7KH9VP.

Family and domain databases

InterProiIPR013103. RVT_2.
[Graphical view]
PfamiPF07727. RVT_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P25600-1 [UniParc]FASTAAdd to Basket

« Hide

MDVDTAFLNS TMDEPIYVKQ PPGFVNERNP DYVWELYGGM YGLKQAPLLW    50
NEHINNTLKK IGFCRHEGEH GLYFRSTSDG PIYIAVYVDD LLVAAPSPKI 100
YDRVKQELTK LYSMKDLGKV DKFLGLNIHQ SSNGDITLSL QDYIAKAASE 150
SEINTFKLTQ TPLCNSKPLF ETTSPHLKDI TPYQSIVGQL LFCANTGRPD 200
ISYPVSLLSR FLREPRAIHL ESARRVLRYL YTTRSMCLKY RSGSQLALTV 250
YCDASHGAIH DLPHSTGGYV TLLAGAPVTW SSKKLKGVIP VPSTEAEYIT 300
ASETVMEI 308
Length:308
Mass (Da):34,507
Last modified:July 19, 2005 - v2
Checksum:i63CB03A9AB42E733
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X59720 Genomic DNA. No translation available.
BK006937 Genomic DNA. No translation available.
PIRiS19406.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X59720 Genomic DNA. No translation available.
BK006937 Genomic DNA. No translation available.
PIRi S19406.

3D structure databases

ProteinModelPortali P25600.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

DIPi DIP-7287N.
MINTi MINT-552220.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Organism-specific databases

SGDi S000000579. YCL074W.

Phylogenomic databases

OrthoDBi EOG7KH9VP.

Gene expression databases

Genevestigatori P25600.

Family and domain databases

InterProi IPR013103. RVT_2.
[Graphical view ]
Pfami PF07727. RVT_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The complete DNA sequence of yeast chromosome III."
    Oliver S.G., van der Aart Q.J.M., Agostoni-Carbone M.L., Aigle M., Alberghina L., Alexandraki D., Antoine G., Anwar R., Ballesta J.P.G., Benit P., Berben G., Bergantino E., Biteau N., Bolle P.-A., Bolotin-Fukuhara M., Brown A., Brown A.J.P., Buhler J.-M.
    , Carcano C., Carignani G., Cederberg H., Chanet R., Contreras R., Crouzet M., Daignan-Fornier B., Defoor E., Delgado M.D., Demolder J., Doira C., Dubois E., Dujon B., Duesterhoeft A., Erdmann D., Esteban M., Fabre F., Fairhead C., Faye G., Feldmann H., Fiers W., Francingues-Gaillard M.-C., Franco L., Frontali L., Fukuhara H., Fuller L.J., Galland P., Gent M.E., Gigot D., Gilliquet V., Glansdorff N., Goffeau A., Grenson M., Grisanti P., Grivell L.A., de Haan M., Haasemann M., Hatat D., Hoenicka J., Hegemann J.H., Herbert C.J., Hilger F., Hohmann S., Hollenberg C.P., Huse K., Iborra F., Indge K.J., Isono K., Jacq C., Jacquet M., James C.M., Jauniaux J.-C., Jia Y., Jimenez A., Kelly A., Kleinhans U., Kreisl P., Lanfranchi G., Lewis C., van der Linden C.G., Lucchini G., Lutzenkirchen K., Maat M.J., Mallet L., Mannhaupt G., Martegani E., Mathieu A., Maurer C.T.C., McConnell D., McKee R.A., Messenguy F., Mewes H.-W., Molemans F., Montague M.A., Muzi Falconi M., Navas L., Newlon C.S., Noone D., Pallier C., Panzeri L., Pearson B.M., Perea J., Philippsen P., Pierard A., Planta R.J., Plevani P., Poetsch B., Pohl F.M., Purnelle B., Ramezani Rad M., Rasmussen S.W., Raynal A., Remacha M.A., Richterich P., Roberts A.B., Rodriguez F., Sanz E., Schaaff-Gerstenschlaeger I., Scherens B., Schweitzer B., Shu Y., Skala J., Slonimski P.P., Sor F., Soustelle C., Spiegelberg R., Stateva L.I., Steensma H.Y., Steiner S., Thierry A., Thireos G., Tzermia M., Urrestarazu L.A., Valle G., Vetter I., van Vliet-Reedijk J.C., Voet M., Volckaert G., Vreken P., Wang H., Warmington J.R., von Wettstein D., Wicksteed B.L., Wilson C., Wurst H., Xu G., Yoshikawa A., Zimmermann F.K., Sgouros J.G.
    Nature 357:38-46(1992) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  2. Cited for: GENOME REANNOTATION.
    Strain: ATCC 204508 / S288c.
  3. Valles G., Volckaerts G.
    Submitted (JUN-2001) to the EMBL/GenBank/DDBJ databases
    Cited for: SEQUENCE REVISION TO 85; 132 AND 246.
  4. Cited for: IDENTIFICATION AS PART OF TRANSPOSON TY5-1.

Entry informationi

Entry nameiYCH4_YEAST
AccessioniPrimary (citable) accession number: P25600
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 1, 1992
Last sequence update: July 19, 2005
Last modified: June 11, 2014
This is version 70 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Caution

Could be the product of a pseudogene. This is a truncated part of a POL protein in the mutated, non-functional YCLWTy5-1 transposon.

Keywords - Technical termi

Complete proteome, Reference proteome, Transposable element

Documents

  1. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  2. Yeast chromosome III
    Yeast (Saccharomyces cerevisiae) chromosome III: entries and gene names

External Data

Dasty 3

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