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P25600 (YCH4_YEAST) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 68. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Putative transposon Ty5-1 protein YCL074W
Gene names
Name:TY5A
Ordered Locus Names:YCL074W
ORF Names:YCL74W
OrganismSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) [Reference proteome]
Taxonomic identifier559292 [NCBI]
Taxonomic lineageEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces

Protein attributes

Sequence length308 AA.
Sequence statusComplete.
Protein existenceUncertain

General annotation (Comments)

Caution

Could be the product of a pseudogene. This is a truncated part of a POL protein in the mutated, non-functional YCLWTy5-1 transposon.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 308308Putative transposon Ty5-1 protein YCL074W
PRO_0000203503

Sequences

Sequence LengthMass (Da)Tools
P25600 [UniParc].

Last modified July 19, 2005. Version 2.
Checksum: 63CB03A9AB42E733

FASTA30834,507
        10         20         30         40         50         60 
MDVDTAFLNS TMDEPIYVKQ PPGFVNERNP DYVWELYGGM YGLKQAPLLW NEHINNTLKK 

        70         80         90        100        110        120 
IGFCRHEGEH GLYFRSTSDG PIYIAVYVDD LLVAAPSPKI YDRVKQELTK LYSMKDLGKV 

       130        140        150        160        170        180 
DKFLGLNIHQ SSNGDITLSL QDYIAKAASE SEINTFKLTQ TPLCNSKPLF ETTSPHLKDI 

       190        200        210        220        230        240 
TPYQSIVGQL LFCANTGRPD ISYPVSLLSR FLREPRAIHL ESARRVLRYL YTTRSMCLKY 

       250        260        270        280        290        300 
RSGSQLALTV YCDASHGAIH DLPHSTGGYV TLLAGAPVTW SSKKLKGVIP VPSTEAEYIT 


ASETVMEI 

« Hide

References

« Hide 'large scale' references
[1]"The complete DNA sequence of yeast chromosome III."
Oliver S.G., van der Aart Q.J.M., Agostoni-Carbone M.L., Aigle M., Alberghina L., Alexandraki D., Antoine G., Anwar R., Ballesta J.P.G., Benit P., Berben G., Bergantino E., Biteau N., Bolle P.-A., Bolotin-Fukuhara M., Brown A., Brown A.J.P., Buhler J.-M. expand/collapse author list , Carcano C., Carignani G., Cederberg H., Chanet R., Contreras R., Crouzet M., Daignan-Fornier B., Defoor E., Delgado M.D., Demolder J., Doira C., Dubois E., Dujon B., Duesterhoeft A., Erdmann D., Esteban M., Fabre F., Fairhead C., Faye G., Feldmann H., Fiers W., Francingues-Gaillard M.-C., Franco L., Frontali L., Fukuhara H., Fuller L.J., Galland P., Gent M.E., Gigot D., Gilliquet V., Glansdorff N., Goffeau A., Grenson M., Grisanti P., Grivell L.A., de Haan M., Haasemann M., Hatat D., Hoenicka J., Hegemann J.H., Herbert C.J., Hilger F., Hohmann S., Hollenberg C.P., Huse K., Iborra F., Indge K.J., Isono K., Jacq C., Jacquet M., James C.M., Jauniaux J.-C., Jia Y., Jimenez A., Kelly A., Kleinhans U., Kreisl P., Lanfranchi G., Lewis C., van der Linden C.G., Lucchini G., Lutzenkirchen K., Maat M.J., Mallet L., Mannhaupt G., Martegani E., Mathieu A., Maurer C.T.C., McConnell D., McKee R.A., Messenguy F., Mewes H.-W., Molemans F., Montague M.A., Muzi Falconi M., Navas L., Newlon C.S., Noone D., Pallier C., Panzeri L., Pearson B.M., Perea J., Philippsen P., Pierard A., Planta R.J., Plevani P., Poetsch B., Pohl F.M., Purnelle B., Ramezani Rad M., Rasmussen S.W., Raynal A., Remacha M.A., Richterich P., Roberts A.B., Rodriguez F., Sanz E., Schaaff-Gerstenschlaeger I., Scherens B., Schweitzer B., Shu Y., Skala J., Slonimski P.P., Sor F., Soustelle C., Spiegelberg R., Stateva L.I., Steensma H.Y., Steiner S., Thierry A., Thireos G., Tzermia M., Urrestarazu L.A., Valle G., Vetter I., van Vliet-Reedijk J.C., Voet M., Volckaert G., Vreken P., Wang H., Warmington J.R., von Wettstein D., Wicksteed B.L., Wilson C., Wurst H., Xu G., Yoshikawa A., Zimmermann F.K., Sgouros J.G.
Nature 357:38-46(1992) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 204508 / S288c.
[2]Saccharomyces Genome Database
Submitted (DEC-2009) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: ATCC 204508 / S288c.
[3]Valles G., Volckaerts G.
Submitted (JUN-2001) to the EMBL/GenBank/DDBJ databases
Cited for: SEQUENCE REVISION TO 85; 132 AND 246.
[4]"Yeast retrotransposon revealed."
Voytas D.F., Boeke J.D.
Nature 358:717-717(1992) [PubMed] [Europe PMC] [Abstract]
Cited for: IDENTIFICATION AS PART OF TRANSPOSON TY5-1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
X59720 Genomic DNA. No translation available.
BK006937 Genomic DNA. No translation available.
PIRS19406.

3D structure databases

ProteinModelPortalP25600.
SMRP25600. Positions 34-59.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

DIPDIP-7287N.
MINTMINT-552220.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Organism-specific databases

SGDS000000579. YCL074W.

Phylogenomic databases

OrthoDBEOG7KH9VP.

Gene expression databases

GenevestigatorP25600.

Family and domain databases

InterProIPR013103. RVT_2.
[Graphical view]
PfamPF07727. RVT_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameYCH4_YEAST
AccessionPrimary (citable) accession number: P25600
Entry history
Integrated into UniProtKB/Swiss-Prot: May 1, 1992
Last sequence update: July 19, 2005
Last modified: April 16, 2014
This is version 68 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Relevant documents

Yeast chromosome III

Yeast (Saccharomyces cerevisiae) chromosome III: entries and gene names

Yeast

Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD