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P25600

- YCH4_YEAST

UniProt

P25600 - YCH4_YEAST

Protein

Putative transposon Ty5-1 protein YCL074W

Gene

TY5A

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 2 out of 5- Protein uncertaini
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    • History
      Entry version 71 (01 Oct 2014)
      Sequence version 2 (19 Jul 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. DNA-directed DNA polymerase activity Source: SGD
    2. peptidase activity Source: SGD
    3. ribonuclease activity Source: SGD
    4. RNA binding Source: SGD
    5. RNA-directed DNA polymerase activity Source: SGD

    GO - Biological processi

    1. DNA-dependent DNA replication Source: GOC
    2. proteolysis Source: GOC
    3. RNA-dependent DNA replication Source: GOC
    4. RNA phosphodiester bond hydrolysis Source: GOC
    5. transposition, RNA-mediated Source: SGD

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Putative transposon Ty5-1 protein YCL074W
    Gene namesi
    Name:TY5A
    Ordered Locus Names:YCL074W
    ORF Names:YCL74W
    OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
    Taxonomic identifieri559292 [NCBI]
    Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
    ProteomesiUP000002311: Chromosome III

    Organism-specific databases

    SGDiS000000579. YCL074W.

    Subcellular locationi

    GO - Cellular componenti

    1. retrotransposon nucleocapsid Source: SGD

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 308308Putative transposon Ty5-1 protein YCL074WPRO_0000203503Add
    BLAST

    Expressioni

    Gene expression databases

    GenevestigatoriP25600.

    Interactioni

    Protein-protein interaction databases

    DIPiDIP-7287N.
    MINTiMINT-552220.

    Structurei

    3D structure databases

    ProteinModelPortaliP25600.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    OrthoDBiEOG7KH9VP.

    Family and domain databases

    InterProiIPR013103. RVT_2.
    [Graphical view]
    PfamiPF07727. RVT_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P25600-1 [UniParc]FASTAAdd to Basket

    « Hide

    MDVDTAFLNS TMDEPIYVKQ PPGFVNERNP DYVWELYGGM YGLKQAPLLW    50
    NEHINNTLKK IGFCRHEGEH GLYFRSTSDG PIYIAVYVDD LLVAAPSPKI 100
    YDRVKQELTK LYSMKDLGKV DKFLGLNIHQ SSNGDITLSL QDYIAKAASE 150
    SEINTFKLTQ TPLCNSKPLF ETTSPHLKDI TPYQSIVGQL LFCANTGRPD 200
    ISYPVSLLSR FLREPRAIHL ESARRVLRYL YTTRSMCLKY RSGSQLALTV 250
    YCDASHGAIH DLPHSTGGYV TLLAGAPVTW SSKKLKGVIP VPSTEAEYIT 300
    ASETVMEI 308
    Length:308
    Mass (Da):34,507
    Last modified:July 19, 2005 - v2
    Checksum:i63CB03A9AB42E733
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X59720 Genomic DNA. No translation available.
    BK006937 Genomic DNA. No translation available.
    PIRiS19406.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X59720 Genomic DNA. No translation available.
    BK006937 Genomic DNA. No translation available.
    PIRi S19406.

    3D structure databases

    ProteinModelPortali P25600.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    DIPi DIP-7287N.
    MINTi MINT-552220.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Organism-specific databases

    SGDi S000000579. YCL074W.

    Phylogenomic databases

    OrthoDBi EOG7KH9VP.

    Gene expression databases

    Genevestigatori P25600.

    Family and domain databases

    InterProi IPR013103. RVT_2.
    [Graphical view ]
    Pfami PF07727. RVT_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The complete DNA sequence of yeast chromosome III."
      Oliver S.G., van der Aart Q.J.M., Agostoni-Carbone M.L., Aigle M., Alberghina L., Alexandraki D., Antoine G., Anwar R., Ballesta J.P.G., Benit P., Berben G., Bergantino E., Biteau N., Bolle P.-A., Bolotin-Fukuhara M., Brown A., Brown A.J.P., Buhler J.-M.
      , Carcano C., Carignani G., Cederberg H., Chanet R., Contreras R., Crouzet M., Daignan-Fornier B., Defoor E., Delgado M.D., Demolder J., Doira C., Dubois E., Dujon B., Duesterhoeft A., Erdmann D., Esteban M., Fabre F., Fairhead C., Faye G., Feldmann H., Fiers W., Francingues-Gaillard M.-C., Franco L., Frontali L., Fukuhara H., Fuller L.J., Galland P., Gent M.E., Gigot D., Gilliquet V., Glansdorff N., Goffeau A., Grenson M., Grisanti P., Grivell L.A., de Haan M., Haasemann M., Hatat D., Hoenicka J., Hegemann J.H., Herbert C.J., Hilger F., Hohmann S., Hollenberg C.P., Huse K., Iborra F., Indge K.J., Isono K., Jacq C., Jacquet M., James C.M., Jauniaux J.-C., Jia Y., Jimenez A., Kelly A., Kleinhans U., Kreisl P., Lanfranchi G., Lewis C., van der Linden C.G., Lucchini G., Lutzenkirchen K., Maat M.J., Mallet L., Mannhaupt G., Martegani E., Mathieu A., Maurer C.T.C., McConnell D., McKee R.A., Messenguy F., Mewes H.-W., Molemans F., Montague M.A., Muzi Falconi M., Navas L., Newlon C.S., Noone D., Pallier C., Panzeri L., Pearson B.M., Perea J., Philippsen P., Pierard A., Planta R.J., Plevani P., Poetsch B., Pohl F.M., Purnelle B., Ramezani Rad M., Rasmussen S.W., Raynal A., Remacha M.A., Richterich P., Roberts A.B., Rodriguez F., Sanz E., Schaaff-Gerstenschlaeger I., Scherens B., Schweitzer B., Shu Y., Skala J., Slonimski P.P., Sor F., Soustelle C., Spiegelberg R., Stateva L.I., Steensma H.Y., Steiner S., Thierry A., Thireos G., Tzermia M., Urrestarazu L.A., Valle G., Vetter I., van Vliet-Reedijk J.C., Voet M., Volckaert G., Vreken P., Wang H., Warmington J.R., von Wettstein D., Wicksteed B.L., Wilson C., Wurst H., Xu G., Yoshikawa A., Zimmermann F.K., Sgouros J.G.
      Nature 357:38-46(1992) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 204508 / S288c.
    2. Cited for: GENOME REANNOTATION.
      Strain: ATCC 204508 / S288c.
    3. Valles G., Volckaerts G.
      Submitted (JUN-2001) to the EMBL/GenBank/DDBJ databases
      Cited for: SEQUENCE REVISION TO 85; 132 AND 246.
    4. Cited for: IDENTIFICATION AS PART OF TRANSPOSON TY5-1.

    Entry informationi

    Entry nameiYCH4_YEAST
    AccessioniPrimary (citable) accession number: P25600
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 1, 1992
    Last sequence update: July 19, 2005
    Last modified: October 1, 2014
    This is version 71 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programFungal Protein Annotation Program

    Miscellaneousi

    Caution

    Could be the product of a pseudogene. This is a truncated part of a POL protein in the mutated, non-functional YCLWTy5-1 transposon.Curated

    Keywords - Technical termi

    Complete proteome, Reference proteome, Transposable element

    Documents

    1. Yeast
      Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
    2. Yeast chromosome III
      Yeast (Saccharomyces cerevisiae) chromosome III: entries and gene names

    External Data

    Dasty 3