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Protein

Protein LDB16

Gene

LDB16

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

May be involved in protein-linked oligosaccharide phosphorylation since the deletion reduces the negative charge of the cell surface.1 Publication

GO - Biological processi

  • lipid particle organization Source: SGD
Complete GO annotation...

Enzyme and pathway databases

BioCyciYEAST:G3O-29277-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein LDB16
Alternative name(s):
Low dye-binding protein 16
Gene namesi
Name:LDB16
Ordered Locus Names:YCL005W
ORF Names:YCL5W
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
Proteomesi
  • UP000002311 Componenti: Chromosome III

Organism-specific databases

EuPathDBiFungiDB:YCL005W.
SGDiS000000511. LDB16.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei1 – 21HelicalSequence analysisAdd BLAST21
Transmembranei22 – 42HelicalSequence analysisAdd BLAST21
Topological domaini43 – 75ExtracellularSequence analysisAdd BLAST33
Transmembranei76 – 96HelicalSequence analysisAdd BLAST21
Topological domaini97 – 256CytoplasmicSequence analysisAdd BLAST160

GO - Cellular componenti

  • integral component of endoplasmic reticulum membrane Source: SGD
  • lipid particle Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Lipid droplet, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002025381 – 256Protein LDB16Add BLAST256

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei180PhosphothreonineCombined sources1
Modified residuei184PhosphothreonineCombined sources1
Modified residuei241PhosphoserineCombined sources1

Keywords - PTMi

Phosphoprotein

Proteomic databases

PRIDEiP25587.

PTM databases

iPTMnetiP25587.

Interactioni

Protein-protein interaction databases

BioGridi30974. 8 interactors.
DIPiDIP-5141N.
IntActiP25587. 2 interactors.
MINTiMINT-531438.

Structurei

3D structure databases

ProteinModelPortaliP25587.
SMRiP25587.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

InParanoidiP25587.
OrthoDBiEOG092C4AQE.

Sequencei

Sequence statusi: Complete.

P25587-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFVVDWSVQL CMGVISPLFR ALVQLPLSIF VWNGFQLVAL PINIPLRLFL
60 70 80 90 100
GTSLSRLVAQ TSTLDFYVVL TLFQYFAVLC AFGSIIGLIF GFILGVFHSI
110 120 130 140 150
CGVPSVYISL EWKRWFAPIR TVLERASTSI VNIMRGQTIA PIPMPKPNPT
160 170 180 190 200
HISKPNMKKF HDEPGADDMT ITHDVNCYIT PCQTPTNEKI QHYNNDSFNT
210 220 230 240 250
TTTDDEPTDI WDRSDTYQNS FVTNETLMSL SNRAKLRRNA SDADIVNIKI

LRRNSR
Length:256
Mass (Da):29,024
Last modified:May 16, 2003 - v2
Checksum:i49C8084FFCAF50E3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X59720 Genomic DNA. Translation: CAC42965.1.
BK006937 Genomic DNA. Translation: DAA07475.1.
PIRiS19390.
RefSeqiNP_009922.2. NM_001178654.1.

Genome annotation databases

EnsemblFungiiCAC42965; CAC42965; CAC42965.
YCL005W; YCL005W; YCL005W.
GeneIDi850351.
KEGGisce:YCL005W.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X59720 Genomic DNA. Translation: CAC42965.1.
BK006937 Genomic DNA. Translation: DAA07475.1.
PIRiS19390.
RefSeqiNP_009922.2. NM_001178654.1.

3D structure databases

ProteinModelPortaliP25587.
SMRiP25587.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi30974. 8 interactors.
DIPiDIP-5141N.
IntActiP25587. 2 interactors.
MINTiMINT-531438.

PTM databases

iPTMnetiP25587.

Proteomic databases

PRIDEiP25587.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiCAC42965; CAC42965; CAC42965.
YCL005W; YCL005W; YCL005W.
GeneIDi850351.
KEGGisce:YCL005W.

Organism-specific databases

EuPathDBiFungiDB:YCL005W.
SGDiS000000511. LDB16.

Phylogenomic databases

InParanoidiP25587.
OrthoDBiEOG092C4AQE.

Enzyme and pathway databases

BioCyciYEAST:G3O-29277-MONOMER.

Miscellaneous databases

PROiP25587.

Family and domain databases

ProtoNetiSearch...

Entry informationi

Entry nameiLDB16_YEAST
AccessioniPrimary (citable) accession number: P25587
Secondary accession number(s): D6VR06, Q8NIM5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 1, 1992
Last sequence update: May 16, 2003
Last modified: November 2, 2016
This is version 104 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 149 molecules/cell in log phase SD medium.1 Publication

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  2. Yeast chromosome III
    Yeast (Saccharomyces cerevisiae) chromosome III: entries and gene names

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.