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P25565

- YCA2_YEAST

UniProt

P25565 - YCA2_YEAST

Protein

Putative uncharacterized protein YCL002C

Gene

YCL002C

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 86 (01 Oct 2014)
      Sequence version 4 (27 Jul 2011)
      Previous versions | rss
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    Functioni

    Enzyme and pathway databases

    BioCyciYEAST:G3O-29276-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Putative uncharacterized protein YCL002C
    Gene namesi
    Ordered Locus Names:YCL002C
    ORF Names:YCL2C
    OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
    Taxonomic identifieri559292 [NCBI]
    Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
    ProteomesiUP000002311: Chromosome III

    Organism-specific databases

    CYGDiYCL002c.
    SGDiS000000508. YCL002C.

    Subcellular locationi

    GO - Cellular componenti

    1. integral component of membrane Source: UniProtKB-KW

    Keywords - Cellular componenti

    Membrane

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 263263Putative uncharacterized protein YCL002CPRO_0000202537Add
    BLAST

    Expressioni

    Gene expression databases

    GenevestigatoriP25565.

    Interactioni

    Protein-protein interaction databases

    BioGridi30976. 22 interactions.
    IntActiP25565. 1 interaction.
    STRINGi4932.YCL002C.

    Structurei

    Transmembrane

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transmembranei1 – 2121HelicalSequence AnalysisAdd
    BLAST
    Transmembranei38 – 5821HelicalSequence AnalysisAdd
    BLAST
    Transmembranei82 – 10221HelicalSequence AnalysisAdd
    BLAST
    Transmembranei118 – 13821HelicalSequence AnalysisAdd
    BLAST
    Transmembranei151 – 17121HelicalSequence AnalysisAdd
    BLAST
    Transmembranei196 – 21621HelicalSequence AnalysisAdd
    BLAST
    Transmembranei230 – 25021HelicalSequence AnalysisAdd
    BLAST

    Family & Domainsi

    Keywords - Domaini

    Transmembrane, Transmembrane helix

    Phylogenomic databases

    eggNOGiNOG80971.
    HOGENOMiHOG000142057.
    OMAiFYLEHIN.
    OrthoDBiEOG7J44JH.

    Sequencei

    Sequence statusi: Complete.

    P25565-1 [UniParc]FASTAAdd to Basket

    « Hide

    MLVIVLQGLA GFLSIIAILC QKRYNKLHRS IYGLSYDLFL LDFVGNGLYL    50
    YCALHYCYSS LVREQLSQRF PLFYPLNDAR SIPISSFLIL KDFCVSCCCM 100
    MVLRQLYYYR STKHIYQGIS ITSIIIISVF LVLGIFTYGC SISNLPLKNS 150
    GKFGVFYLEH INYLWVMANL LKCFKYVPQM SINWMGCSTV GLSSKFALIS 200
    FLAESIDLLG RLVIPTNALF YEIPFNSTPF WVKLIQFVTL LVILCQVQYV 250
    YVGRKPRLPK GKL 263
    Length:263
    Mass (Da):30,197
    Last modified:July 27, 2011 - v4
    Checksum:iE8ED84B6D9EA7BF0
    GO

    Sequence cautioni

    The sequence CAC42967.1 differs from that shown. Reason: Frameshift at position 240.
    The sequence CAC42967.1 differs from that shown. Reason: Erroneous gene model prediction.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X59720 Genomic DNA. Translation: CAC42967.1. Sequence problems.
    BK006937 Genomic DNA. Translation: DAA07477.2.
    PIRiS19357.
    RefSeqiNP_009924.4. NM_001178652.2.

    Genome annotation databases

    EnsemblFungiiYCL002C; YCL002C; YCL002C.
    GeneIDi850353.
    KEGGisce:YCL002C.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X59720 Genomic DNA. Translation: CAC42967.1 . Sequence problems.
    BK006937 Genomic DNA. Translation: DAA07477.2 .
    PIRi S19357.
    RefSeqi NP_009924.4. NM_001178652.2.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 30976. 22 interactions.
    IntActi P25565. 1 interaction.
    STRINGi 4932.YCL002C.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblFungii YCL002C ; YCL002C ; YCL002C .
    GeneIDi 850353.
    KEGGi sce:YCL002C.

    Organism-specific databases

    CYGDi YCL002c.
    SGDi S000000508. YCL002C.

    Phylogenomic databases

    eggNOGi NOG80971.
    HOGENOMi HOG000142057.
    OMAi FYLEHIN.
    OrthoDBi EOG7J44JH.

    Enzyme and pathway databases

    BioCyci YEAST:G3O-29276-MONOMER.

    Miscellaneous databases

    NextBioi 965818.

    Gene expression databases

    Genevestigatori P25565.

    Family and domain databases

    ProtoNeti Search...

    Publicationsi

    1. "The complete DNA sequence of yeast chromosome III."
      Oliver S.G., van der Aart Q.J.M., Agostoni-Carbone M.L., Aigle M., Alberghina L., Alexandraki D., Antoine G., Anwar R., Ballesta J.P.G., Benit P., Berben G., Bergantino E., Biteau N., Bolle P.-A., Bolotin-Fukuhara M., Brown A., Brown A.J.P., Buhler J.-M.
      , Carcano C., Carignani G., Cederberg H., Chanet R., Contreras R., Crouzet M., Daignan-Fornier B., Defoor E., Delgado M.D., Demolder J., Doira C., Dubois E., Dujon B., Duesterhoeft A., Erdmann D., Esteban M., Fabre F., Fairhead C., Faye G., Feldmann H., Fiers W., Francingues-Gaillard M.-C., Franco L., Frontali L., Fukuhara H., Fuller L.J., Galland P., Gent M.E., Gigot D., Gilliquet V., Glansdorff N., Goffeau A., Grenson M., Grisanti P., Grivell L.A., de Haan M., Haasemann M., Hatat D., Hoenicka J., Hegemann J.H., Herbert C.J., Hilger F., Hohmann S., Hollenberg C.P., Huse K., Iborra F., Indge K.J., Isono K., Jacq C., Jacquet M., James C.M., Jauniaux J.-C., Jia Y., Jimenez A., Kelly A., Kleinhans U., Kreisl P., Lanfranchi G., Lewis C., van der Linden C.G., Lucchini G., Lutzenkirchen K., Maat M.J., Mallet L., Mannhaupt G., Martegani E., Mathieu A., Maurer C.T.C., McConnell D., McKee R.A., Messenguy F., Mewes H.-W., Molemans F., Montague M.A., Muzi Falconi M., Navas L., Newlon C.S., Noone D., Pallier C., Panzeri L., Pearson B.M., Perea J., Philippsen P., Pierard A., Planta R.J., Plevani P., Poetsch B., Pohl F.M., Purnelle B., Ramezani Rad M., Rasmussen S.W., Raynal A., Remacha M.A., Richterich P., Roberts A.B., Rodriguez F., Sanz E., Schaaff-Gerstenschlaeger I., Scherens B., Schweitzer B., Shu Y., Skala J., Slonimski P.P., Sor F., Soustelle C., Spiegelberg R., Stateva L.I., Steensma H.Y., Steiner S., Thierry A., Thireos G., Tzermia M., Urrestarazu L.A., Valle G., Vetter I., van Vliet-Reedijk J.C., Voet M., Volckaert G., Vreken P., Wang H., Warmington J.R., von Wettstein D., Wicksteed B.L., Wilson C., Wurst H., Xu G., Yoshikawa A., Zimmermann F.K., Sgouros J.G.
      Nature 357:38-46(1992) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 204508 / S288c.
    2. Valles G., Volckaerts G.
      Submitted (JUN-2001) to the EMBL/GenBank/DDBJ databases
      Cited for: SEQUENCE REVISION.
    3. Cited for: GENOME REANNOTATION, SEQUENCE REVISION TO 240.
      Strain: ATCC 204508 / S288c.
    4. "Finding functional features in Saccharomyces genomes by phylogenetic footprinting."
      Cliften P.F., Sudarsanam P., Desikan A., Fulton L., Fulton B., Majors J., Waterston R., Cohen B.A., Johnston M.
      Science 301:71-76(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: REVISION OF GENE MODEL.

    Entry informationi

    Entry nameiYCA2_YEAST
    AccessioniPrimary (citable) accession number: P25565
    Secondary accession number(s): D6VR08, Q8NIM4
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 1, 1992
    Last sequence update: July 27, 2011
    Last modified: October 1, 2014
    This is version 86 of the entry and version 4 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programFungal Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Yeast
      Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
    2. Yeast chromosome III
      Yeast (Saccharomyces cerevisiae) chromosome III: entries and gene names

    External Data

    Dasty 3