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Protein

Putative uncharacterized protein YCL002C

Gene

YCL002C

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciYEAST:G3O-29276-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative uncharacterized protein YCL002C
Gene namesi
Ordered Locus Names:YCL002C
ORF Names:YCL2C
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
ProteomesiUP000002311 Componenti: Chromosome III

Organism-specific databases

CYGDiYCL002c.
SGDiS000000508. YCL002C.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei1 – 2121HelicalSequence AnalysisAdd
BLAST
Transmembranei38 – 5821HelicalSequence AnalysisAdd
BLAST
Transmembranei82 – 10221HelicalSequence AnalysisAdd
BLAST
Transmembranei118 – 13821HelicalSequence AnalysisAdd
BLAST
Transmembranei151 – 17121HelicalSequence AnalysisAdd
BLAST
Transmembranei196 – 21621HelicalSequence AnalysisAdd
BLAST
Transmembranei230 – 25021HelicalSequence AnalysisAdd
BLAST

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 263263Putative uncharacterized protein YCL002CPRO_0000202537Add
BLAST

Expressioni

Gene expression databases

GenevestigatoriP25565.

Interactioni

Protein-protein interaction databases

BioGridi30976. 22 interactions.
IntActiP25565. 1 interaction.
STRINGi4932.YCL002C.

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiNOG80971.
HOGENOMiHOG000142057.
InParanoidiP25565.
OMAiFYLEHIN.
OrthoDBiEOG7J44JH.

Sequencei

Sequence statusi: Complete.

P25565-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLVIVLQGLA GFLSIIAILC QKRYNKLHRS IYGLSYDLFL LDFVGNGLYL
60 70 80 90 100
YCALHYCYSS LVREQLSQRF PLFYPLNDAR SIPISSFLIL KDFCVSCCCM
110 120 130 140 150
MVLRQLYYYR STKHIYQGIS ITSIIIISVF LVLGIFTYGC SISNLPLKNS
160 170 180 190 200
GKFGVFYLEH INYLWVMANL LKCFKYVPQM SINWMGCSTV GLSSKFALIS
210 220 230 240 250
FLAESIDLLG RLVIPTNALF YEIPFNSTPF WVKLIQFVTL LVILCQVQYV
260
YVGRKPRLPK GKL
Length:263
Mass (Da):30,197
Last modified:July 27, 2011 - v4
Checksum:iE8ED84B6D9EA7BF0
GO

Sequence cautioni

The sequence CAC42967.1 differs from that shown. Reason: Frameshift at position 240. Curated
The sequence CAC42967.1 differs from that shown. Reason: Erroneous gene model prediction. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X59720 Genomic DNA. Translation: CAC42967.1. Sequence problems.
BK006937 Genomic DNA. Translation: DAA07477.2.
PIRiS19357.
RefSeqiNP_009924.4. NM_001178652.2.

Genome annotation databases

EnsemblFungiiYCL002C; YCL002C; YCL002C.
GeneIDi850353.
KEGGisce:YCL002C.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X59720 Genomic DNA. Translation: CAC42967.1. Sequence problems.
BK006937 Genomic DNA. Translation: DAA07477.2.
PIRiS19357.
RefSeqiNP_009924.4. NM_001178652.2.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi30976. 22 interactions.
IntActiP25565. 1 interaction.
STRINGi4932.YCL002C.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiYCL002C; YCL002C; YCL002C.
GeneIDi850353.
KEGGisce:YCL002C.

Organism-specific databases

CYGDiYCL002c.
SGDiS000000508. YCL002C.

Phylogenomic databases

eggNOGiNOG80971.
HOGENOMiHOG000142057.
InParanoidiP25565.
OMAiFYLEHIN.
OrthoDBiEOG7J44JH.

Enzyme and pathway databases

BioCyciYEAST:G3O-29276-MONOMER.

Miscellaneous databases

NextBioi965818.

Gene expression databases

GenevestigatoriP25565.

Family and domain databases

ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The complete DNA sequence of yeast chromosome III."
    Oliver S.G., van der Aart Q.J.M., Agostoni-Carbone M.L., Aigle M., Alberghina L., Alexandraki D., Antoine G., Anwar R., Ballesta J.P.G., Benit P., Berben G., Bergantino E., Biteau N., Bolle P.-A., Bolotin-Fukuhara M., Brown A., Brown A.J.P., Buhler J.-M.
    , Carcano C., Carignani G., Cederberg H., Chanet R., Contreras R., Crouzet M., Daignan-Fornier B., Defoor E., Delgado M.D., Demolder J., Doira C., Dubois E., Dujon B., Duesterhoeft A., Erdmann D., Esteban M., Fabre F., Fairhead C., Faye G., Feldmann H., Fiers W., Francingues-Gaillard M.-C., Franco L., Frontali L., Fukuhara H., Fuller L.J., Galland P., Gent M.E., Gigot D., Gilliquet V., Glansdorff N., Goffeau A., Grenson M., Grisanti P., Grivell L.A., de Haan M., Haasemann M., Hatat D., Hoenicka J., Hegemann J.H., Herbert C.J., Hilger F., Hohmann S., Hollenberg C.P., Huse K., Iborra F., Indge K.J., Isono K., Jacq C., Jacquet M., James C.M., Jauniaux J.-C., Jia Y., Jimenez A., Kelly A., Kleinhans U., Kreisl P., Lanfranchi G., Lewis C., van der Linden C.G., Lucchini G., Lutzenkirchen K., Maat M.J., Mallet L., Mannhaupt G., Martegani E., Mathieu A., Maurer C.T.C., McConnell D., McKee R.A., Messenguy F., Mewes H.-W., Molemans F., Montague M.A., Muzi Falconi M., Navas L., Newlon C.S., Noone D., Pallier C., Panzeri L., Pearson B.M., Perea J., Philippsen P., Pierard A., Planta R.J., Plevani P., Poetsch B., Pohl F.M., Purnelle B., Ramezani Rad M., Rasmussen S.W., Raynal A., Remacha M.A., Richterich P., Roberts A.B., Rodriguez F., Sanz E., Schaaff-Gerstenschlaeger I., Scherens B., Schweitzer B., Shu Y., Skala J., Slonimski P.P., Sor F., Soustelle C., Spiegelberg R., Stateva L.I., Steensma H.Y., Steiner S., Thierry A., Thireos G., Tzermia M., Urrestarazu L.A., Valle G., Vetter I., van Vliet-Reedijk J.C., Voet M., Volckaert G., Vreken P., Wang H., Warmington J.R., von Wettstein D., Wicksteed B.L., Wilson C., Wurst H., Xu G., Yoshikawa A., Zimmermann F.K., Sgouros J.G.
    Nature 357:38-46(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  2. Valles G., Volckaerts G.
    Submitted (MAY-2001) to the EMBL/GenBank/DDBJ databases
    Cited for: SEQUENCE REVISION.
  3. Cited for: GENOME REANNOTATION, SEQUENCE REVISION TO 240.
    Strain: ATCC 204508 / S288c.
  4. "Finding functional features in Saccharomyces genomes by phylogenetic footprinting."
    Cliften P.F., Sudarsanam P., Desikan A., Fulton L., Fulton B., Majors J., Waterston R., Cohen B.A., Johnston M.
    Science 301:71-76(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: REVISION OF GENE MODEL.

Entry informationi

Entry nameiYCA2_YEAST
AccessioniPrimary (citable) accession number: P25565
Secondary accession number(s): D6VR08, Q8NIM4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 1, 1992
Last sequence update: July 27, 2011
Last modified: January 7, 2015
This is version 88 of the entry and version 4 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  2. Yeast chromosome III
    Yeast (Saccharomyces cerevisiae) chromosome III: entries and gene names

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.