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Protein

UPF0758 protein YicR

Gene

yicR

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG11312-MONOMER.
ECOL316407:JW5643-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0758 protein YicR
Gene namesi
Name:yicR
Ordered Locus Names:b3638, JW5643
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11312. yicR.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001906941 – 222UPF0758 protein YicRAdd BLAST222

Proteomic databases

PaxDbiP25531.
PRIDEiP25531.

Interactioni

Protein-protein interaction databases

BioGridi4261656. 200 interactors.
DIPiDIP-10636N.
IntActiP25531. 2 interactors.
MINTiMINT-1313016.
STRINGi511145.b3638.

Structurei

3D structure databases

ProteinModelPortaliP25531.
SMRiP25531.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0758 family. YicR subfamily.Curated

Phylogenomic databases

eggNOGiENOG4105W5Q. Bacteria.
COG2003. LUCA.
HOGENOMiHOG000273376.
InParanoidiP25531.
KOiK03630.
OMAiPHEEFWV.
PhylomeDBiP25531.

Family and domain databases

CDDicd08071. MPN_DUF2466. 1 hit.
HAMAPiMF_00018. UPF0758_YicR. 1 hit.
InterProiIPR001405. RadC.
IPR025657. RadC_JAB.
IPR010994. RuvA_2-like.
IPR020891. UPF0758_CS.
IPR022820. UPF0758_YicR.
[Graphical view]
PfamiPF04002. RadC. 1 hit.
[Graphical view]
SUPFAMiSSF47781. SSF47781. 1 hit.
TIGRFAMsiTIGR00608. radc. 1 hit.
PROSITEiPS01302. UPF0758. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P25531-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKNNSQLLMP REKMLKFGIS ALTDVELLAL FLRTGTRGKD VLTLAKEMLE
60 70 80 90 100
NFGSLYGLLT SEYEQFSGVH GIGVAKFAQL KGIAELARRY YNVRMREESP
110 120 130 140 150
LLSPEMTREF LQSQLTGEER EIFMVIFLDS QHRVITHRRL FSGTLNHVEV
160 170 180 190 200
HPREIIREAI KINASALILA HNHPSGCAEP SKADKLITER IIKSCQFMDL
210 220
RVLDHIVIGR GEYVSFAERG WI
Length:222
Mass (Da):25,343
Last modified:May 30, 2000 - v3
Checksum:i1E825DEB596D742A
GO

Sequence cautioni

The sequence AAA61991 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L10328 Genomic DNA. Translation: AAA61991.1. Different initiation.
U00096 Genomic DNA. Translation: AAC76662.2.
AP009048 Genomic DNA. Translation: BAE77654.1.
X63366 Genomic DNA. Translation: CAA44966.1.
X63367 Genomic DNA. Translation: CAA44967.1.
PIRiH65164.
RefSeqiNP_418095.4. NC_000913.3.
WP_001350561.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76662; AAC76662; b3638.
BAE77654; BAE77654; BAE77654.
GeneIDi948968.
KEGGiecj:JW5643.
eco:b3638.
PATRICi32122763. VBIEscCol129921_3758.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L10328 Genomic DNA. Translation: AAA61991.1. Different initiation.
U00096 Genomic DNA. Translation: AAC76662.2.
AP009048 Genomic DNA. Translation: BAE77654.1.
X63366 Genomic DNA. Translation: CAA44966.1.
X63367 Genomic DNA. Translation: CAA44967.1.
PIRiH65164.
RefSeqiNP_418095.4. NC_000913.3.
WP_001350561.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP25531.
SMRiP25531.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261656. 200 interactors.
DIPiDIP-10636N.
IntActiP25531. 2 interactors.
MINTiMINT-1313016.
STRINGi511145.b3638.

Proteomic databases

PaxDbiP25531.
PRIDEiP25531.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76662; AAC76662; b3638.
BAE77654; BAE77654; BAE77654.
GeneIDi948968.
KEGGiecj:JW5643.
eco:b3638.
PATRICi32122763. VBIEscCol129921_3758.

Organism-specific databases

EchoBASEiEB1288.
EcoGeneiEG11312. yicR.

Phylogenomic databases

eggNOGiENOG4105W5Q. Bacteria.
COG2003. LUCA.
HOGENOMiHOG000273376.
InParanoidiP25531.
KOiK03630.
OMAiPHEEFWV.
PhylomeDBiP25531.

Enzyme and pathway databases

BioCyciEcoCyc:EG11312-MONOMER.
ECOL316407:JW5643-MONOMER.

Miscellaneous databases

PROiP25531.

Family and domain databases

CDDicd08071. MPN_DUF2466. 1 hit.
HAMAPiMF_00018. UPF0758_YicR. 1 hit.
InterProiIPR001405. RadC.
IPR025657. RadC_JAB.
IPR010994. RuvA_2-like.
IPR020891. UPF0758_CS.
IPR022820. UPF0758_YicR.
[Graphical view]
PfamiPF04002. RadC. 1 hit.
[Graphical view]
SUPFAMiSSF47781. SSF47781. 1 hit.
TIGRFAMsiTIGR00608. radc. 1 hit.
PROSITEiPS01302. UPF0758. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYICR_ECOLI
AccessioniPrimary (citable) accession number: P25531
Secondary accession number(s): Q2M7V2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 1, 1992
Last sequence update: May 30, 2000
Last modified: November 2, 2016
This is version 133 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Caution

Was originally thought to be the site of the radC102 mutation, but it was subsequently shown that radC102 is an allele of RecG.1 Publication

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.