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P25298

- RNA14_YEAST

UniProt

P25298 - RNA14_YEAST

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Protein

mRNA 3'-end-processing protein RNA14

Gene
RNA14, YMR061W, YM9796.14
Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 5 out of 5 - Experimental evidence at protein leveli

Functioni

Component of the cleavage factor IA (CFIA) complex, which is involved in the endonucleolytic cleavage during polyadenylation-dependent pre-mRNA 3'-end formation and cooperates with the cleavage factor NAB4/CFIB and the cleavage and polyadenylation factor (CPF) complex.2 Publications

GO - Molecular functioni

  1. protein binding Source: IntAct
  2. protein heterodimerization activity Source: SGD

GO - Biological processi

  1. mRNA cleavage Source: SGD
  2. mRNA polyadenylation Source: SGD
Complete GO annotation...

Keywords - Biological processi

mRNA processing

Enzyme and pathway databases

BioCyciYEAST:G3O-32764-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
mRNA 3'-end-processing protein RNA14
Gene namesi
Name:RNA14
Ordered Locus Names:YMR061W
ORF Names:YM9796.14
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
ProteomesiUP000002311: Chromosome XIII

Organism-specific databases

CYGDiYMR061w.
SGDiS000004665. RNA14.

Subcellular locationi

Nucleus. Cytoplasm
Note: Nucleus and/or cytoplasm.

GO - Cellular componenti

  1. cytosol Source: SGD
  2. mitochondrion Source: SGD
  3. mRNA cleavage factor complex Source: SGD
  4. nucleus Source: SGD
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 677677mRNA 3'-end-processing protein RNA14PRO_0000205761Add
BLAST

Proteomic databases

MaxQBiP25298.
PaxDbiP25298.
PRIDEiP25298.

Expressioni

Gene expression databases

GenevestigatoriP25298.

Interactioni

Subunit structurei

Component of the CFIA complex, which is composed of RNA14, RNA15, PCF11 and CLP1. Interacts with FIP1, PFS2, YSH1 and probably also with RNA15. Probably interacts with the phosphorylated CTD domain of RPB1/RNA polymerase II.3 Publications

Binary interactionsi

WithEntry#Exp.IntActNotes
PCF11P3908112EBI-15632,EBI-12980
RNA15P252998EBI-15632,EBI-15640

Protein-protein interaction databases

BioGridi35236. 99 interactions.
DIPiDIP-1488N.
IntActiP25298. 41 interactions.
MINTiMINT-400599.
STRINGi4932.YMR061W.

Structurei

Secondary structure

1
677
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi633 – 6419
Helixi645 – 6484
Helixi655 – 66410

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2L9BNMR-B626-677[»]
ProteinModelPortaliP25298.
SMRiP25298. Positions 30-669.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati56 – 8833HAT 1Add
BLAST
Repeati90 – 12435HAT 2Add
BLAST
Repeati138 – 17033HAT 3Add
BLAST
Repeati181 – 21434HAT 4Add
BLAST
Repeati257 – 28933HAT 5Add
BLAST
Repeati298 – 33033HAT 6Add
BLAST

Sequence similaritiesi

Contains 6 HAT repeats.

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiCOG5107.
GeneTreeiENSGT00390000006758.
HOGENOMiHOG000000753.
KOiK14408.
OMAiNNDLSLW.
OrthoDBiEOG79CZ7K.

Family and domain databases

Gene3Di1.25.40.10. 3 hits.
InterProiIPR003107. HAT.
IPR008847. Suf.
IPR011990. TPR-like_helical.
[Graphical view]
PfamiPF05843. Suf. 1 hit.
[Graphical view]
SMARTiSM00386. HAT. 8 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P25298-1 [UniParc]FASTAAdd to Basket

« Hide

MSSSTTPDLL YPSADKVAEP SDNIHGDELR LRERIKDNPT NILSYFQLIQ    50
YLETQESYAK VREVYEQFHN TFPFYSPAWT LQLKGELARD EFETVEKILA 100
QCLSGKLENN DLSLWSTYLD YIRRKNNLIT GGQEARAVIV KAFQLVMQKC 150
AIFEPKSSSF WNEYLNFLEQ WKPFNKWEEQ QRIDMLREFY KKMLCVPFDN 200
LEKMWNRYTQ WEQEINSLTA RKFIGELSAE YMKARSLYQE WLNVTNGLKR 250
ASPINLRTAN KKNIPQPGTS DSNIQQLQIW LNWIKWEREN KLMLSEDMLS 300
QRISYVYKQG IQYMIFSAEM WYDYSMYISE NSDRQNILYT ALLANPDSPS 350
LTFKLSECYE LDNDSESVSN CFDKCTQTLL SQYKKIASDV NSGEDNNTEY 400
EQELLYKQRE KLTFVFCVYM NTMKRISGLS AARTVFGKCR KLKRILTHDV 450
YVENAYLEFQ NQNDYKTAFK VLELGLKYFQ NDGVYINKYL DFLIFLNKDS 500
QIKTLFETSV EKVQDLTQLK EIYKKMISYE SKFGNLNNVY SLEKRFFERF 550
PQENLIEVFT SRYQIQNSNL IKKLELTYMY NEEEDSYFSS GNGDGHHGSY 600
NMSSSDRKRL MEETGNNGNF SNKKFKRDSE LPTEVLDLLS VIPKRQYFNT 650
NLLDAQKLVN FLNDQVEIPT VESTKSG 677
Length:677
Mass (Da):79,960
Last modified:February 1, 1996 - v2
Checksum:i102433295FE7CD63
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
M73461 Genomic DNA. Translation: AAA21300.1.
Z49703 Genomic DNA. Translation: CAA89771.1.
BK006946 Genomic DNA. Translation: DAA09959.1.
PIRiS54561.
RefSeqiNP_013777.1. NM_001182559.1.

Genome annotation databases

EnsemblFungiiYMR061W; YMR061W; YMR061W.
GeneIDi855083.
KEGGisce:YMR061W.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
M73461 Genomic DNA. Translation: AAA21300.1 .
Z49703 Genomic DNA. Translation: CAA89771.1 .
BK006946 Genomic DNA. Translation: DAA09959.1 .
PIRi S54561.
RefSeqi NP_013777.1. NM_001182559.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
2L9B NMR - B 626-677 [» ]
ProteinModelPortali P25298.
SMRi P25298. Positions 30-669.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 35236. 99 interactions.
DIPi DIP-1488N.
IntActi P25298. 41 interactions.
MINTi MINT-400599.
STRINGi 4932.YMR061W.

Proteomic databases

MaxQBi P25298.
PaxDbi P25298.
PRIDEi P25298.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblFungii YMR061W ; YMR061W ; YMR061W .
GeneIDi 855083.
KEGGi sce:YMR061W.

Organism-specific databases

CYGDi YMR061w.
SGDi S000004665. RNA14.

Phylogenomic databases

eggNOGi COG5107.
GeneTreei ENSGT00390000006758.
HOGENOMi HOG000000753.
KOi K14408.
OMAi NNDLSLW.
OrthoDBi EOG79CZ7K.

Enzyme and pathway databases

BioCyci YEAST:G3O-32764-MONOMER.

Miscellaneous databases

NextBioi 978372.
PROi P25298.

Gene expression databases

Genevestigatori P25298.

Family and domain databases

Gene3Di 1.25.40.10. 3 hits.
InterProi IPR003107. HAT.
IPR008847. Suf.
IPR011990. TPR-like_helical.
[Graphical view ]
Pfami PF05843. Suf. 1 hit.
[Graphical view ]
SMARTi SM00386. HAT. 8 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Mutations in the yeast RNA14 and RNA15 genes result in an abnormal mRNA decay rate; sequence analysis reveals an RNA-binding domain in the RNA15 protein."
    Minvielle-Sebastia L., Winsor B., Bonneaud N., Lacroute F.
    Mol. Cell. Biol. 11:3075-3087(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: ATCC 28383 / FL100 / VTT C-80102.
  2. Bonneaud N.
    Submitted (JUL-1994) to the EMBL/GenBank/DDBJ databases
    Cited for: SEQUENCE REVISION.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  4. Cited for: GENOME REANNOTATION.
    Strain: ATCC 204508 / S288c.
  5. "RNA14 and RNA15 proteins as components of a yeast pre-mRNA 3'-end processing factor."
    Minvielle-Sebastia L., Preker P.J., Keller W.
    Science 266:1702-1705(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION.
  6. "Purification of the Saccharomyces cerevisiae cleavage/polyadenylation factor I. Separation into two components that are required for both cleavage and polyadenylation of mRNA 3' ends."
    Kessler M.M., Zhao J., Moore C.L.
    J. Biol. Chem. 271:27167-27175(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: COMPOSITION OF THE CFIA COMPLEX.
  7. "The major yeast poly(A)-binding protein is associated with cleavage factor IA and functions in premessenger RNA 3'-end formation."
    Minvielle-Sebastia L., Preker P.J., Wiederkehr T., Strahm Y., Keller W.
    Proc. Natl. Acad. Sci. U.S.A. 94:7897-7902(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION IN THE CFIA COMPLEX.
  8. "The WD-repeat protein pfs2p bridges two essential factors within the yeast pre-mRNA 3'-end-processing complex."
    Ohnacker M., Barabino S.M.L., Preker P.J., Keller W.
    EMBO J. 19:37-47(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: INTERACTION WITH FIP1; PFS2 AND YSH1.
  9. "Five subunits are required for reconstitution of the cleavage and polyadenylation activities of Saccharomyces cerevisiae cleavage factor I."
    Gross S., Moore C.
    Proc. Natl. Acad. Sci. U.S.A. 98:6080-6085(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION OF THE CFIA COMPLEX.
  10. "Independent functions of yeast Pcf11p in pre-mRNA 3' end processing and in transcription termination."
    Sadowski M., Dichtl B., Huebner W., Keller W.
    EMBO J. 22:2167-2177(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: INTERACTION WITH RBP1.
  11. Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiRNA14_YEAST
AccessioniPrimary (citable) accession number: P25298
Secondary accession number(s): D6VZN5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 1, 1992
Last sequence update: February 1, 1996
Last modified: June 11, 2014
This is version 119 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 5350 molecules/cell in log phase SD medium.

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  4. Yeast chromosome XIII
    Yeast (Saccharomyces cerevisiae) chromosome XIII: entries and gene names

External Data

Dasty 3

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