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Protein

Ferric-pseudobactin 358 receptor

Gene

pupA

Organism
Pseudomonas putida (Arthrobacter siderocapsulatus)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Specific receptor for the siderophore ferric pseudobactin 358.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Receptor

Keywords - Biological processi

Ion transport, Iron transport, Transport

Keywords - Ligandi

Iron

Protein family/group databases

TCDBi1.B.14.1.14. the outer membrane receptor (omr) family.

Names & Taxonomyi

Protein namesi
Recommended name:
Ferric-pseudobactin 358 receptor
Gene namesi
Name:pupA
OrganismiPseudomonas putida (Arthrobacter siderocapsulatus)
Taxonomic identifieri303 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell outer membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 4747Sequence analysisAdd
BLAST
Chaini48 – 819772Ferric-pseudobactin 358 receptorPRO_0000034770Add
BLAST

Structurei

Secondary structure

1
819
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi56 – 583Combined sources
Helixi59 – 7012Combined sources
Beta strandi73 – 753Combined sources
Turni78 – 836Combined sources
Beta strandi91 – 933Combined sources
Helixi95 – 1039Combined sources
Beta strandi109 – 1135Combined sources
Beta strandi116 – 1205Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2A02NMR-A48-128[»]
ProteinModelPortaliP25184.
SMRiP25184. Positions 47-128.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP25184.

Family & Domainsi

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi115 – 1228TonB box
Motifi802 – 81918TonB C-terminal boxAdd
BLAST

Sequence similaritiesi

Belongs to the TonB-dependent receptor family.Curated

Keywords - Domaini

Signal, TonB box, Transmembrane, Transmembrane beta strand

Family and domain databases

Gene3Di2.170.130.10. 1 hit.
2.40.170.20. 1 hit.
InterProiIPR012910. Plug_dom.
IPR011662. Secretin/TonB_short_N.
IPR000531. TonB-dep_rcpt_b-brl.
IPR010916. TonB_box_CS.
IPR010917. TonB_rcpt_CS.
IPR010105. TonB_sidphr_rcpt.
[Graphical view]
PfamiPF07715. Plug. 1 hit.
PF07660. STN. 1 hit.
PF00593. TonB_dep_Rec. 2 hits.
[Graphical view]
SMARTiSM00965. STN. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01783. TonB-siderophor. 1 hit.
PROSITEiPS00430. TONB_DEPENDENT_REC_1. 1 hit.
PS01156. TONB_DEPENDENT_REC_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P25184-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKPLPSALN PLAKALLIRH SLRPRHALSR IGMGLALSSA LVFQVQAQEW
60 70 80 90 100
TLDIPAQSMN SALQALAKQT DTQLLYSPED IGGLRSSALK GRHDLQSSLR
110 120 130 140 150
ILLQGTGLRY QIDGNTVTVT ASAAAKDGQI ELSATNVNSA GLGETTEGTG
160 170 180 190 200
SYTTRVTSTA TKMNLSIRET PQTITVVTRQ RMDDQHLGSM NEVLTQTPGI
210 220 230 240 250
TMSQDGGERF NIYSRGSAIN IYQFDGVTTY QDNQTRNMPS TLMDVGLYDR
260 270 280 290 300
IEIVRGATGL MTGAGDPSAV VNVIRKRPTR EFKSHIQAGV GSWDYYRAEA
310 320 330 340 350
DVSGPLTDDG RVRGRFFAAK QDNHTFMDWY TQDRDVLYGV VEADVTDTTV
360 370 380 390 400
ARFGIDRQTY KVNGAPGVPI IYTNGQPTNF SRSTSSDARW GYDDYTTTNY
410 420 430 440 450
TFGLEQQLAH DWQFKLAAAY MDVDRDSFSS YYSTTTNRSY LELDGSTEIS
460 470 480 490 500
AGIVTAKQHQ KGVDATLQGP FQLLGQTHEL IVGYNYLEYE NKHRGDSGPD
510 520 530 540 550
VNINFYDWDN QTPKPGDDEI IPGIQYNISN RQSGYFVASR FNLTDDLHLI
560 570 580 590 600
LGARASNYRF DYALWRIGNE PAPYKMVERG VVTPYAGIVY DLTNEQSVYA
610 620 630 640 650
SYTDIFKPQN NVDITGKPLD PEVGKNYELG WKGEFLEGRL NANIALYMVK
660 670 680 690 700
RDNLAESTNE VVPDSGGLIA SRAVDGAETK GVDVELSGEV LPGWNVFTGY
710 720 730 740 750
SHTRTEDADG KRLTPQLPMD TFRFWNTYRL PGEWEKLTLG GGVNWNSKST
760 770 780 790 800
LNFARYNSHV TQDDYFVTSL MARYRINESL AATLNVNNIF DKKYYAGMAG
810
SYGHYGAPRN ATVTLRYDF
Length:819
Mass (Da):91,015
Last modified:May 1, 1992 - v1
Checksum:i1B36164F86207951
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X56605 Genomic DNA. Translation: CAA39942.1.
PIRiS15169.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X56605 Genomic DNA. Translation: CAA39942.1.
PIRiS15169.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2A02NMR-A48-128[»]
ProteinModelPortaliP25184.
SMRiP25184. Positions 47-128.
ModBaseiSearch...
MobiDBiSearch...

Protein family/group databases

TCDBi1.B.14.1.14. the outer membrane receptor (omr) family.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Miscellaneous databases

EvolutionaryTraceiP25184.

Family and domain databases

Gene3Di2.170.130.10. 1 hit.
2.40.170.20. 1 hit.
InterProiIPR012910. Plug_dom.
IPR011662. Secretin/TonB_short_N.
IPR000531. TonB-dep_rcpt_b-brl.
IPR010916. TonB_box_CS.
IPR010917. TonB_rcpt_CS.
IPR010105. TonB_sidphr_rcpt.
[Graphical view]
PfamiPF07715. Plug. 1 hit.
PF07660. STN. 1 hit.
PF00593. TonB_dep_Rec. 2 hits.
[Graphical view]
SMARTiSM00965. STN. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01783. TonB-siderophor. 1 hit.
PROSITEiPS00430. TONB_DEPENDENT_REC_1. 1 hit.
PS01156. TONB_DEPENDENT_REC_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiPUPA_PSEPU
AccessioniPrimary (citable) accession number: P25184
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 1, 1992
Last sequence update: May 1, 1992
Last modified: October 14, 2015
This is version 89 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.