Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Hydrophobic seed protein

Gene
N/A
Organism
Glycine max (Soybean) (Glycine hispida)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Hydrophobic seed protein
Short name:
HPS
Alternative name(s):
Allergen: Gly m 1
OrganismiGlycine max (Soybean) (Glycine hispida)
Taxonomic identifieri3847 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsFabalesFabaceaePapilionoideaePhaseoleaeGlycineSoja
ProteomesiUP000008827 Componenti: Unplaced

Pathology & Biotechi

Allergenic propertiesi

Causes an allergic reaction in human.

Keywords - Diseasei

Allergen

Protein family/group databases

Allergomei368. Gly m 1.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 8080Hydrophobic seed proteinPRO_0000153889Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi8 ↔ 431 Publication
Disulfide bondi14 ↔ 281 Publication
Disulfide bondi29 ↔ 671 Publication
Disulfide bondi45 ↔ 771 Publication

Keywords - PTMi

Disulfide bond

Expressioni

Tissue specificityi

Highly abundant in seeds.

Gene expression databases

GenevestigatoriP24337.

Structurei

Secondary structure

1
80
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi12 – 198Combined sources
Helixi25 – 339Combined sources
Helixi37 – 5014Combined sources
Helixi56 – 6611Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1HYPX-ray1.80A1-80[»]
SMRiP24337. Positions 6-80.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP24337.

Family & Domainsi

Sequence similaritiesi

Belongs to the plant LTP family. PEARLI1 subfamily.Curated

Family and domain databases

InterProiIPR016140. Bifunc_inhib/LTP/seed_store.
IPR027923. Hydrophob_seed.
[Graphical view]
PfamiPF14547. Hydrophob_seed. 1 hit.
[Graphical view]
SMARTiSM00499. AAI. 1 hit.
[Graphical view]
SUPFAMiSSF47699. SSF47699. 1 hit.

Sequencei

Sequence statusi: Complete.

P24337-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
ALITRPSCPD LSICLNILGG SLGTVDDCCA LIGGLGDIEA IVCLCIQLRA
60 70 80
LGILNLNRNL QLILNSCGRS YPSNATCPRT
Length:80
Mass (Da):8,359
Last modified:March 1, 1992 - v1
Checksum:i6BF40B553E24D636
GO

Sequence databases

PIRiA29385.

Cross-referencesi

Sequence databases

PIRiA29385.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1HYPX-ray1.80A1-80[»]
SMRiP24337. Positions 6-80.
ModBaseiSearch...
MobiDBiSearch...

Protein family/group databases

Allergomei368. Gly m 1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Miscellaneous databases

EvolutionaryTraceiP24337.

Gene expression databases

GenevestigatoriP24337.

Family and domain databases

InterProiIPR016140. Bifunc_inhib/LTP/seed_store.
IPR027923. Hydrophob_seed.
[Graphical view]
PfamiPF14547. Hydrophob_seed. 1 hit.
[Graphical view]
SMARTiSM00499. AAI. 1 hit.
[Graphical view]
SUPFAMiSSF47699. SSF47699. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Soybean hydrophobic protein. Isolation, partial characterization and the complete primary structure."
    Odani S., Koide T., Ono T., Seto Y., Tanaka T.
    Eur. J. Biochem. 162:485-491(1986) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE, DISULFIDE BONDS.
    Tissue: Seed.
  2. "Crystal structure of hydrophobic protein from soybean; a member of a new cysteine-rich family."
    Baud F., Pebay-Peyroula E., Cohen-Addad C., Odani S., Lehmann M.S.
    J. Mol. Biol. 231:877-887(1992) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.8 ANGSTROMS).

Entry informationi

Entry nameiHPSE_SOYBN
AccessioniPrimary (citable) accession number: P24337
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 1, 1992
Last sequence update: March 1, 1992
Last modified: April 1, 2015
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Allergens
    Nomenclature of allergens and list of entries
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.