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Protein

Hydrophobic seed protein

Gene
N/A
Organism
Glycine max (Soybean) (Glycine hispida)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Hydrophobic seed protein
Short name:
HPS
Alternative name(s):
Allergen: Gly m 1
OrganismiGlycine max (Soybean) (Glycine hispida)
Taxonomic identifieri3847 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsFabalesFabaceaePapilionoideaePhaseoleaeGlycineSoja
Proteomesi
  • UP000008827 Componenti: Unplaced

Pathology & Biotechi

Allergenic propertiesi

Causes an allergic reaction in human.

Keywords - Diseasei

Allergen

Protein family/group databases

Allergomei368. Gly m 1.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001538891 – 80Hydrophobic seed proteinAdd BLAST80

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Disulfide bondi8 ↔ 431 Publication
Disulfide bondi14 ↔ 281 Publication
Disulfide bondi29 ↔ 671 Publication
Disulfide bondi45 ↔ 771 Publication

Keywords - PTMi

Disulfide bond

Expressioni

Tissue specificityi

Highly abundant in seeds.

Interactioni

Protein-protein interaction databases

STRINGi3847.GLYMA15G13750.1.

Structurei

Secondary structure

180
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi12 – 19Combined sources8
Helixi25 – 33Combined sources9
Helixi37 – 50Combined sources14
Helixi56 – 66Combined sources11

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1HYPX-ray1.80A1-80[»]
ProteinModelPortaliP24337.
SMRiP24337.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP24337.

Family & Domainsi

Sequence similaritiesi

Belongs to the plant LTP family. PEARLI1 subfamily.Curated

Family and domain databases

CDDicd01958. HPS_like. 1 hit.
InterProiIPR016140. Bifunc_inhib/LTP/seed_store.
IPR027923. Hydrophob_seed.
[Graphical view]
PfamiPF14547. Hydrophob_seed. 1 hit.
[Graphical view]
SUPFAMiSSF47699. SSF47699. 1 hit.

Sequencei

Sequence statusi: Complete.

P24337-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
ALITRPSCPD LSICLNILGG SLGTVDDCCA LIGGLGDIEA IVCLCIQLRA
60 70 80
LGILNLNRNL QLILNSCGRS YPSNATCPRT
Length:80
Mass (Da):8,359
Last modified:March 1, 1992 - v1
Checksum:i6BF40B553E24D636
GO

Sequence databases

PIRiA29385.

Cross-referencesi

Sequence databases

PIRiA29385.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1HYPX-ray1.80A1-80[»]
ProteinModelPortaliP24337.
SMRiP24337.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3847.GLYMA15G13750.1.

Protein family/group databases

Allergomei368. Gly m 1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Miscellaneous databases

EvolutionaryTraceiP24337.

Family and domain databases

CDDicd01958. HPS_like. 1 hit.
InterProiIPR016140. Bifunc_inhib/LTP/seed_store.
IPR027923. Hydrophob_seed.
[Graphical view]
PfamiPF14547. Hydrophob_seed. 1 hit.
[Graphical view]
SUPFAMiSSF47699. SSF47699. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiHPSE_SOYBN
AccessioniPrimary (citable) accession number: P24337
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 1, 1992
Last sequence update: March 1, 1992
Last modified: November 2, 2016
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Allergens
    Nomenclature of allergens and list of entries
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.