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P24321

- RS17_THETH

UniProt

P24321 - RS17_THETH

Protein

30S ribosomal protein S17

Gene

rpsQ

Organism
Thermus thermophilus
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
  1. Functioni

    One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.UniRule annotation

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-HAMAP
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    30S ribosomal protein S17UniRule annotation
    Gene namesi
    Name:rpsQUniRule annotation
    Synonyms:rps17UniRule annotation
    OrganismiThermus thermophilus
    Taxonomic identifieri274 [NCBI]
    Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11RemovedBy similarity
    Chaini2 – 10510430S ribosomal protein S17PRO_0000128493Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 30S ribosomal subunit.UniRule annotation

    Protein-protein interaction databases

    STRINGi262724.TTC1319.

    Structurei

    Secondary structure

    1
    105
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi5 – 1511
    Beta strandi18 – 2811
    Turni30 – 323
    Beta strandi35 – 4511
    Beta strandi56 – 6611
    Beta strandi69 – 7810
    Helixi82 – 9312
    Helixi94 – 974
    Beta strandi98 – 1014

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1QD7X-ray5.50I6-85[»]
    1TWTmodel-T2-105[»]
    2VQEX-ray2.50Q1-105[»]
    2VQFX-ray2.90Q1-105[»]
    ProteinModelPortaliP24321.
    SMRiP24321. Positions 2-105.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiP24321.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein S17P family.UniRule annotation

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    HAMAPiMF_01345_B. Ribosomal_S17_B.
    InterProiIPR012340. NA-bd_OB-fold.
    IPR000266. Ribosomal_S17.
    IPR019984. Ribosomal_S17_bac-type.
    IPR019979. Ribosomal_S17_CS.
    [Graphical view]
    PANTHERiPTHR10744. PTHR10744. 1 hit.
    PfamiPF00366. Ribosomal_S17. 1 hit.
    [Graphical view]
    PRINTSiPR00973. RIBOSOMALS17.
    ProDomiPD001295. Ribosomal_S17. 1 hit.
    [Graphical view] [Entries sharing at least one domain]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR03635. S17_bact. 1 hit.
    PROSITEiPS00056. RIBOSOMAL_S17. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P24321-1 [UniParc]FASTAAdd to Basket

    « Hide

    MPKKVLTGVV VSDKMQKTVT VLVERQFPHP LYGKVIKRSK KYLAHDPEEK    50
    YKLGDVVEII ESRPISKRKR FRVLRLVESG RMDLVEKYLI RRQNYQSLSK 100
    RGGKA 105
    Length:105
    Mass (Da):12,297
    Last modified:January 23, 2007 - v4
    Checksum:i6089596D57478FBD
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    Z36971 Genomic DNA. Translation: CAA85419.1.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    Z36971 Genomic DNA. Translation: CAA85419.1 .

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1QD7 X-ray 5.50 I 6-85 [» ]
    1TWT model - T 2-105 [» ]
    2VQE X-ray 2.50 Q 1-105 [» ]
    2VQF X-ray 2.90 Q 1-105 [» ]
    ProteinModelPortali P24321.
    SMRi P24321. Positions 2-105.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 262724.TTC1319.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Miscellaneous databases

    EvolutionaryTracei P24321.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    HAMAPi MF_01345_B. Ribosomal_S17_B.
    InterProi IPR012340. NA-bd_OB-fold.
    IPR000266. Ribosomal_S17.
    IPR019984. Ribosomal_S17_bac-type.
    IPR019979. Ribosomal_S17_CS.
    [Graphical view ]
    PANTHERi PTHR10744. PTHR10744. 1 hit.
    Pfami PF00366. Ribosomal_S17. 1 hit.
    [Graphical view ]
    PRINTSi PR00973. RIBOSOMALS17.
    ProDomi PD001295. Ribosomal_S17. 1 hit.
    [Graphical view ] [Entries sharing at least one domain ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR03635. S17_bact. 1 hit.
    PROSITEi PS00056. RIBOSOMAL_S17. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Sequencing and analysis of the Thermus thermophilus ribosomal protein gene cluster equivalent to the spectinomycin operon."
      Vysotskaya V.S., Shcherbakov D.V., Garber M.B.
      Gene 193:23-30(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
      Strain: VK1.

    Entry informationi

    Entry nameiRS17_THETH
    AccessioniPrimary (citable) accession number: P24321
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: March 1, 1992
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 82 of the entry and version 4 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3