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Protein

UPF0176 protein YceA

Gene

yceA

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG11116-MONOMER.
ECOL316407:JW1042-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0176 protein YceA
Alternative name(s):
ORF39.9
Gene namesi
Name:yceA
Ordered Locus Names:b1055, JW1042
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11116. yceA.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 350350UPF0176 protein YceAPRO_0000161470Add
BLAST

Proteomic databases

PaxDbiP24188.

Expressioni

Inductioni

Is expressed at all temperatures, but accumulation of yceA transcripts decline with raising temperature. Thus, its expression is repressed by heat shock.

Interactioni

Protein-protein interaction databases

BioGridi4262843. 121 interactions.
DIPiDIP-11521N.
IntActiP24188. 7 interactions.
MINTiMINT-1227067.
STRINGi511145.b1055.

Structurei

3D structure databases

ProteinModelPortaliP24188.
SMRiP24188. Positions 28-256.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini146 – 24095RhodaneseAdd
BLAST

Sequence similaritiesi

Belongs to the UPF0176 family.Curated
Contains 1 rhodanese domain.Curated

Phylogenomic databases

eggNOGiENOG4105C72. Bacteria.
COG1054. LUCA.
HOGENOMiHOG000034809.
InParanoidiP24188.
KOiK07146.
OMAiCDTHVNC.
OrthoDBiEOG6ND0G7.
PhylomeDBiP24188.

Family and domain databases

Gene3Di3.40.250.10. 1 hit.
HAMAPiMF_00469. UPF0176.
InterProiIPR001763. Rhodanese-like_dom.
IPR022111. Rhodanese_C.
IPR020936. UPF0176.
[Graphical view]
PfamiPF00581. Rhodanese. 1 hit.
PF12368. Rhodanese_C. 1 hit.
[Graphical view]
SMARTiSM00450. RHOD. 1 hit.
[Graphical view]
SUPFAMiSSF52821. SSF52821. 1 hit.
PROSITEiPS50206. RHODANESE_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P24188-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPVLHNRISN DALKAKMLAE SEPRTTISFY KYFHIADPKA TRDALYQLFT
60 70 80 90 100
ALNVFGRVYL AHEGINAQIS VPASNVETFR AQLYAFDPAL EGLRLNIALD
110 120 130 140 150
DDGKSFWVLR MKVRDRIVAD GIDDPHFDAS NVGEYLQAAE VNAMLDDPDA
160 170 180 190 200
LFIDMRNHYE YEVGHFENAL EIPADTFREQ LPKAVEMMQA HKDKKIVMYC
210 220 230 240 250
TGGIRCEKAS AWMKHNGFNK VWHIEGGIIE YARKAREQGL PVRFIGKNFV
260 270 280 290 300
FDERMGERIS DEIIAHCHQC GAPCDSHTNC KNDGCHLLFI QCPVCAEKYK
310 320 330 340 350
GCCSEICCEE SALPPEEQRR RRAGRENGNK IFNKSRGRLN TTLCIPDPTE
Length:350
Mass (Da):39,781
Last modified:July 15, 1998 - v2
Checksum:i61AB5F317B0C221B
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti82 – 832QL → HV in CAA43318 (PubMed:1840644).Curated
Sequence conflicti312 – 3121A → R in CAA43318 (PubMed:1840644).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X61000 Genomic DNA. Translation: CAA43318.1.
U00096 Genomic DNA. Translation: AAC74139.1.
AP009048 Genomic DNA. Translation: BAA35853.1.
PIRiD64848.
RefSeqiNP_415573.1. NC_000913.3.
WP_001144615.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74139; AAC74139; b1055.
BAA35853; BAA35853; BAA35853.
GeneIDi945601.
KEGGiecj:JW1042.
eco:b1055.
PATRICi32117347. VBIEscCol129921_1096.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X61000 Genomic DNA. Translation: CAA43318.1.
U00096 Genomic DNA. Translation: AAC74139.1.
AP009048 Genomic DNA. Translation: BAA35853.1.
PIRiD64848.
RefSeqiNP_415573.1. NC_000913.3.
WP_001144615.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP24188.
SMRiP24188. Positions 28-256.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262843. 121 interactions.
DIPiDIP-11521N.
IntActiP24188. 7 interactions.
MINTiMINT-1227067.
STRINGi511145.b1055.

Proteomic databases

PaxDbiP24188.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74139; AAC74139; b1055.
BAA35853; BAA35853; BAA35853.
GeneIDi945601.
KEGGiecj:JW1042.
eco:b1055.
PATRICi32117347. VBIEscCol129921_1096.

Organism-specific databases

EchoBASEiEB1106.
EcoGeneiEG11116. yceA.

Phylogenomic databases

eggNOGiENOG4105C72. Bacteria.
COG1054. LUCA.
HOGENOMiHOG000034809.
InParanoidiP24188.
KOiK07146.
OMAiCDTHVNC.
OrthoDBiEOG6ND0G7.
PhylomeDBiP24188.

Enzyme and pathway databases

BioCyciEcoCyc:EG11116-MONOMER.
ECOL316407:JW1042-MONOMER.

Miscellaneous databases

PROiP24188.

Family and domain databases

Gene3Di3.40.250.10. 1 hit.
HAMAPiMF_00469. UPF0176.
InterProiIPR001763. Rhodanese-like_dom.
IPR022111. Rhodanese_C.
IPR020936. UPF0176.
[Graphical view]
PfamiPF00581. Rhodanese. 1 hit.
PF12368. Rhodanese_C. 1 hit.
[Graphical view]
SMARTiSM00450. RHOD. 1 hit.
[Graphical view]
SUPFAMiSSF52821. SSF52821. 1 hit.
PROSITEiPS50206. RHODANESE_3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequencing, mutational analysis, and transcriptional regulation of the Escherichia coli htrB gene."
    Karow M.L., Georgopoulos C.
    Mol. Microbiol. 5:2285-2292(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: K12.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYCEA_ECOLI
AccessioniPrimary (citable) accession number: P24188
Secondary accession number(s): P75924
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 1, 1992
Last sequence update: July 15, 1998
Last modified: April 13, 2016
This is version 130 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.