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P24082 (TRAN_ECOLI) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 76. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Protein TraN
Gene names
Name:traN
Ordered Locus Names:ECOK12F089
Encoded onPlasmid F
OrganismEscherichia coli (strain K12)
Taxonomic identifier83333 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia

Protein attributes

Sequence length602 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

General annotation (Comments)

Function

Essential for F plasmid conjugative transfer. May interact with the recipient cell surface to stabilize mating pairs initiated by F-pili. May interact with TraG.

Subcellular location

Cell outer membrane Ref.1.

Ontologies

Keywords
   Biological processConjugation
   Cellular componentCell outer membrane
Membrane
   DomainSignal
   Technical termPlasmid
Gene Ontology (GO)
   Biological_processconjugation

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular_componentcell outer membrane

Inferred from electronic annotation. Source: UniProtKB-SubCell

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 1818 Potential
Chain19 – 602584Protein TraN
PRO_0000024508

Sequences

Sequence LengthMass (Da)Tools
P24082 [UniParc].

Last modified February 1, 1995. Version 2.
Checksum: 78B97716681FF50E

FASTA60265,715
        10         20         30         40         50         60 
MKRILPLILA LVAGMAQADS NSDYRAGSDF AHQIKGQGSS SIQGFKPQES IPGYNANPDE 

        70         80         90        100        110        120 
TKYYGGVTAG GDGGLKNDGT TEWATGETGK TITESFMNKP KDILSPDAPF IQTGRDVVNR 

       130        140        150        160        170        180 
ADSIVGNTGQ QCSAQEISRS EYTNYTCERD LQVEQYCTRT ARMELQGSTT WETRTLEYEM 

       190        200        210        220        230        240 
SQLPAREVNG QYVVSITSPV TGEIVDAHYS WSRTYLQKSV PMTITVLGTP LSWNAKYSAD 

       250        260        270        280        290        300 
ASFTPVQKTL TAGVAFTSSH PVRVGNTKFK RHTAMKLRLV VRVKKASYTP YVVWSESCPF 

       310        320        330        340        350        360 
SKELGKLTKT ECTEAGGNRT LVKDGQSYSM YQSCWAYRDT YVTQSADKGT CQTYTDNPAC 

       370        380        390        400        410        420 
TLVSHQCAFY SEEGACLHEY ATYSCESKTS GKVMVCGGDV FCLDGECDKA QSGKSNDFAE 

       430        440        450        460        470        480 
AVSQLAALAA AGKDVAALNG VDVRAFTGQA KFCKKAAAGY SNCCKDSGWG QDIGLAKCSS 

       490        500        510        520        530        540 
DEKALAKAKS NKLTVSVGEF CSKKVLGVCL EKKRSYCQFD SKLAQIVQQQ GRNGQLRISF 

       550        560        570        580        590        600 
GSAKHPDCRG ITVDELQKIQ FNRLDFTNFY EDLMNNQKIP DSGVLTQKVK EQIADQLKQA 


GQ 

« Hide

References

« Hide 'large scale' references
[1]"Characterization of the F plasmid mating aggregation gene traN and of a new F transfer region locus trbE."
Maneewannakul S., Kathir P., Ippen-Ihler K.
J. Mol. Biol. 225:299-311(1992) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], SUBCELLULAR LOCATION.
Strain: K12.
[2]"Analysis of the sequence and gene products of the transfer region of the F sex factor."
Frost L.S., Ippen-Ihler K., Skurray R.A.
Microbiol. Rev. 58:162-210(1994) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[3]"Complete nucleotide sequence of the F plasmid: its implications for organization and diversification of plasmid genomes."
Shimizu H., Saitoh Y., Suda Y., Uehara K., Sampei G., Mizobuchi K.
Submitted (APR-2000) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / CR63.
[4]"Characterization of trbC, a new F plasmid tra operon gene that is essential to conjugative transfer."
Maneewannakul S., Maneewannakul K., Ippen-Ihler K.
J. Bacteriol. 173:3872-3878(1991) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-19.
Strain: K12.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
X61575 Genomic DNA. Translation: CAA43775.1.
U01159 Genomic DNA. Translation: AAC44192.1.
AP001918 Genomic DNA. Translation: BAA97959.1.
M60427 Genomic DNA. Translation: AAA24915.1.
PIRS23991.
RefSeqNP_061468.1. NC_002483.1.

3D structure databases

ProteinModelPortalP24082.
ModBaseSearch...
MobiDBSearch...

Proteomic databases

PRIDEP24082.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID1263575.

Phylogenomic databases

OMAQESIPGY.

Gene expression databases

GenevestigatorP24082.

Family and domain databases

InterProIPR014121. TraN_Ftype.
[Graphical view]
PfamPF06986. TraN. 1 hit.
[Graphical view]
TIGRFAMsTIGR02750. TraN_Ftype. 1 hit.
ProtoNetSearch...

Entry information

Entry nameTRAN_ECOLI
AccessionPrimary (citable) accession number: P24082
Entry history
Integrated into UniProtKB/Swiss-Prot: March 1, 1992
Last sequence update: February 1, 1995
Last modified: May 14, 2014
This is version 76 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program