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Protein

40S ribosomal protein S27-like

Gene

Rps27l

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Cofactori

Zn2+CuratedNote: Binds 1 zinc ion per subunit.Curated

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri37 – 59C4-typeSequence analysisAdd BLAST23

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S27-like
Gene namesi
Name:Rps27l
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 8

Organism-specific databases

RGDi1595396. Rps27l.

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved1 Publication
ChainiPRO_00001490562 – 8440S ribosomal protein S27-likeAdd BLAST83

Proteomic databases

PaxDbiP24051.
PeptideAtlasiP24051.
PRIDEiP24051.

PTM databases

iPTMnetiP24051.
PhosphoSitePlusiP24051.

Expressioni

Tissue specificityi

Expressed predominantly in the striatum, hypothalamus, heart and liver and at lower levels in the cerebellum, hippocampus and pons.1 Publication

Gene expression databases

BgeeiENSRNOG00000050473.

Interactioni

Protein-protein interaction databases

MINTiMINT-4564400.
STRINGi10116.ENSRNOP00000067129.

Structurei

3D structure databases

ProteinModelPortaliP24051.
SMRiP24051.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri37 – 59C4-typeSequence analysisAdd BLAST23

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiKOG1779. Eukaryota.
COG2051. LUCA.
GeneTreeiENSGT00390000013514.
HOVERGENiHBG000252.
InParanoidiP24051.
KOiK02978.
OMAiCASVLCQ.
OrthoDBiEOG091G157G.

Family and domain databases

Gene3Di2.20.25.100. 1 hit.
HAMAPiMF_00371. Ribosomal_S27e. 1 hit.
InterProiView protein in InterPro
IPR000592. Ribosomal_S27e.
IPR023407. Ribosomal_S27e_Zn-bd_dom.
IPR011332. Ribosomal_zn-bd.
PANTHERiPTHR11594. PTHR11594. 1 hit.
PfamiView protein in Pfam
PF01667. Ribosomal_S27e. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD004466. Ribosomal_S27e. 1 hit.
SUPFAMiSSF57829. SSF57829. 1 hit.
PROSITEiView protein in PROSITE
PS01168. RIBOSOMAL_S27E. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P24051-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPLARDLLHP SLEEEKKKHK KKRLVQSPNS YFMDVKCPGC YKITTVFSHA
60 70 80
QTVVLCVGCS TVLCQPTGGK ARLTEGCSFR RKQH
Length:84
Mass (Da):9,477
Last modified:January 23, 2007 - v3
Checksum:i271CCACFBB269E38
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X59375 mRNA. Translation: CAA42019.1.
PIRiS30297. R3RT27.
RefSeqiNP_001263406.1. NM_001276477.1.
UniGeneiRn.34330.

Genome annotation databases

EnsembliENSRNOT00000072573; ENSRNOP00000067129; ENSRNOG00000050473.
ENSRNOT00000090977; ENSRNOP00000071243; ENSRNOG00000050473.
GeneIDi681429.
KEGGirno:681429.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRS27L_RAT
AccessioniPrimary (citable) accession number: P24051
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 1, 1992
Last sequence update: January 23, 2007
Last modified: June 7, 2017
This is version 117 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families