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Protein

40S ribosomal protein S27-like

Gene

Rps27l

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Cofactori

Zn2+CuratedNote: Binds 1 zinc ion per subunit.Curated

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri37 – 5923C4-typeSequence analysisAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S27-like
Gene namesi
Name:Rps27l
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 8

Organism-specific databases

RGDi1595396. Rps27l.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methionineiRemoved1 Publication
Chaini2 – 848340S ribosomal protein S27-likePRO_0000149056Add
BLAST

Proteomic databases

PaxDbiP24051.
PRIDEiP24051.

Expressioni

Tissue specificityi

Expressed predominantly in the striatum, hypothalamus, heart and liver and at lower levels in the cerebellum, hippocampus and pons.1 Publication

Interactioni

Protein-protein interaction databases

MINTiMINT-4564400.
STRINGi10116.ENSRNOP00000067129.

Structurei

3D structure databases

ProteinModelPortaliP24051.
SMRiP24051. Positions 2-83.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S27e family.Curated

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri37 – 5923C4-typeSequence analysisAdd
BLAST

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiKOG1779. Eukaryota.
COG2051. LUCA.
GeneTreeiENSGT00390000013514.
HOVERGENiHBG000252.
InParanoidiP24051.
KOiK02978.
OMAiMPLARDF.
OrthoDBiEOG78SQM9.

Family and domain databases

Gene3Di2.20.25.100. 1 hit.
HAMAPiMF_00371. Ribosomal_S27e.
InterProiIPR000592. Ribosomal_S27e.
IPR023407. Ribosomal_S27e_Zn-bd_dom.
IPR011332. Ribosomal_zn-bd.
[Graphical view]
PANTHERiPTHR11594. PTHR11594. 1 hit.
PfamiPF01667. Ribosomal_S27e. 1 hit.
[Graphical view]
ProDomiPD004466. Ribosomal_S27e. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF57829. SSF57829. 1 hit.
PROSITEiPS01168. RIBOSOMAL_S27E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P24051-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPLARDLLHP SLEEEKKKHK KKRLVQSPNS YFMDVKCPGC YKITTVFSHA
60 70 80
QTVVLCVGCS TVLCQPTGGK ARLTEGCSFR RKQH
Length:84
Mass (Da):9,477
Last modified:January 23, 2007 - v3
Checksum:i271CCACFBB269E38
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X59375 mRNA. Translation: CAA42019.1.
PIRiS30297. R3RT27.
RefSeqiNP_001263406.1. NM_001276477.1.
UniGeneiRn.34330.

Genome annotation databases

EnsembliENSRNOT00000072573; ENSRNOP00000067129; ENSRNOG00000050473.
ENSRNOT00000090977; ENSRNOP00000071243; ENSRNOG00000050473.
GeneIDi681429.
KEGGirno:681429.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X59375 mRNA. Translation: CAA42019.1.
PIRiS30297. R3RT27.
RefSeqiNP_001263406.1. NM_001276477.1.
UniGeneiRn.34330.

3D structure databases

ProteinModelPortaliP24051.
SMRiP24051. Positions 2-83.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

MINTiMINT-4564400.
STRINGi10116.ENSRNOP00000067129.

Proteomic databases

PaxDbiP24051.
PRIDEiP24051.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000072573; ENSRNOP00000067129; ENSRNOG00000050473.
ENSRNOT00000090977; ENSRNOP00000071243; ENSRNOG00000050473.
GeneIDi681429.
KEGGirno:681429.

Organism-specific databases

CTDi51065.
RGDi1595396. Rps27l.

Phylogenomic databases

eggNOGiKOG1779. Eukaryota.
COG2051. LUCA.
GeneTreeiENSGT00390000013514.
HOVERGENiHBG000252.
InParanoidiP24051.
KOiK02978.
OMAiMPLARDF.
OrthoDBiEOG78SQM9.

Miscellaneous databases

NextBioi720917.
PROiP24051.

Family and domain databases

Gene3Di2.20.25.100. 1 hit.
HAMAPiMF_00371. Ribosomal_S27e.
InterProiIPR000592. Ribosomal_S27e.
IPR023407. Ribosomal_S27e_Zn-bd_dom.
IPR011332. Ribosomal_zn-bd.
[Graphical view]
PANTHERiPTHR11594. PTHR11594. 1 hit.
PfamiPF01667. Ribosomal_S27e. 1 hit.
[Graphical view]
ProDomiPD004466. Ribosomal_S27e. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF57829. SSF57829. 1 hit.
PROSITEiPS01168. RIBOSOMAL_S27E. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Zinc finger-like motifs in rat ribosomal proteins S27 and S29."
    Chan Y.-L., Suzuki K., Olvera J., Wool I.G.
    Nucleic Acids Res. 21:649-655(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], PROTEIN SEQUENCE OF 2-34.
    Strain: Sprague-Dawley.
    Tissue: Liver.
  2. "Evolutionarily distinct classes of S27 ribosomal proteins with differential mRNA expression in rat hypothalamus."
    Thomas E.A., Alvarez C.E., Sutcliffe J.G.
    J. Neurochem. 74:2259-2267(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: TISSUE SPECIFICITY.

Entry informationi

Entry nameiRS27L_RAT
AccessioniPrimary (citable) accession number: P24051
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 1, 1992
Last sequence update: January 23, 2007
Last modified: May 11, 2016
This is version 107 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.