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P23828 (RS17_GEOSE) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 78. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
30S ribosomal protein S17
Alternative name(s):
BS16
Gene names
Name:rpsQ
OrganismGeobacillus stearothermophilus (Bacillus stearothermophilus)
Taxonomic identifier1422 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacilliBacillalesBacillaceaeGeobacillus

Protein attributes

Sequence length87 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. HAMAP-Rule MF_01345

Subunit structure

Part of the 30S ribosomal subunit.

Sequence similarities

Belongs to the ribosomal protein S17P family.

Ontologies

Keywords
   LigandRNA-binding
rRNA-binding
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical term3D-structure
Direct protein sequencing
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionrRNA binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Initiator methionine11Removed Ref.1 Ref.2
Chain2 – 878630S ribosomal protein S17 HAMAP-Rule MF_01345
PRO_0000128446

Natural variations

Natural variant31E → Q in strain: 10.
Natural variant161S → G in strain: 10.

Secondary structure

........... 87
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P23828 [UniParc].

Last modified January 23, 2007. Version 2.
Checksum: 4E2F2262359BA5E4

FASTA8710,205
        10         20         30         40         50         60 
MSERNQRKVY VGRVVSDKMD KTITVLVETY KKHPLYGKRV KYSKKYKAHD EHNEAKVGDI 

        70         80 
VKIMETRPLS ATKRFRLVEI VEKAVVL 

« Hide

References

[1]"The amino-acid sequences of the Bacillus stearothermophilus ribosomal proteins S17 and S21 and their comparison to homologous proteins of other ribosomes."
Herfurth E., Hirano H., Wittmann-Liebold B.
Biol. Chem. Hoppe-Seyler 372:955-961(1991) [PubMed] [Europe PMC] [Abstract]
Cited for: PROTEIN SEQUENCE OF 2-87.
Strain: 799.
[2]"Procaryotic ribosomal proteins: N-terminal sequence homologies and structural correspondence of 30 S ribosomal proteins from Escherichia coli and Bacillus stearothermophilus."
Yaguchi M., Matheson A.T., Visentin L.P.
FEBS Lett. 46:296-300(1974) [PubMed] [Europe PMC] [Abstract]
Cited for: PROTEIN SEQUENCE OF 2-16.
Strain: DSM 13240 / CIP 106956 / 10.
[3]"Protein-rRNA binding features and their structural and functional implications in ribosomes as determined by cross-linking studies."
Urlaub H., Kruft V., Bischof O., Mueller E.-C., Wittmann-Liebold B.
EMBO J. 14:4578-4588(1995) [PubMed] [Europe PMC] [Abstract]
Cited for: PROTEIN SEQUENCE OF 22-38, CROSS-LINKING TO RRNA.
Strain: 799.
[4]"Ribosomal protein S17: characterization of the three-dimensional structure by 1H and 15N NMR."
Golden B.L., Hoffman D.W., Ramakrishnan V., White S.W.
Biochemistry 32:12812-12820(1993) [PubMed] [Europe PMC] [Abstract]
Cited for: STRUCTURE BY NMR.
[5]"Solution structure of prokaryotic ribosomal protein S17 by high-resolution NMR spectroscopy."
Jaishree T.N., Ramakrishnan V., White S.W.
Biochemistry 35:2845-2853(1996) [PubMed] [Europe PMC] [Abstract]
Cited for: STRUCTURE BY NMR.

Cross-references

Sequence databases

PIRS17865.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1RIPNMR-A6-85[»]
ProteinModelPortalP23828.
SMRP23828. Positions 6-85.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

Gene3D2.40.50.140. 1 hit.
HAMAPMF_01345_B. Ribosomal_S17_B.
InterProIPR012340. NA-bd_OB-fold.
IPR000266. Ribosomal_S17.
IPR019984. Ribosomal_S17_bac-type.
IPR019979. Ribosomal_S17_CS.
[Graphical view]
PANTHERPTHR10744. PTHR10744. 1 hit.
PfamPF00366. Ribosomal_S17. 1 hit.
[Graphical view]
PRINTSPR00973. RIBOSOMALS17.
ProDomPD001295. Ribosomal_S17. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR03635. S17_bact. 1 hit.
PROSITEPS00056. RIBOSOMAL_S17. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceP23828.

Entry information

Entry nameRS17_GEOSE
AccessionPrimary (citable) accession number: P23828
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1991
Last sequence update: January 23, 2007
Last modified: February 19, 2014
This is version 78 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references