ID NFYA_HUMAN Reviewed; 347 AA. AC P23511; Q8IXU0; DT 01-NOV-1991, integrated into UniProtKB/Swiss-Prot. DT 01-MAY-1992, sequence version 2. DT 24-JAN-2024, entry version 207. DE RecName: Full=Nuclear transcription factor Y subunit alpha; DE AltName: Full=CAAT box DNA-binding protein subunit A; DE AltName: Full=Nuclear transcription factor Y subunit A; DE Short=NF-YA; GN Name=NFYA; OS Homo sapiens (Human). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. OX NCBI_TaxID=9606; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA]. RX PubMed=1549471; DOI=10.1093/nar/20.5.1087; RA Li X.-Y., Mantovani R., Hooft van Huijsduijnen R., Andre I., Benoist C., RA Mathis D.; RT "Evolutionary variation of the CCAAT-binding transcription factor NF-Y."; RL Nucleic Acids Res. 20:1087-1091(1992). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=14574404; DOI=10.1038/nature02055; RA Mungall A.J., Palmer S.A., Sims S.K., Edwards C.A., Ashurst J.L., RA Wilming L., Jones M.C., Horton R., Hunt S.E., Scott C.E., Gilbert J.G.R., RA Clamp M.E., Bethel G., Milne S., Ainscough R., Almeida J.P., Ambrose K.D., RA Andrews T.D., Ashwell R.I.S., Babbage A.K., Bagguley C.L., Bailey J., RA Banerjee R., Barker D.J., Barlow K.F., Bates K., Beare D.M., Beasley H., RA Beasley O., Bird C.P., Blakey S.E., Bray-Allen S., Brook J., Brown A.J., RA Brown J.Y., Burford D.C., Burrill W., Burton J., Carder C., Carter N.P., RA Chapman J.C., Clark S.Y., Clark G., Clee C.M., Clegg S., Cobley V., RA Collier R.E., Collins J.E., Colman L.K., Corby N.R., Coville G.J., RA Culley K.M., Dhami P., Davies J., Dunn M., Earthrowl M.E., Ellington A.E., RA Evans K.A., Faulkner L., Francis M.D., Frankish A., Frankland J., RA French L., Garner P., Garnett J., Ghori M.J., Gilby L.M., Gillson C.J., RA Glithero R.J., Grafham D.V., Grant M., Gribble S., Griffiths C., RA Griffiths M.N.D., Hall R., Halls K.S., Hammond S., Harley J.L., Hart E.A., RA Heath P.D., Heathcott R., Holmes S.J., Howden P.J., Howe K.L., Howell G.R., RA Huckle E., Humphray S.J., Humphries M.D., Hunt A.R., Johnson C.M., RA Joy A.A., Kay M., Keenan S.J., Kimberley A.M., King A., Laird G.K., RA Langford C., Lawlor S., Leongamornlert D.A., Leversha M., Lloyd C.R., RA Lloyd D.M., Loveland J.E., Lovell J., Martin S., Mashreghi-Mohammadi M., RA Maslen G.L., Matthews L., McCann O.T., McLaren S.J., McLay K., McMurray A., RA Moore M.J.F., Mullikin J.C., Niblett D., Nickerson T., Novik K.L., RA Oliver K., Overton-Larty E.K., Parker A., Patel R., Pearce A.V., Peck A.I., RA Phillimore B.J.C.T., Phillips S., Plumb R.W., Porter K.M., Ramsey Y., RA Ranby S.A., Rice C.M., Ross M.T., Searle S.M., Sehra H.K., Sheridan E., RA Skuce C.D., Smith S., Smith M., Spraggon L., Squares S.L., Steward C.A., RA Sycamore N., Tamlyn-Hall G., Tester J., Theaker A.J., Thomas D.W., RA Thorpe A., Tracey A., Tromans A., Tubby B., Wall M., Wallis J.M., RA West A.P., White S.S., Whitehead S.L., Whittaker H., Wild A., Willey D.J., RA Wilmer T.E., Wood J.M., Wray P.W., Wyatt J.C., Young L., Younger R.M., RA Bentley D.R., Coulson A., Durbin R.M., Hubbard T., Sulston J.E., Dunham I., RA Rogers J., Beck S.; RT "The DNA sequence and analysis of human chromosome 6."; RL Nature 425:805-811(2003). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM SHORT). RC TISSUE=Testis; RX PubMed=15489334; DOI=10.1101/gr.2596504; RG The MGC Project Team; RT "The status, quality, and expansion of the NIH full-length cDNA project: RT the Mammalian Gene Collection (MGC)."; RL Genome Res. 14:2121-2127(2004). RN [4] RP NUCLEOTIDE SEQUENCE [MRNA] OF 91-347. RX PubMed=2000400; DOI=10.1073/pnas.88.5.1968; RA Becker D.M., Fikes J.D., Guarente L.; RT "A cDNA encoding a human CCAAT-binding protein cloned by functional RT complementation in yeast."; RL Proc. Natl. Acad. Sci. U.S.A. 88:1968-1972(1991). RN [5] RP INTERACTION WITH ZHX1. RX PubMed=10441475; DOI=10.1006/bbrc.1999.1087; RA Yamada K., Printz R.L., Osawa H., Granner D.K.; RT "Human ZHX1: cloning, chromosomal location, and interaction with RT transcription factor NF-Y."; RL Biochem. Biophys. Res. Commun. 261:614-621(1999). RN [6] RP INTERACTION WITH ZHX1. RX PubMed=10571058; DOI=10.1016/s0014-5793(99)01311-3; RA Yamada K., Osawa H., Granner D.K.; RT "Identification of proteins that interact with NF-YA."; RL FEBS Lett. 460:41-45(1999). RN [7] RP INTERACTION WITH ZFX3. RC TISSUE=Testis; RX PubMed=12659632; DOI=10.1042/bj20021866; RA Yamada K., Kawata H., Shou Z., Hirano S., Mizutani T., Yazawa T., RA Sekiguchi T., Yoshino M., Kajitani T., Miyamoto K.; RT "Analysis of zinc-fingers and homeoboxes (ZHX)-1-interacting proteins: RT molecular cloning and characterization of a member of the ZHX family, RT ZHX3."; RL Biochem. J. 373:167-178(2003). RN [8] RP FUNCTION, AND INTERACTION WITH ZHX2. RC TISSUE=Testis; RX PubMed=12741956; DOI=10.1042/bj20030171; RA Kawata H., Yamada K., Shou Z., Mizutani T., Yazawa T., Yoshino M., RA Sekiguchi T., Kajitani T., Miyamoto K.; RT "Zinc-fingers and homeoboxes (ZHX) 2, a novel member of the ZHX family, RT functions as a transcriptional repressor."; RL Biochem. J. 373:747-757(2003). RN [9] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-326, AND IDENTIFICATION BY RP MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Cervix carcinoma; RX PubMed=18669648; DOI=10.1073/pnas.0805139105; RA Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., RA Elledge S.J., Gygi S.P.; RT "A quantitative atlas of mitotic phosphorylation."; RL Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008). RN [10] RP INTERACTION WITH SP1. RX PubMed=19302979; DOI=10.1016/j.bbrc.2009.03.075; RA Lim K., Chang H.I.; RT "O-GlcNAcylation of Sp1 interrupts Sp1 interaction with NF-Y."; RL Biochem. Biophys. Res. Commun. 382:593-597(2009). RN [11] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-326, AND IDENTIFICATION BY RP MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Cervix carcinoma, and Erythroleukemia; RX PubMed=23186163; DOI=10.1021/pr300630k; RA Zhou H., Di Palma S., Preisinger C., Peng M., Polat A.N., Heck A.J., RA Mohammed S.; RT "Toward a comprehensive characterization of a human cancer cell RT phosphoproteome."; RL J. Proteome Res. 12:260-271(2013). RN [12] RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Liver; RX PubMed=24275569; DOI=10.1016/j.jprot.2013.11.014; RA Bian Y., Song C., Cheng K., Dong M., Wang F., Huang J., Sun D., Wang L., RA Ye M., Zou H.; RT "An enzyme assisted RP-RPLC approach for in-depth analysis of human liver RT phosphoproteome."; RL J. Proteomics 96:253-262(2014). RN [13] RP X-RAY CRYSTALLOGRAPHY (3.08 ANGSTROMS) OF 262-332 IN COMPLEX WITH NYFB; RP NYFC AND PROMOTER DNA, AND SUBUNIT. RX PubMed=23332751; DOI=10.1016/j.cell.2012.11.047; RA Nardini M., Gnesutta N., Donati G., Gatta R., Forni C., Fossati A., RA Vonrhein C., Moras D., Romier C., Bolognesi M., Mantovani R.; RT "Sequence-specific transcription factor NF-Y displays histone-like DNA RT binding and H2B-like ubiquitination."; RL Cell 152:132-143(2013). CC -!- FUNCTION: Component of the sequence-specific heterotrimeric CC transcription factor (NF-Y) which specifically recognizes a 5'-CCAAT-3' CC box motif found in the promoters of its target genes. NF-Y can function CC as both an activator and a repressor, depending on its interacting CC cofactors. NF-YA positively regulates the transcription of the core CC clock component BMAL1. {ECO:0000269|PubMed:12741956}. CC -!- SUBUNIT: Heterotrimeric transcription factor composed of three CC components, NF-YA, NF-YB and NF-YC. NF-YB and NF-YC must interact and CC dimerize for NF-YA association and DNA binding. Interacts with SP1; the CC interaction is inhibited by glycosylation of SP1. Interacts with ZHX1. CC Interacts (via N-terminus) with ZHX2 (via homeobox domain). Interacts CC with ZFX3. {ECO:0000269|PubMed:10441475, ECO:0000269|PubMed:10571058, CC ECO:0000269|PubMed:12659632, ECO:0000269|PubMed:12741956, CC ECO:0000269|PubMed:19302979, ECO:0000269|PubMed:23332751}. CC -!- INTERACTION: CC P23511; Q92624: APPBP2; NbExp=3; IntAct=EBI-389739, EBI-743771; CC P23511; P68400: CSNK2A1; NbExp=4; IntAct=EBI-389739, EBI-347804; CC P23511; P52655: GTF2A1; NbExp=3; IntAct=EBI-389739, EBI-389518; CC P23511; Q9Y383: LUC7L2; NbExp=4; IntAct=EBI-389739, EBI-352851; CC P23511; P25208: NFYB; NbExp=8; IntAct=EBI-389739, EBI-389728; CC P23511; Q13952: NFYC; NbExp=6; IntAct=EBI-389739, EBI-389755; CC P23511; Q7Z3K3: POGZ; NbExp=3; IntAct=EBI-389739, EBI-1389308; CC P23511; Q07955: SRSF1; NbExp=5; IntAct=EBI-389739, EBI-398920; CC P23511; P04637: TP53; NbExp=11; IntAct=EBI-389739, EBI-366083; CC P23511-2; P54253: ATXN1; NbExp=3; IntAct=EBI-11061759, EBI-930964; CC P23511-2; Q8N9N5-2: BANP; NbExp=3; IntAct=EBI-11061759, EBI-11524452; CC P23511-2; P68400: CSNK2A1; NbExp=3; IntAct=EBI-11061759, EBI-347804; CC P23511-2; Q92997: DVL3; NbExp=3; IntAct=EBI-11061759, EBI-739789; CC P23511-2; P52655: GTF2A1; NbExp=3; IntAct=EBI-11061759, EBI-389518; CC P23511-2; Q9Y383: LUC7L2; NbExp=3; IntAct=EBI-11061759, EBI-352851; CC P23511-2; P25208: NFYB; NbExp=6; IntAct=EBI-11061759, EBI-389728; CC P23511-2; Q13952-2: NFYC; NbExp=4; IntAct=EBI-11061759, EBI-11956831; CC P23511-2; Q7Z3K3: POGZ; NbExp=3; IntAct=EBI-11061759, EBI-1389308; CC P23511-2; P14859-6: POU2F1; NbExp=5; IntAct=EBI-11061759, EBI-11526590; CC P23511-2; Q2TAL8: QRICH1; NbExp=3; IntAct=EBI-11061759, EBI-2798044; CC P23511-2; Q9Y4C2-2: TCAF1; NbExp=3; IntAct=EBI-11061759, EBI-11974855; CC P23511-2; Q9BZL1: UBL5; NbExp=3; IntAct=EBI-11061759, EBI-607755; CC P23511-2; Q14119: VEZF1; NbExp=3; IntAct=EBI-11061759, EBI-11980193; CC P23511-2; Q96K80: ZC3H10; NbExp=3; IntAct=EBI-11061759, EBI-742550; CC -!- SUBCELLULAR LOCATION: Nucleus. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=2; CC Name=Long; CC IsoId=P23511-1; Sequence=Displayed; CC Name=Short; CC IsoId=P23511-2; Sequence=VSP_000849; CC -!- SIMILARITY: Belongs to the NFYA/HAP2 subunit family. CC {ECO:0000255|PROSITE-ProRule:PRU00966}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; X59711; CAA42231.1; -; mRNA. DR EMBL; AL031778; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; BC039244; AAH39244.1; -; mRNA. DR EMBL; M59079; AAA35950.1; -; mRNA. DR CCDS; CCDS4849.1; -. [P23511-1] DR CCDS; CCDS4850.1; -. [P23511-2] DR PIR; S22816; A39123. DR RefSeq; NP_002496.1; NM_002505.4. [P23511-1] DR RefSeq; NP_068351.1; NM_021705.3. [P23511-2] DR PDB; 4AWL; X-ray; 3.08 A; A=262-332. DR PDB; 6QMP; X-ray; 2.00 A; A=267-295. DR PDB; 6QMQ; X-ray; 2.50 A; A=267-285. DR PDB; 6QMS; X-ray; 1.80 A; A=267-285. DR PDBsum; 4AWL; -. DR PDBsum; 6QMP; -. DR PDBsum; 6QMQ; -. DR PDBsum; 6QMS; -. DR AlphaFoldDB; P23511; -. DR SASBDB; P23511; -. DR SMR; P23511; -. DR BioGRID; 110866; 99. DR ComplexPortal; CPX-1956; CCAAT-binding factor complex. DR CORUM; P23511; -. DR IntAct; P23511; 40. DR MINT; P23511; -. DR STRING; 9606.ENSP00000345702; -. DR GlyCosmos; P23511; 4 sites, 2 glycans. DR GlyGen; P23511; 6 sites, 2 O-linked glycans (6 sites). DR iPTMnet; P23511; -. DR PhosphoSitePlus; P23511; -. DR BioMuta; NFYA; -. DR DMDM; 115844; -. DR EPD; P23511; -. DR jPOST; P23511; -. DR MassIVE; P23511; -. DR MaxQB; P23511; -. DR PaxDb; 9606-ENSP00000345702; -. DR PeptideAtlas; P23511; -. DR ProteomicsDB; 54123; -. [P23511-1] DR ProteomicsDB; 54124; -. [P23511-2] DR Pumba; P23511; -. DR Antibodypedia; 3982; 267 antibodies from 35 providers. DR DNASU; 4800; -. DR Ensembl; ENST00000341376.11; ENSP00000345702.6; ENSG00000001167.15. [P23511-1] DR Ensembl; ENST00000353205.5; ENSP00000229418.6; ENSG00000001167.15. [P23511-2] DR GeneID; 4800; -. DR KEGG; hsa:4800; -. DR MANE-Select; ENST00000341376.11; ENSP00000345702.6; NM_002505.5; NP_002496.1. DR UCSC; uc003opo.4; human. [P23511-1] DR AGR; HGNC:7804; -. DR CTD; 4800; -. DR DisGeNET; 4800; -. DR GeneCards; NFYA; -. DR HGNC; HGNC:7804; NFYA. DR HPA; ENSG00000001167; Low tissue specificity. DR MIM; 189903; gene. DR neXtProt; NX_P23511; -. DR OpenTargets; ENSG00000001167; -. DR PharmGKB; PA31609; -. DR VEuPathDB; HostDB:ENSG00000001167; -. DR eggNOG; KOG1561; Eukaryota. DR GeneTree; ENSGT00390000015714; -. DR HOGENOM; CLU_071609_1_0_1; -. DR InParanoid; P23511; -. DR OMA; VAHMIRV; -. DR OrthoDB; 5490901at2759; -. DR PhylomeDB; P23511; -. DR TreeFam; TF323257; -. DR PathwayCommons; P23511; -. DR Reactome; R-HSA-1989781; PPARA activates gene expression. DR Reactome; R-HSA-2426168; Activation of gene expression by SREBF (SREBP). DR Reactome; R-HSA-380994; ATF4 activates genes in response to endoplasmic reticulum stress. DR Reactome; R-HSA-381183; ATF6 (ATF6-alpha) activates chaperone genes. DR Reactome; R-HSA-9614657; FOXO-mediated transcription of cell death genes. DR SignaLink; P23511; -. DR SIGNOR; P23511; -. DR BioGRID-ORCS; 4800; 184 hits in 1179 CRISPR screens. DR ChiTaRS; NFYA; human. DR GeneWiki; NFYA; -. DR GenomeRNAi; 4800; -. DR Pharos; P23511; Tbio. DR PRO; PR:P23511; -. DR Proteomes; UP000005640; Chromosome 6. DR RNAct; P23511; Protein. DR Bgee; ENSG00000001167; Expressed in cortical plate and 186 other cell types or tissues. DR ExpressionAtlas; P23511; baseline and differential. DR GO; GO:0016602; C:CCAAT-binding factor complex; IDA:UniProtKB. DR GO; GO:0000785; C:chromatin; ISA:NTNU_SB. DR GO; GO:0005654; C:nucleoplasm; IDA:HPA. DR GO; GO:0005634; C:nucleus; IDA:UniProtKB. DR GO; GO:0032993; C:protein-DNA complex; IDA:ParkinsonsUK-UCL. DR GO; GO:0090575; C:RNA polymerase II transcription regulator complex; IDA:NTNU_SB. DR GO; GO:0003677; F:DNA binding; IDA:UniProtKB. DR GO; GO:0003700; F:DNA-binding transcription factor activity; TAS:ProtInc. DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; ISA:NTNU_SB. DR GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; ISS:UniProtKB. DR GO; GO:0045893; P:positive regulation of DNA-templated transcription; ISS:UniProtKB. DR GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IDA:ComplexPortal. DR GO; GO:0006355; P:regulation of DNA-templated transcription; IDA:UniProtKB. DR GO; GO:0035065; P:regulation of histone acetylation; IDA:ComplexPortal. DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central. DR GO; GO:0048511; P:rhythmic process; IEA:UniProtKB-KW. DR GO; GO:0006366; P:transcription by RNA polymerase II; TAS:ProtInc. DR Gene3D; 6.10.250.2430; -; 1. DR InterPro; IPR018362; CCAAT-binding_factor_CS. DR InterPro; IPR001289; NFYA. DR PANTHER; PTHR12632:SF6; NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA; 1. DR PANTHER; PTHR12632; TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED; 1. DR Pfam; PF02045; CBFB_NFYA; 1. DR PRINTS; PR00616; CCAATSUBUNTB. DR SMART; SM00521; CBF; 1. DR PROSITE; PS00686; NFYA_HAP2_1; 1. DR PROSITE; PS51152; NFYA_HAP2_2; 1. DR Genevisible; P23511; HS. PE 1: Evidence at protein level; KW 3D-structure; Activator; Alternative splicing; Biological rhythms; KW DNA-binding; Nucleus; Phosphoprotein; Reference proteome; Transcription; KW Transcription regulation. FT CHAIN 1..347 FT /note="Nuclear transcription factor Y subunit alpha" FT /id="PRO_0000198768" FT DNA_BIND 296..321 FT /note="NFYA/HAP2-type" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00966" FT REGION 299..347 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT MOTIF 266..289 FT /note="Subunit association domain (SAD)" FT COMPBIAS 312..332 FT /note="Basic and acidic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT MOD_RES 326 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:18669648, FT ECO:0007744|PubMed:23186163" FT VAR_SEQ 26..54 FT /note="Missing (in isoform Short)" FT /evidence="ECO:0000303|PubMed:15489334" FT /id="VSP_000849" FT CONFLICT 273 FT /note="H -> N (in Ref. 3; AAH39244)" FT /evidence="ECO:0000305" FT STRAND 264..267 FT /evidence="ECO:0007829|PDB:4AWL" FT TURN 269..271 FT /evidence="ECO:0007829|PDB:6QMS" FT HELIX 275..278 FT /evidence="ECO:0007829|PDB:6QMS" FT HELIX 301..309 FT /evidence="ECO:0007829|PDB:4AWL" FT HELIX 314..316 FT /evidence="ECO:0007829|PDB:4AWL" SQ SEQUENCE 347 AA; 36877 MW; D00BE17041EB1A9E CRC64; MEQYTANSNS STEQIVVQAG QIQQQQQGGV TAVQLQTEAQ VASASGQQVQ TLQVVQGQPL MVQVSGGQLI TSTGQPIMVQ AVPGGQGQTI MQVPVSGTQG LQQIQLVPPG QIQIQGGQAV QVQGQQGQTQ QIIIQQPQTA VTAGQTQTQQ QIAVQGQQVA QTAEGQTIVY QPVNADGTIL QQVTVPVSGM ITIPAASLAG AQIVQTGANT NTTSSGQGTV TVTLPVAGNV VNSGGMVMMV PGAGSVPAIQ RIPLPGAEML EEEPLYVNAK QYHRILKRRQ ARAKLEAEGK IPKERRKYLH ESRHRHAMAR KRGEGGRFFS PKEKDSPHMQ DPNQADEEAM TQIIRVS //