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P23371

- PAP1_VACCW

UniProt

P23371 - PAP1_VACCW

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Protein

Poly(A) polymerase catalytic subunit

Gene

PAPL

Organism
Vaccinia virus (strain Western Reserve) (VACV) (Vaccinia virus (strain WR))
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli

Functioni

Polymerase that creates the 3'-poly(A) tail of mRNA's.1 Publication

Catalytic activityi

ATP + RNA(n) = diphosphate + RNA(n+1).

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei202 – 2021By similarity
Active sitei204 – 2041By similarity

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. polynucleotide adenylyltransferase activity Source: UniProtKB-EC

GO - Biological processi

  1. mRNA processing Source: UniProtKB-KW
  2. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Transferase

Keywords - Biological processi

mRNA processing, Transcription

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Poly(A) polymerase catalytic subunit (EC:2.7.7.19)
Alternative name(s):
Poly(A) polymerase large subunit
Short name:
PAP-L
VP55
Gene namesi
Name:PAPL
Ordered Locus Names:VACWR057
ORF Names:E1L
OrganismiVaccinia virus (strain Western Reserve) (VACV) (Vaccinia virus (strain WR))
Taxonomic identifieri10254 [NCBI]
Taxonomic lineageiVirusesdsDNA viruses, no RNA stagePoxviridaeChordopoxvirinaeOrthopoxvirusVaccinia virus
Virus hostiBos taurus (Bovine) [TaxID: 9913]
ProteomesiUP000000344: Genome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 479479Poly(A) polymerase catalytic subunitPRO_0000099107Add
BLAST

Interactioni

Subunit structurei

Heterodimer of a large (catalytic) subunit and a small (regulatory) subunit.

Protein-protein interaction databases

DIPiDIP-48309N.

Structurei

Secondary structure

1
479
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi13 – 2210
Helixi28 – 347
Helixi35 – 373
Helixi38 – 469
Helixi49 – 6315
Helixi71 – 8111
Helixi82 – 876
Helixi91 – 11121
Helixi113 – 1164
Helixi131 – 1344
Helixi135 – 14511
Helixi165 – 17814
Turni180 – 1823
Beta strandi183 – 1875
Helixi188 – 1925
Beta strandi204 – 2096
Helixi210 – 22516
Beta strandi230 – 2334
Beta strandi237 – 2448
Beta strandi250 – 2567
Helixi259 – 2646
Beta strandi267 – 2704
Beta strandi273 – 2764
Helixi278 – 28811
Helixi292 – 3009
Helixi302 – 32019
Beta strandi335 – 3384
Turni339 – 3424
Beta strandi343 – 3475
Turni349 – 3513
Beta strandi352 – 36110
Helixi363 – 37210
Helixi382 – 3843
Beta strandi386 – 3927
Beta strandi395 – 3995
Beta strandi405 – 4084
Helixi414 – 43017
Helixi436 – 4449
Beta strandi468 – 4714
Turni472 – 4754
Beta strandi476 – 4783

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2GA9X-ray2.30D11-479[»]
2GAFX-ray2.40D11-479[»]
3ER8X-ray3.18C/D1-479[»]
3ER9X-ray2.06B1-479[»]
3ERCX-ray3.21C/D1-479[»]
3OWGX-ray2.86A/B1-479[»]
ProteinModelPortaliP23371.
SMRiP23371. Positions 12-479.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP23371.

Family & Domainsi

Sequence similaritiesi

Family and domain databases

InterProiIPR024231. Pox_polyA_pol_nucTrfase.
IPR004976. Poxvirus_polyA_pol_cat.
IPR024397. Poxvirus_polyA_pol_cat_C.
IPR024398. Poxvirus_polyA_pol_cat_N.
[Graphical view]
PfamiPF03296. Pox_polyA_pol. 1 hit.
PF12629. Pox_polyA_pol_C. 1 hit.
PF12630. Pox_polyA_pol_N. 1 hit.
[Graphical view]
PIRSFiPIRSF015693. VAC-48L_nuct. 1 hit.

Sequencei

Sequence statusi: Complete.

P23371-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MNRNPDQNTL PNITLKIIET YLGRVPSVNE YHMLKLQARN IQKITVFNKD
60 70 80 90 100
IFVSLVKKNK KRFFSDVNTS ASEIKDRILS YFSKQTQTYN IGKLFTIIEL
110 120 130 140 150
QSVLVTTYTD ILGVLTIKAP NVISSKISYN VTSMEELARD MLNSMNVAVI
160 170 180 190 200
DKAKVMGRHN VSSLVKNVNK LMEEYLRRHN KSCICYGSYS LYLINPNIRY
210 220 230 240 250
GDIDILQTNS RTFLIDLAFL IKFITGNNII LSKIPYLRNY MVIKDENDNH
260 270 280 290 300
IIDSFNIRQD TMNVVPKIFI DNIYIVDPTF QLLNMIKMFS QIDRLEDLSK
310 320 330 340 350
DPEKFNARMA TMLEYVRYTH GIVFDGKRNN MPMKCIIDEN NRIVTVTTKD
360 370 380 390 400
YFSFKKCLVY LDENVLSSDI LDLNADTSCD FESVTNSVYL IHDNIMYTYF
410 420 430 440 450
SNTILLSDKG KVHEISARGL CAHILLYQML TSGEYKQCLS DLLNSMMNRD
460 470
KIPIYSHTER DKKPGRHGFI NIEKDIIVF
Length:479
Mass (Da):55,531
Last modified:December 7, 2004 - v2
Checksum:i2E76F2BB1A246D5F
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti10 – 101L → F in AAB59821. 1 PublicationCurated
Sequence conflicti68 – 681N → D in AAB59821. 1 PublicationCurated
Sequence conflicti199 – 1991R → L in AAB59821. 1 PublicationCurated

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
M36339 Genomic DNA. Translation: AAB59821.1.
AY243312 Genomic DNA. Translation: AAO89336.1.
RefSeqiYP_232939.1. NC_006998.1.

Genome annotation databases

GeneIDi3707514.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
M36339 Genomic DNA. Translation: AAB59821.1 .
AY243312 Genomic DNA. Translation: AAO89336.1 .
RefSeqi YP_232939.1. NC_006998.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
2GA9 X-ray 2.30 D 11-479 [» ]
2GAF X-ray 2.40 D 11-479 [» ]
3ER8 X-ray 3.18 C/D 1-479 [» ]
3ER9 X-ray 2.06 B 1-479 [» ]
3ERC X-ray 3.21 C/D 1-479 [» ]
3OWG X-ray 2.86 A/B 1-479 [» ]
ProteinModelPortali P23371.
SMRi P23371. Positions 12-479.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

DIPi DIP-48309N.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 3707514.

Miscellaneous databases

EvolutionaryTracei P23371.

Family and domain databases

InterProi IPR024231. Pox_polyA_pol_nucTrfase.
IPR004976. Poxvirus_polyA_pol_cat.
IPR024397. Poxvirus_polyA_pol_cat_C.
IPR024398. Poxvirus_polyA_pol_cat_N.
[Graphical view ]
Pfami PF03296. Pox_polyA_pol. 1 hit.
PF12629. Pox_polyA_pol_C. 1 hit.
PF12630. Pox_polyA_pol_N. 1 hit.
[Graphical view ]
PIRSFi PIRSF015693. VAC-48L_nuct. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Gershon P.D., Jones E.V., Moss B., Ahn B.-Y.
    Submitted (JUL-1990) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Sequencing of the coding region of Vaccinia-WR to an average 9-fold redundancy and an error rate of 0.16/10kb."
    Esposito J.J., Frace A.M., Sammons S.A., Olsen-Rasmussen M., Osborne J., Wohlhueter R.
    Submitted (FEB-2003) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. "Poly(A) polymerase and a dissociable polyadenylation stimulatory factor encoded by vaccinia virus."
    Gershon P.D., Ahn B.-Y., Garfield M., Moss B.
    Cell 66:1269-1278(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION.

Entry informationi

Entry nameiPAP1_VACCW
AccessioniPrimary (citable) accession number: P23371
Secondary accession number(s): Q80HX2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1991
Last sequence update: December 7, 2004
Last modified: October 1, 2014
This is version 70 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3