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P23370 (RS6_THETH) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 89. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
30S ribosomal protein S6
Alternative name(s):
TS9
Gene names
Name:rpsF
Synonyms:rps6
OrganismThermus thermophilus
Taxonomic identifier274 [NCBI]
Taxonomic lineageBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus

Protein attributes

Sequence length101 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Located on the outer edge of the platform on the body of the 30S subunit By similarity. HAMAP-Rule MF_00360

Subunit structure

Part of the 30S ribosomal subunit. Forms a tight heterodimer with protein S18 By similarity.

Sequence similarities

Belongs to the ribosomal protein S6P family.

Ontologies

Keywords
   LigandRNA-binding
rRNA-binding
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical term3D-structure
Direct protein sequencing
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionrRNA binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 10110130S ribosomal protein S6 HAMAP-Rule MF_00360
PRO_0000176864

Secondary structure

.............. 101
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P23370 [UniParc].

Last modified April 1, 1993. Version 2.
Checksum: 4FEE8005C74902E5

FASTA10111,973
        10         20         30         40         50         60 
MRRYEVNIVL NPNLDQSQLA LEKEIIQRAL ENYGARVEKV EELGLRRLAY PIAKDPQGYF 

        70         80         90        100 
LWYQVEMPED RVNDLARELR IRDNVRRVMV VKSQEPFLAN A 

« Hide

References

[1]"Sequencing and analysis of the Thermus thermophilus gene cluster equivalent to the S6 operon."
Shcherbakov D.V., Cherepanova E.A., Garber M.B.
Submitted (APR-1999) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: VK1.
[2]"Crystals of protein S6 from the 30 S ribosomal subunit of Thermus thermophilus."
Sedelnikova S.E., Agalarov S.C., Eliseikina I.A., Fomenkova N.P., Nikonov S.V., Garber M.B., Svensson L.A., Liljas A.
J. Mol. Biol. 220:549-550(1991) [PubMed] [Europe PMC] [Abstract]
Cited for: PROTEIN SEQUENCE OF 1-24.
[3]"Ribosomal proteins from Thermus thermophilus for structural investigations."
Garber M.B., Agalarov S.C., Eliseikina I.A., Fomenkova N.P., Nikonov S.V., Sedelnikova S.E., Shikaeva O.S., Vasiliev D., Zhdanov A.S., Liljas A., Svensson L.A.
Biochimie 74:327-336(1992) [PubMed] [Europe PMC] [Abstract]
Cited for: PROTEIN SEQUENCE OF 1-24.
[4]"Crystal structure of the ribosomal protein S6 from Thermus thermophilus."
Lindahl M., Svensson L.A., Liljas A., Sedelnikova S.E., Eliseikina I.A., Fomenkova N.P., Nevskaya N., Nikonov S.V., Garber M.B., Muranova T.A., Rykonova A.I., Amons R.
EMBO J. 13:1249-1254(1994) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.0 ANGSTROMS).
Strain: VK1.
[5]"Structural changes in the transition state of protein folding: alternative interpretations of curved chevron plots."
Otzen D.E., Kristensen O., Proctor M., Oliveberg M.
Biochemistry 38:6499-6511(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (1.95 ANGSTROMS).
Strain: VK1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AF146075 Genomic DNA. Translation: AAF27295.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1CQMX-ray1.65A/B1-101[»]
1CQNX-ray2.10A/B1-101[»]
1LOUX-ray1.95A1-101[»]
1QJHX-ray2.20A1-101[»]
1RISX-ray2.00A1-101[»]
1TWTmodel-I1-101[»]
2BVZX-ray2.20A1-101[»]
2BXJX-ray2.40A/B1-101[»]
4BYBX-ray3.35F1-101[»]
ProteinModelPortalP23370.
SMRP23370. Positions 1-101.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

DIPDIP-6173N.
STRING262724.TTC1740.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

Gene3D3.30.70.60. 1 hit.
HAMAPMF_00360. Ribosomal_S6.
InterProIPR000529. Ribosomal_S6.
IPR020815. Ribosomal_S6_CS.
IPR020814. Ribosomal_S6_plastid/chlpt.
IPR014717. Transl_elong_EF1B/ribosomal_S6.
[Graphical view]
PfamPF01250. Ribosomal_S6. 1 hit.
[Graphical view]
SUPFAMSSF54995. SSF54995. 1 hit.
TIGRFAMsTIGR00166. S6. 1 hit.
PROSITEPS01048. RIBOSOMAL_S6. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceP23370.

Entry information

Entry nameRS6_THETH
AccessionPrimary (citable) accession number: P23370
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1991
Last sequence update: April 1, 1993
Last modified: February 19, 2014
This is version 89 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references