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P23370

- RS6_THETH

UniProt

P23370 - RS6_THETH

Protein

30S ribosomal protein S6

Gene

rpsF

Organism
Thermus thermophilus
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
  1. Functioni

    Located on the outer edge of the platform on the body of the 30S subunit.By similarity

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-HAMAP
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    30S ribosomal protein S6
    Alternative name(s):
    TS9
    Gene namesi
    Name:rpsF
    Synonyms:rps6
    OrganismiThermus thermophilus
    Taxonomic identifieri274 [NCBI]
    Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 10110130S ribosomal protein S6PRO_0000176864Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 30S ribosomal subunit. Forms a tight heterodimer with protein S18 By similarity.By similarity

    Protein-protein interaction databases

    DIPiDIP-6173N.
    STRINGi262724.TTC1740.

    Structurei

    Secondary structure

    1
    101
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi2 – 109
    Helixi16 – 3217
    Beta strandi36 – 5217
    Beta strandi55 – 6713
    Helixi69 – 713
    Helixi72 – 809
    Beta strandi85 – 928

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1CQMX-ray1.65A/B1-101[»]
    1CQNX-ray2.10A/B1-101[»]
    1LOUX-ray1.95A1-101[»]
    1QJHX-ray2.20A1-101[»]
    1RISX-ray2.00A1-101[»]
    1TWTmodel-I1-101[»]
    2BVZX-ray2.20A1-101[»]
    2BXJX-ray2.40A/B1-101[»]
    4BYBX-ray3.35F1-101[»]
    ProteinModelPortaliP23370.
    SMRiP23370. Positions 1-101.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiP23370.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein S6P family.Curated

    Family and domain databases

    Gene3Di3.30.70.60. 1 hit.
    HAMAPiMF_00360. Ribosomal_S6.
    InterProiIPR000529. Ribosomal_S6.
    IPR020815. Ribosomal_S6_CS.
    IPR020814. Ribosomal_S6_plastid/chlpt.
    IPR014717. Transl_elong_EF1B/ribosomal_S6.
    [Graphical view]
    PfamiPF01250. Ribosomal_S6. 1 hit.
    [Graphical view]
    SUPFAMiSSF54995. SSF54995. 1 hit.
    TIGRFAMsiTIGR00166. S6. 1 hit.
    PROSITEiPS01048. RIBOSOMAL_S6. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P23370-1 [UniParc]FASTAAdd to Basket

    « Hide

    MRRYEVNIVL NPNLDQSQLA LEKEIIQRAL ENYGARVEKV EELGLRRLAY    50
    PIAKDPQGYF LWYQVEMPED RVNDLARELR IRDNVRRVMV VKSQEPFLAN 100
    A 101
    Length:101
    Mass (Da):11,973
    Last modified:April 1, 1993 - v2
    Checksum:i4FEE8005C74902E5
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AF146075 Genomic DNA. Translation: AAF27295.1.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AF146075 Genomic DNA. Translation: AAF27295.1 .

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1CQM X-ray 1.65 A/B 1-101 [» ]
    1CQN X-ray 2.10 A/B 1-101 [» ]
    1LOU X-ray 1.95 A 1-101 [» ]
    1QJH X-ray 2.20 A 1-101 [» ]
    1RIS X-ray 2.00 A 1-101 [» ]
    1TWT model - I 1-101 [» ]
    2BVZ X-ray 2.20 A 1-101 [» ]
    2BXJ X-ray 2.40 A/B 1-101 [» ]
    4BYB X-ray 3.35 F 1-101 [» ]
    ProteinModelPortali P23370.
    SMRi P23370. Positions 1-101.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    DIPi DIP-6173N.
    STRINGi 262724.TTC1740.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Miscellaneous databases

    EvolutionaryTracei P23370.

    Family and domain databases

    Gene3Di 3.30.70.60. 1 hit.
    HAMAPi MF_00360. Ribosomal_S6.
    InterProi IPR000529. Ribosomal_S6.
    IPR020815. Ribosomal_S6_CS.
    IPR020814. Ribosomal_S6_plastid/chlpt.
    IPR014717. Transl_elong_EF1B/ribosomal_S6.
    [Graphical view ]
    Pfami PF01250. Ribosomal_S6. 1 hit.
    [Graphical view ]
    SUPFAMi SSF54995. SSF54995. 1 hit.
    TIGRFAMsi TIGR00166. S6. 1 hit.
    PROSITEi PS01048. RIBOSOMAL_S6. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Sequencing and analysis of the Thermus thermophilus gene cluster equivalent to the S6 operon."
      Shcherbakov D.V., Cherepanova E.A., Garber M.B.
      Submitted (APR-1999) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
      Strain: VK1.
    2. Cited for: PROTEIN SEQUENCE OF 1-24.
    3. Cited for: PROTEIN SEQUENCE OF 1-24.
    4. "Crystal structure of the ribosomal protein S6 from Thermus thermophilus."
      Lindahl M., Svensson L.A., Liljas A., Sedelnikova S.E., Eliseikina I.A., Fomenkova N.P., Nevskaya N., Nikonov S.V., Garber M.B., Muranova T.A., Rykonova A.I., Amons R.
      EMBO J. 13:1249-1254(1994) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (2.0 ANGSTROMS).
      Strain: VK1.
    5. "Structural changes in the transition state of protein folding: alternative interpretations of curved chevron plots."
      Otzen D.E., Kristensen O., Proctor M., Oliveberg M.
      Biochemistry 38:6499-6511(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (1.95 ANGSTROMS).
      Strain: VK1.

    Entry informationi

    Entry nameiRS6_THETH
    AccessioniPrimary (citable) accession number: P23370
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 1, 1991
    Last sequence update: April 1, 1993
    Last modified: October 1, 2014
    This is version 90 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Direct protein sequencing

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3