P23352 (KALM_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 126.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Anosmin-1 Alternative name(s): Adhesion molecule-like X-linked Kallmann syndrome protein | ||||
| Gene names |
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| Organism | Homo sapiens (Human) | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 680 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Has a dual branch-promoting and guidance activity, which may play an important role in the patterning of mitral and tufted cell collaterals to the olfactory cortex By similarity. Chemoattractant for fetal olfactory epithelial cells. Ref.11 |
| Subunit structure | Interacts with FGFR1; this interaction does not interfere with FGF2-binding to FGFR1. Binds heparin. Heparin may promote or interfere with KAL1-FGFR1-FGF2 complex formation depending on the sequential order of its binding to the various constituents. For instance, heparin-KAL1 interaction favors subsequent binding to pre-existing binary FGFR1-FGF2 complex, while heparin-FGF2 complex does not interact with KAL1-FGFR1. Ref.11 |
| Subcellular location | Cell membrane; Peripheral membrane protein. Secreted. Note: Proteolytic cleavage may release it from the cell surface into the extracellular space. Ref.8 |
| Tissue specificity | Expressed in the cerebellum (at protein level). Ref.10 |
| Post-translational modification | N-glycosylated. Ref.8 May be proteolytically cleaved at the cell surface and released from the cell surface. Ref.8 |
| Involvement in disease | Defects in KAL1 are the cause of Kallmann syndrome type 1 (KAL1) [MIM:308700]; also known as hypogonadotropic hypogonadism and anosmia. Anosmia or hyposmia is related to the absence or hypoplasia of the olfactory bulbs and tracts. Hypogonadism is due to deficiency in gonadotropin-releasing hormone and probably results from a failure of embryonic migration of gonadotropin-releasing hormone-synthesizing neurons. In some patients other developmental anomalies can be present, which include renal agenesis, cleft lip and/or palate, selective tooth agenesis, and bimanual synkinesis. In some cases anosmia may be absent or inconspicuous. Ref.11 Ref.12 Ref.13 Ref.14 Ref.15 Ref.16 Ref.17 Ref.18 Ref.19 Ref.20 Ref.21 Ref.22 Ref.23 |
| Sequence similarities | Contains 4 fibronectin type-III domains. Contains 1 WAP domain. |
Ontologies
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Signal peptide | 1 – 24 | 24 | Potential | ||||||
| Chain | 25 – 680 | 656 | Anosmin-1 | PRO_0000041395 | |||||
Regions | |||||||||
| Domain | 127 – 176 | 50 | WAP | ||||||
| Domain | 183 – 284 | 102 | Fibronectin type-III 1 | ||||||
| Domain | 290 – 394 | 105 | Fibronectin type-III 2 | ||||||
| Domain | 425 – 520 | 96 | Fibronectin type-III 3 | ||||||
| Domain | 547 – 652 | 106 | Fibronectin type-III 4 | ||||||
Amino acid modifications | |||||||||
| Glycosylation | 71 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 209 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 300 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 470 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 553 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 564 | 1 | N-linked (GlcNAc...) Potential | ||||||
Natural variations | |||||||||
| Natural variant | 134 | 1 | C → G in KAL1. Ref.23 | VAR_065362 | |||||
| Natural variant | 163 | 1 | C → R in KAL1. Ref.23 | VAR_065363 | |||||
| Natural variant | 163 | 1 | C → Y in KAL1. Ref.17 | VAR_031012 | |||||
| Natural variant | 163 | 1 | Missing in KAL1. | VAR_031011 | |||||
| Natural variant | 172 | 1 | C → R in KAL1. Ref.15 | VAR_031013 | |||||
| Natural variant | 262 | 1 | R → P in KAL1. Ref.18 | VAR_031014 | |||||
| Natural variant | 267 | 1 | N → K in KAL1; loss of effect on the migratory activity of GnRH neurons; complete loss of FGFR1-binding. Ref.11 Ref.12 Ref.16 | VAR_007720 | |||||
| Natural variant | 304 | 1 | N → S in KAL1. Ref.20 | VAR_031015 | |||||
| Natural variant | 396 | 1 | S → L in KAL1. Ref.19 | VAR_031016 | |||||
| Natural variant | 514 | 1 | E → K in KAL1; loss of effect on the migratory activity of GnRH neurons; reduced FGFR1-binding. Ref.11 Ref.14 Ref.16 Ref.22 Corresponds to variant rs28937309 [ dbSNP | Ensembl ]. | VAR_012742 | |||||
| Natural variant | 517 | 1 | F → L in KAL1; loss of effect on the migratory activity of GnRH neurons; Reduced FGFR1-binding. Ref.11 Ref.13 Ref.16 | VAR_031017 | |||||
| Natural variant | 534 | 1 | V → I. Ref.1 Ref.3 Ref.5 Ref.6 Ref.12 Ref.13 Ref.14 Ref.15 Ref.17 Ref.20 Corresponds to variant rs808119 [ dbSNP | Ensembl ]. | VAR_007721 | |||||
| Natural variant | 539 | 1 | E → K in KAL1. Ref.22 | VAR_065364 | |||||
| Natural variant | 571 | 1 | W → R in KAL1. Ref.18 | VAR_031018 | |||||
| Natural variant | 666 | 1 | K → M. Ref.21 | VAR_031019 | |||||
| Natural variant | 668 | 1 | R → H. Ref.13 Ref.21 | VAR_031020 | |||||
Experimental info | |||||||||
| Sequence conflict | 48 | 1 | R → P in AAA59202. Ref.1 | ||||||
| Sequence conflict | 48 | 1 | R → P in CAA42841. Ref.3 | ||||||
| Sequence conflict | 48 | 1 | R → P in CAA57554. Ref.7 | ||||||
| Sequence conflict | 70 – 71 | 2 | NN → VR in CAA57554. Ref.7 | ||||||
| Sequence conflict | 373 | 1 | E → K in CAA42841. Ref.3 | ||||||
| Sequence conflict | 540 | 1 | A → R in CAA42841. Ref.3 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "The candidate gene for the X-linked Kallmann syndrome encodes a protein related to adhesion molecules." Legouis R., Hardelin J.-P., Levilliers J., Claverie J.-M., Compain S., Wunderle V., Millasseau P., le Paslier D., Cohen D., Caterina D., Bougueleret L., Delemarre-Van de Waal H., Lutfalla G., Weissenbach J., Petit C. Cell 67:423-435(1991) [PubMed: 1913827] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA], VARIANT ILE-534. |
| [2] | "Structure of the X-linked Kallmann syndrome gene and its homologous pseudogene on the Y chromosome." del Castillo I., Cohen-Salmon M., Blanchard S., Lutfalla G., Petit C. Nat. Genet. 2:305-310(1992) [PubMed: 1303284] [Abstract] Cited for: SEQUENCE REVISION. |
| [3] | "A gene deleted in Kallmann's syndrome shares homology with neural cell adhesion and axonal path-finding molecules." Franco B., Guioli S., Pragliola A., Inceri B., Bardoni B., Tonlorenzi R., Carrozo R., Maestrini E., Pieretti M., Taillon-Miller P., Brown C.J., Willard H.F., Lawrence C., Persico N.G., Camerino G., Ballabio A. Nature 353:529-536(1991) [PubMed: 1922361] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA], VARIANT ILE-534. |
| [4] | "The DNA sequence of the human X chromosome." Ross M.T., Grafham D.V., Coffey A.J., Scherer S., McLay K., Muzny D., Platzer M., Howell G.R., Burrows C., Bird C.P., Frankish A., Lovell F.L., Howe K.L., Ashurst J.L., Fulton R.S., Sudbrak R., Wen G., Jones M.C. Bentley D.R.Nature 434:325-337(2005) [PubMed: 15772651] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [5] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], VARIANT ILE-534. |
| [6] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANT ILE-534. Tissue: Brain. |
| [7] | "Characterization of the promoter of the human KAL gene, responsible for the X-chromosome-linked Kallmann syndrome." Cohen-Salmon M., Tronche F., del Castillo I., Petit C. Gene 164:235-242(1995) [PubMed: 7590336] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-71. |
| [8] | "The Kallmann syndrome gene product expressed in COS cells is cleaved on the cell surface to yield a diffusible component." Rugarli E.I., Ghezzi C., Valsecchi V., Ballabio A. Hum. Mol. Genet. 5:1109-1115(1996) [PubMed: 8842728] [Abstract] Cited for: SUBCELLULAR LOCATION, GLYCOSYLATION, PROTEOLYTIC CLEAVAGE. |
| [9] | "Initial characterization of anosmin-1, a putative extracellular matrix protein synthesized by definite neuronal cell populations in the central nervous system." Soussi-Yanicostas N., Hardelin J.-P., del Mar Arroyo-Jimenez M., Ardouin O., Legouis R., Levilliers J., Traincard F., Betton J.-M., Cabanie L., Petit C. J. Cell Sci. 109:1749-1757(1996) [PubMed: 8832397] [Abstract] Cited for: CHARACTERIZATION. |
| [10] | "Anosmin-1, defective in the X-linked form of Kallmann syndrome, promotes axonal branch formation from olfactory bulb output neurons." Soussi-Yanicostas N., de Castro F., Julliard A.K., Perfettini I., Chedotal A., Petit C. Cell 109:217-228(2002) [PubMed: 12007408] [Abstract] Cited for: TISSUE SPECIFICITY. |
| [11] | "Novel mechanisms of fibroblast growth factor receptor 1 regulation by extracellular matrix protein anosmin-1." Hu Y., Guimond S.E., Travers P., Cadman S., Hohenester E., Turnbull J.E., Kim S.H., Bouloux P.M. J. Biol. Chem. 284:29905-29920(2009) [PubMed: 19696444] [Abstract] Cited for: FUNCTION, INTERACTION WITH FGFR1, CHARACTERIZATION OF VARIANTS KAL1 LYS-267; LYS-514 AND LEU-517, HEPARIN-BINDING. |
| [12] | "Heterogeneity in the mutations responsible for X chromosome-linked Kallmann syndrome." Hardelin J.-P., Levilliers J., Blanchard S., Carel J.-C., Leutenegger M., Pinard-Bertelletto J.-P., Bouloux P., Petit C. Hum. Mol. Genet. 2:373-377(1993) [PubMed: 8504298] [Abstract] Cited for: VARIANT KAL1 LYS-267, VARIANT ILE-534. |
| [13] | "Genetic heterogeneity evidenced by low incidence of KAL-1 gene mutations in sporadic cases of gonadotropin-releasing hormone deficiency." Georgopoulos N.A., Pralong F.P., Seidman C.E., Seidman J.G., Crowley W.F. Jr., Vallejo M. J. Clin. Endocrinol. Metab. 82:213-217(1997) [PubMed: 8989261] [Abstract] Cited for: VARIANT KAL1 LEU-517, VARIANTS ILE-534 AND HIS-668. |
| [14] | "A recurrent missense mutation in the KAL gene in patients with X-linked Kallmann's syndrome." Maya-Nunez G., Zenteno J.C., Ulloa-Aguirre A., Kofman-Alfaro S., Mendez J.P. J. Clin. Endocrinol. Metab. 83:1650-1653(1998) [PubMed: 9589672] [Abstract] Cited for: VARIANT KAL1 LYS-514, VARIANT ILE-534. |
| [15] | "The importance of autosomal genes in Kallmann syndrome: genotype-phenotype correlations and neuroendocrine characteristics." Oliveira L.M.B., Seminara S.B., Beranova M., Hayes F.J., Valkenburgh S.B., Schipani E., Costa E.M.F., Latronico A.C., Crowley W.F. Jr., Vallejo M. J. Clin. Endocrinol. Metab. 86:1532-1538(2001) [PubMed: 11297579] [Abstract] Cited for: VARIANT KAL1 ARG-172, VARIANT ILE-534. |
| [16] | "The product of X-linked Kallmann's syndrome gene (KAL1) affects the migratory activity of gonadotropin-releasing hormone (GnRH)-producing neurons." Cariboni A., Pimpinelli F., Colamarino S., Zaninetti R., Piccolella M., Rumio C., Piva F., Rugarli E.I., Maggi R. Hum. Mol. Genet. 13:2781-2791(2004) [PubMed: 15471890] [Abstract] Cited for: CHARACTERIZATION OF VARIANTS KAL1 LYS-267; LYS-514 AND LEU-517. |
| [17] | "Clinical assessment and mutation analysis of Kallmann syndrome 1 (KAL1) and fibroblast growth factor receptor 1 (FGFR1, or KAL2) in five families and 18 sporadic patients." Sato N., Katsumata N., Kagami M., Hasegawa T., Hori N., Kawakita S., Minowada S., Shimotsuka A., Shishiba Y., Yokozawa M., Yasuda T., Nagasaki K., Hasegawa D., Hasegawa Y., Tachibana K., Naiki Y., Horikawa R., Tanaka T., Ogata T. J. Clin. Endocrinol. Metab. 89:1079-1088(2004) [PubMed: 15001591] [Abstract] Cited for: VARIANT KAL1 TYR-163, VARIANT ILE-534. |
| [18] | "Kallmann syndrome: 14 novel mutations in KAL1 and FGFR1 (KAL2)." Albuisson J., Pecheux C., Carel J.-C., Lacombe D., Leheup B., Lapuzina P., Bouchard P., Legius E., Matthijs G., Wasniewska M., Delpech M., Young J., Hardelin J.-P., Dode C. Hum. Mutat. 25:98-99(2005) [PubMed: 15605412] [Abstract] Cited for: VARIANTS KAL1 PRO-262 AND ARG-571. |
| [19] | "Kallmann syndrome: mutations in the genes encoding prokineticin-2 and prokineticin receptor-2." Dode C., Teixeira L., Levilliers J., Fouveaut C., Bouchard P., Kottler M.-L., Lespinasse J., Lienhardt-Roussie A., Mathieu M., Moerman A., Morgan G., Murat A., Toublanc J.-E., Wolczynski S., Delpech M., Petit C., Young J., Hardelin J.-P. PLoS Genet. 2:1648-1652(2006) [PubMed: 17054399] [Abstract] Cited for: VARIANT KAL1 LEU-396. |
| [20] | "Clinical assessment and molecular analysis of GnRHR and KAL1 genes in males with idiopathic hypogonadotrophic hypogonadism." Versiani B.R., Trarbach E., Koenigkam-Santos M., dos Santos A.C., Elias L.L.K., Moreira A.C., Latronico A.C., de Castro M. Clin. Endocrinol. (Oxf.) 66:173-179(2007) [PubMed: 17223984] [Abstract] Cited for: VARIANT KAL1 SER-304, VARIANT ILE-534. |
| [21] | "KAL1 mutations are not a common cause of idiopathic hypogonadotrophic hypogonadism in humans." Bhagavath B., Xu N., Ozata M., Rosenfield R.L., Bick D.P., Sherins R.J., Layman L.C. Mol. Hum. Reprod. 13:165-170(2007) [PubMed: 17213338] [Abstract] Cited for: VARIANT KAL1 CYS-163 DEL, VARIANTS MET-666 AND HIS-668. |
| [22] | "A fertile male patient with Kallmann syndrome and two missense mutations in the KAL1 gene." Zhang S., Wang T., Yang J., Liu Z., Wang S., Liu J. Fertil. Steril. 95:1789-1792(2011) [PubMed: 21168128] [Abstract] Cited for: VARIANTS KAL1 LYS-514 AND LYS-539. |
| [23] | "Identification of two novel missense mutations in the KAL1 gene in Han Chinese subjects with Kallmann Syndrome." Jap T.S., Chiu C.Y., Lirng J.F., Won G.S. J. Endocrinol. Invest. 34:53-59(2011) [PubMed: 20530987] [Abstract] Cited for: VARIANTS KAL1 GLY-134 AND ARG-163. |
| + | Additional computationally mapped references. |
Web resources
Cross-references
Sequence databases | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | M97252 mRNA. Translation: AAA59202.1. S60085 mRNA. Translation: AAB20108.1. Sequence problems. X60299 mRNA. Translation: CAA42841.1. AC005184 Genomic DNA. No translation available. AC006062 Genomic DNA. No translation available. AC096511 Genomic DNA. No translation available. CH471074 Genomic DNA. Translation: EAW98759.1. BC137426 mRNA. Translation: AAI37427.1. BC137427 mRNA. Translation: AAI37428.1. X82034 Genomic DNA. Translation: CAA57554.1. | ||||||||||||
| IPI | IPI00011174. | ||||||||||||
| PIR | A40351. S17982. | ||||||||||||
| RefSeq | NP_000207.2. NM_000216.2. | ||||||||||||
| UniGene | Hs.521869. | ||||||||||||
3D structure databases | |||||||||||||
| PDBe RCSB PDB PDBj |
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| ProteinModelPortal | P23352. | ||||||||||||
| SMR | P23352. Positions 128-176, 245-276, 289-383, 439-521, 548-656. | ||||||||||||
| ModBase | Search... | ||||||||||||
Protein-protein interaction databases | |||||||||||||
| STRING | P23352. | ||||||||||||
PTM databases | |||||||||||||
| PhosphoSite | P23352. | ||||||||||||
Polymorphism databases | |||||||||||||
| DMDM | 134048661. | ||||||||||||
Proteomic databases | |||||||||||||
| PRIDE | P23352. | ||||||||||||
Protocols and materials databases | |||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||
Genome annotation databases | |||||||||||||
| Ensembl | ENST00000262648; ENSP00000262648; ENSG00000011201. | ||||||||||||
| GeneID | 3730. | ||||||||||||
| KEGG | hsa:3730. | ||||||||||||
| NMPDR | fig|9606.3.peg.32416. | ||||||||||||
| UCSC | uc004csf.1. human. | ||||||||||||
Organism-specific databases | |||||||||||||
| CTD | 3730. | ||||||||||||
| GeneCards | GC0XM008456. | ||||||||||||
| H-InvDB | HIX0056280. | ||||||||||||
| HGNC | HGNC:6211. KAL1. | ||||||||||||
| MIM | 300836. gene. 308700. phenotype. | ||||||||||||
| neXtProt | NX_P23352. | ||||||||||||
| Orphanet | 478. Kallmann syndrome. | ||||||||||||
| PharmGKB | PA30012. | ||||||||||||
| GenAtlas | Search... | ||||||||||||
Phylogenomic databases | |||||||||||||
| eggNOG | prNOG16515. | ||||||||||||
| GeneTree | ENSGT00440000033720. | ||||||||||||
| HOGENOM | HBG445029. | ||||||||||||
| HOVERGEN | HBG006198. | ||||||||||||
| InParanoid | P23352. | ||||||||||||
| OMA | PKNLYKG. | ||||||||||||
| OrthoDB | EOG45QHCR. | ||||||||||||
| PhylomeDB | P23352. | ||||||||||||
Gene expression databases | |||||||||||||
| ArrayExpress | P23352. | ||||||||||||
| Bgee | P23352. | ||||||||||||
| CleanEx | HS_KAL1. | ||||||||||||
| Genevestigator | P23352. | ||||||||||||
| GermOnline | ENSG00000011201. Homo sapiens. | ||||||||||||
Family and domain databases | |||||||||||||
| InterPro | IPR015874. 4-disulphide_core. IPR003961. Fibronectin_type3. IPR013783. Ig-like_fold. IPR008197. Whey_acidic_protein_4-diS_core. [Graphical view] | ||||||||||||
| Gene3D | G3DSA:2.60.40.10. Ig-like_fold. 3 hits. G3DSA:4.10.75.10. Whey_acidic_protein_4-diS_core. 1 hit. | ||||||||||||
| Pfam | PF00041. fn3. 3 hits. PF00095. WAP. 1 hit. [Graphical view] | ||||||||||||
| PRINTS | PR00003. 4DISULPHCORE. | ||||||||||||
| SMART | SM00060. FN3. 4 hits. SM00217. WAP. 1 hit. [Graphical view] | ||||||||||||
| SUPFAM | SSF49265. FN_III-like. 3 hits. SSF57256. WAP. 1 hit. | ||||||||||||
| PROSITE | PS50853. FN3. 4 hits. PS51390. WAP. 1 hit. [Graphical view] | ||||||||||||
| ProtoNet | Search... | ||||||||||||
Other | |||||||||||||
| NextBio | 14603. | ||||||||||||
| SOURCE | Search... | ||||||||||||
Entry information
| Entry name | KALM_HUMAN | ||||||||
| Accession | Primary (citable) accession number: P23352 Secondary accession number(s): B2RPF8 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome X Human chromosome X: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with