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Protein

50S ribosomal protein L10

Gene

rplJ

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors.By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L10
Gene namesi
Name:rplJ
Synonyms:rpl10
Ordered Locus Names:sll1745
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
ProteomesiUP000001425 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 17317350S ribosomal protein L10PRO_0000154733Add
BLAST

Proteomic databases

PaxDbiP23350.

Interactioni

Subunit structurei

Part of the ribosomal stalk of the 50S ribosomal subunit. The N-terminus interacts with L11 and the large rRNA to form the base of the stalk. The C-terminus forms an elongated spine to which L12 dimers bind in a sequential fashion forming a multimeric L10(L12)X complex (By similarity).By similarity

Structurei

3D structure databases

ProteinModelPortaliP23350.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L10P family.Curated

Phylogenomic databases

eggNOGiCOG0244.
HOGENOMiHOG000004852.
InParanoidiP23350.
KOiK02864.
OMAiVVVAHYS.
OrthoDBiEOG6DNTDR.
PhylomeDBiP23350.

Family and domain databases

HAMAPiMF_00362. Ribosomal_L10.
InterProiIPR022973. Ribosomal_L10.
IPR002363. Ribosomal_L10_eubac_CS.
IPR001790. Ribosomal_L10P.
[Graphical view]
PfamiPF00466. Ribosomal_L10. 1 hit.
[Graphical view]
PROSITEiPS01109. RIBOSOMAL_L10. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P23350-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGRTRENKAT VISDVQELFQ DAQMTVIIDY QGLTVAEITD LRNRLRPLGG
60 70 80 90 100
TCKIAKNTLV RRALAGQEAW SPMEEFLTGT TAILVLKEDL GGAIKAYKKF
110 120 130 140 150
QKDTKKTELR GGVLEGKSLT QADVEAIGDL PSKEQLMGQI AGGINALATK
160 170
IALGIKEVPA SVARGLQAHV DKE
Length:173
Mass (Da):18,676
Last modified:November 1, 1991 - v1
Checksum:i46B8C44D644F40A4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X53178 Genomic DNA. Translation: CAA37317.1.
BA000022 Genomic DNA. Translation: BAA17417.1.
PIRiS13068.

Genome annotation databases

EnsemblBacteriaiBAA17417; BAA17417; BAA17417.
KEGGisyy:SYNGTS_0843.
syz:MYO_18480.
PATRICi23838692. VBISynSp132158_0913.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X53178 Genomic DNA. Translation: CAA37317.1.
BA000022 Genomic DNA. Translation: BAA17417.1.
PIRiS13068.

3D structure databases

ProteinModelPortaliP23350.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PaxDbiP23350.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA17417; BAA17417; BAA17417.
KEGGisyy:SYNGTS_0843.
syz:MYO_18480.
PATRICi23838692. VBISynSp132158_0913.

Phylogenomic databases

eggNOGiCOG0244.
HOGENOMiHOG000004852.
InParanoidiP23350.
KOiK02864.
OMAiVVVAHYS.
OrthoDBiEOG6DNTDR.
PhylomeDBiP23350.

Family and domain databases

HAMAPiMF_00362. Ribosomal_L10.
InterProiIPR022973. Ribosomal_L10.
IPR002363. Ribosomal_L10_eubac_CS.
IPR001790. Ribosomal_L10P.
[Graphical view]
PfamiPF00466. Ribosomal_L10. 1 hit.
[Graphical view]
PROSITEiPS01109. RIBOSOMAL_L10. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Cloning and characterization of the genes for ribosomal proteins L10 and L12 from Synechocystis Sp. PCC 6803: comparison of gene clustering pattern and protein sequence homology between cyanobacteria and chloroplasts."
    Sibold C., Subramanian A.R.
    Biochim. Biophys. Acta 1050:61-68(1990) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
    Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
    , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PCC 6803 / Kazusa.

Entry informationi

Entry nameiRL10_SYNY3
AccessioniPrimary (citable) accession number: P23350
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1991
Last sequence update: November 1, 1991
Last modified: July 22, 2015
This is version 90 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families
  3. Synechocystis PCC 6803
    Synechocystis (strain PCC 6803): entries and gene names

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.