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P23350 (RL10_SYNY3) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 82. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L10
Gene names
Name:rplJ
Synonyms:rpl10
Ordered Locus Names:sll1745
OrganismSynechocystis sp. (strain PCC 6803 / Kazusa) [Reference proteome] [HAMAP]
Taxonomic identifier1111708 [NCBI]
Taxonomic lineageBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis

Protein attributes

Sequence length173 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors By similarity. HAMAP-Rule MF_00362

Subunit structure

Part of the ribosomal stalk of the 50S ribosomal subunit. The N-terminus interacts with L11 and the large rRNA to form the base of the stalk. The C-terminus forms an elongated spine to which L12 dimers bind in a sequential fashion forming a multimeric L10(L12)X complex By similarity.

Sequence similarities

Belongs to the ribosomal protein L10P family.

Ontologies

Keywords
   LigandRNA-binding
rRNA-binding
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processribosome biogenesis

Inferred from electronic annotation. Source: InterPro

translation

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionLSU rRNA binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 17317350S ribosomal protein L10 HAMAP-Rule MF_00362
PRO_0000154733

Sequences

Sequence LengthMass (Da)Tools
P23350 [UniParc].

Last modified November 1, 1991. Version 1.
Checksum: 46B8C44D644F40A4

FASTA17318,676
        10         20         30         40         50         60 
MGRTRENKAT VISDVQELFQ DAQMTVIIDY QGLTVAEITD LRNRLRPLGG TCKIAKNTLV 

        70         80         90        100        110        120 
RRALAGQEAW SPMEEFLTGT TAILVLKEDL GGAIKAYKKF QKDTKKTELR GGVLEGKSLT 

       130        140        150        160        170 
QADVEAIGDL PSKEQLMGQI AGGINALATK IALGIKEVPA SVARGLQAHV DKE 

« Hide

References

« Hide 'large scale' references
[1]"Cloning and characterization of the genes for ribosomal proteins L10 and L12 from Synechocystis Sp. PCC 6803: comparison of gene clustering pattern and protein sequence homology between cyanobacteria and chloroplasts."
Sibold C., Subramanian A.R.
Biochim. Biophys. Acta 1050:61-68(1990) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]"Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S. expand/collapse author list , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: PCC 6803 / Kazusa.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
X53178 Genomic DNA. Translation: CAA37317.1.
BA000022 Genomic DNA. Translation: BAA17417.1.
PIRS13068.
RefSeqNP_440737.1. NC_000911.1.
YP_005650796.1. NC_017277.1.
YP_007450620.1. NC_020286.1.

3D structure databases

ProteinModelPortalP23350.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING1148.sll1745.

Proteomic databases

PaxDbP23350.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAA17417; BAA17417; BAA17417.
GeneID954040.
KEGGsyn:sll1745.
syy:SYNGTS_0843.
syz:MYO_18480.
PATRIC23838692. VBISynSp132158_0913.

Phylogenomic databases

eggNOGCOG0244.
HOGENOMHOG000004852.
KOK02864.
OMADQVGKQK.
OrthoDBEOG6DNTDR.
PhylomeDBP23350.

Family and domain databases

HAMAPMF_00362. Ribosomal_L10.
InterProIPR022973. Ribosomal_L10.
IPR001790. Ribosomal_L10/acidic_P0.
IPR002363. Ribosomal_L10_eubac_CS.
[Graphical view]
PfamPF00466. Ribosomal_L10. 1 hit.
[Graphical view]
PROSITEPS01109. RIBOSOMAL_L10. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRL10_SYNY3
AccessionPrimary (citable) accession number: P23350
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1991
Last sequence update: November 1, 1991
Last modified: July 9, 2014
This is version 82 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Synechocystis PCC 6803

Synechocystis (strain PCC 6803): entries and gene names

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries