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Reviewed, UniProtKB/Swiss-Prot P23219 (PGH1_HUMAN)

Last modified January 19, 2010. Version 125. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (6) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Alternative products · Sequence annotation (Features) · Sequences · References · Web resources · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    Prostaglandin G/H synthase 1
    EC=1.14.99.1
Alternative name(s):
    Cyclooxygenase-1
      Short name=COX-1
    Prostaglandin-endoperoxide synthase 1
    Prostaglandin H2 synthase 1
      Short name=PGH synthase 1
      Short name=PGHS-1
      Short name=PHS 1
Gene names
Name: PTGS1
Synonyms: COX1
OrganismHomo sapiens (Human) [Complete proteome]
Taxonomic identifier9606 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Protein attributes

Sequence length599 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level.

General annotation (Comments)

Function

May play an important role in regulating or promoting cell proliferation in some normal and neoplastically transformed cells.

Catalytic activity

Arachidonate + AH2 + 2 O2 = prostaglandin H2 + A + H2O.

Cofactor

Binds 1 heme B (iron-protoporphyrin IX) group per subunit By similarity.

Pathway

Lipid metabolism; prostaglandin biosynthesis.

Subunit structure

Homodimer.

Subcellular location

Microsome membrane; Peripheral membrane protein. Endoplasmic reticulum membrane; Peripheral membrane protein.

Miscellaneous

This enzyme acts both as a dioxygenase and as a peroxidase.

This enzyme is the target of nonsteroidal anti-inflammatory drugs such as aspirin.

Sequence similarities

Belongs to the prostaglandin G/H synthase family.

Contains 1 EGF-like domain.

Sequence caution

The sequence CAI14716.1 differs from that shown. Reason: Erroneous gene model prediction.

Ontologies

Keywords
   Biological processFatty acid biosynthesis
Lipid synthesis
Prostaglandin biosynthesis
   Cellular componentEndoplasmic reticulum
Membrane
Microsome
   Coding sequence diversityAlternative splicing
Polymorphism
   DomainEGF-like domain
Signal
   LigandHeme
Iron
Metal-binding
   Molecular functionDioxygenase
Oxidoreductase
Peroxidase
   PTMDisulfide bond
Glycoprotein
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processoxidation reduction

Inferred from electronic annotation. Source: UniProtKB-KW

prostaglandin biosynthetic process

Inferred from sequence or structural similarity. Source: UniProtKB

regulation of blood pressure

Inferred from sequence or structural similarity. Source: UniProtKB

response to oxidative stress

Inferred from electronic annotation. Source: InterPro

   Cellular componentGolgi apparatus

Inferred from direct assay. Source: HPA

endoplasmic reticulum

Inferred from electronic annotation. Source: UniProtKB-KW

extrinsic to membrane

Inferred from electronic annotation. Source: UniProtKB-SubCell

microsome

Inferred from sequence or structural similarity. Source: UniProtKB

plasma membrane

Inferred from direct assay. Source: HPA

   Molecular functionheme binding

Inferred from electronic annotation. Source: InterPro

oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

Inferred from electronic annotation. Source: UniProtKB-KW

peroxidase activity

Inferred from electronic annotation. Source: UniProtKB-KW

prostaglandin-endoperoxide synthase activity

Traceable author statement. Source: ProtInc

Complete GO annotation...

Alternative products

This entry describes 2 isoforms produced by alternative splicing. [Align] [Select]
Isoform Long (identifier: P23219-1)

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
Isoform Short (identifier: P23219-2)

The sequence of this isoform differs from the canonical sequence as follows:
     396-432: Missing.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2323
Chain24 – 599576Prostaglandin G/H synthase 1
PRO_0000023868

Regions

Domain31 – 6939EGF-like

Sites

Active site2061Proton acceptor By similarity
Active site3841For cyclooxygenase activity By similarity
Metal binding3871Iron (heme axial ligand) By similarity
Site5291Aspirin-acetylated serine

Amino acid modifications

Glycosylation671N-linked (GlcNAc...) Potential
Glycosylation1031N-linked (GlcNAc...) Potential
Glycosylation1431N-linked (GlcNAc...) Potential
Disulfide bond35 ↔ 46 By similarity
Disulfide bond36 ↔ 158 By similarity
Disulfide bond40 ↔ 56 By similarity
Disulfide bond58 ↔ 68 By similarity
Disulfide bond568 ↔ 574 By similarity

Natural variations

Alternative sequence396 – 43237Missing in isoform Short.
VSP_004673
Natural variant81R → W: dbSNP rs1236913. Ref.5 Ref.6 Ref.8
VAR_013451
Natural variant171P → L: dbSNP rs3842787. Ref.5 Ref.6
VAR_013452
Natural variant531R → H: dbSNP rs3842789. Ref.6
VAR_019161
Natural variant1491R → L: dbSNP rs10306140. Ref.6
VAR_019162
Natural variant1851K → T: dbSNP rs3842792.
VAR_056663
Natural variant2371L → M: dbSNP rs5789. Ref.6 Ref.11
VAR_019163
Natural variant3411K → R: dbSNP rs3842799.
VAR_056664
Natural variant3591K → R: dbSNP rs5791.
VAR_013453
Natural variant4431I → V: dbSNP rs5792.
VAR_013454
Natural variant4811V → I: dbSNP rs5794. Ref.11
VAR_028017

Experimental info

Mutagenesis5291S → N: Abolishes cyclooxygenase activity.
Sequence conflict121F → L in AAA36439. Ref.1
Sequence conflict1131R → L in AAA36439. Ref.1
Sequence conflict3781M → T in AAA36439. Ref.1

Sequences

Sequence LengthMass (Da)Tools
Isoform Long [UniParc].

Last modified November 1, 1991. Version 1.
Checksum: 8162EC49509E18DC

FASTA59968,656
        10         20         30         40         50         60 
MSRSLLLRFL LFLLLLPPLP VLLADPGAPT PVNPCCYYPC QHQGICVRFG LDRYQCDCTR 

        70         80         90        100        110        120 
TGYSGPNCTI PGLWTWLRNS LRPSPSFTHF LLTHGRWFWE FVNATFIREM LMRLVLTVRS 

       130        140        150        160        170        180 
NLIPSPPTYN SAHDYISWES FSNVSYYTRI LPSVPKDCPT PMGTKGKKQL PDAQLLARRF 

       190        200        210        220        230        240 
LLRRKFIPDP QGTNLMFAFF AQHFTHQFFK TSGKMGPGFT KALGHGVDLG HIYGDNLERQ 

       250        260        270        280        290        300 
YQLRLFKDGK LKYQVLDGEM YPPSVEEAPV LMHYPRGIPP QSQMAVGQEV FGLLPGLMLY 

       310        320        330        340        350        360 
ATLWLREHNR VCDLLKAEHP TWGDEQLFQT TRLILIGETI KIVIEEYVQQ LSGYFLQLKF 

       370        380        390        400        410        420 
DPELLFGVQF QYRNRIAMEF NHLYHWHPLM PDSFKVGSQE YSYEQFLFNT SMLVDYGVEA 

       430        440        450        460        470        480 
LVDAFSRQIA GRIGGGRNMD HHILHVAVDV IRESREMRLQ PFNEYRKRFG MKPYTSFQEL 

       490        500        510        520        530        540 
VGEKEMAAEL EELYGDIDAL EFYPGLLLEK CHPNSIFGES MIEIGAPFSL KGLLGNPICS 

       550        560        570        580        590 
PEYWKPSTFG GEVGFNIVKT ATLKKLVCLN TKTCPYVSFR VPDASQDDGP AVERPSTEL 

« Hide

Isoform Short.

Checksum: 7AB78C841FD0CDD0
Show »

FASTA56264,483

References

« Hide 'large scale' references
[1]"Cloning of human gene encoding prostaglandin endoperoxide synthase and primary structure of the enzyme."
Yokoyama C., Tanabe T.
Biochem. Biophys. Res. Commun. 165:888-894(1989) [PubMed: 2512924] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]"Human platelet/erythroleukemia cell prostaglandin G/H synthase: cDNA cloning, expression, and gene chromosomal assignment."
Funk C.D., Funk L.B., Kennedy M.E., Pong A.S., Fitzgerald G.A.
FASEB J. 5:2304-2312(1991) [PubMed: 1907252] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA].
[3]"Immunoaffinity purification and cDNA cloning of human platelet prostaglandin endoperoxide synthase (cyclooxygenase)."
Takahashi Y., Ueda N., Yoshimoto T., Yamamoto S., Yokoyama C., Miyata A., Tanabe T., Fuse I., Hattori A., Shibata A.
Biochem. Biophys. Res. Commun. 182:433-438(1992) [PubMed: 1734857] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA].
Tissue: Platelet.
[4]"Alternative splicing of human prostaglandin G/H synthase mRNA and evidence of differential regulation of the resulting transcripts by transforming growth factor beta 1, interleukin 1 beta, and tumor necrosis factor alpha."
Diaz A., Reginato A.M., Jimenez S.A.
J. Biol. Chem. 267:10816-10822(1992) [PubMed: 1587858] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA].
Tissue: Lung fibroblast.
[5]"Characterization of the human prostaglandin H synthase 1 gene (PTGS1): exclusion by genetic linkage analysis as a second modifier gene in familial thrombosis."
Scott B.T., Hasstedt S.J., Bovill E.G., Callas P.W., Valliere J.E., Wang L.-H., Wu K.K., Long G.L.
Blood Coagul. Fibrinolysis 13:519-531(2002) [PubMed: 12192304] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], VARIANTS TRP-8 AND LEU-17.
[6]SeattleSNPs variation discovery resource
Submitted (OCT-2003) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], VARIANTS TRP-8; LEU-17; HIS-53; LEU-149 AND MET-237.
[7]"Complete sequencing and characterization of 21,243 full-length human cDNAs."
Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. expand/collapse author list , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
Nat. Genet. 36:40-45(2004) [PubMed: 14702039] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM LONG).
Tissue: Hippocampus.
[8]"DNA sequence and analysis of human chromosome 9."
Humphray S.J., Oliver K., Hunt A.R., Plumb R.W., Loveland J.E., Howe K.L., Andrews T.D., Searle S., Hunt S.E., Scott C.E., Jones M.C., Ainscough R., Almeida J.P., Ambrose K.D., Ashwell R.I.S., Babbage A.K., Babbage S., Bagguley C.L. expand/collapse author list , Bailey J., Banerjee R., Barker D.J., Barlow K.F., Bates K., Beasley H., Beasley O., Bird C.P., Bray-Allen S., Brown A.J., Brown J.Y., Burford D., Burrill W., Burton J., Carder C., Carter N.P., Chapman J.C., Chen Y., Clarke G., Clark S.Y., Clee C.M., Clegg S., Collier R.E., Corby N., Crosier M., Cummings A.T., Davies J., Dhami P., Dunn M., Dutta I., Dyer L.W., Earthrowl M.E., Faulkner L., Fleming C.J., Frankish A., Frankland J.A., French L., Fricker D.G., Garner P., Garnett J., Ghori J., Gilbert J.G.R., Glison C., Grafham D.V., Gribble S., Griffiths C., Griffiths-Jones S., Grocock R., Guy J., Hall R.E., Hammond S., Harley J.L., Harrison E.S.I., Hart E.A., Heath P.D., Henderson C.D., Hopkins B.L., Howard P.J., Howden P.J., Huckle E., Johnson C., Johnson D., Joy A.A., Kay M., Keenan S., Kershaw J.K., Kimberley A.M., King A., Knights A., Laird G.K., Langford C., Lawlor S., Leongamornlert D.A., Leversha M., Lloyd C., Lloyd D.M., Lovell J., Martin S., Mashreghi-Mohammadi M., Matthews L., McLaren S., McLay K.E., McMurray A., Milne S., Nickerson T., Nisbett J., Nordsiek G., Pearce A.V., Peck A.I., Porter K.M., Pandian R., Pelan S., Phillimore B., Povey S., Ramsey Y., Rand V., Scharfe M., Sehra H.K., Shownkeen R., Sims S.K., Skuce C.D., Smith M., Steward C.A., Swarbreck D., Sycamore N., Tester J., Thorpe A., Tracey A., Tromans A., Thomas D.W., Wall M., Wallis J.M., West A.P., Whitehead S.L., Willey D.L., Williams S.A., Wilming L., Wray P.W., Young L., Ashurst J.L., Coulson A., Blocker H., Durbin R.M., Sulston J.E., Hubbard T., Jackson M.J., Bentley D.R., Beck S., Rogers J., Dunham I.
Nature 429:369-374(2004) [PubMed: 15164053] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], VARIANT TRP-8.
[9]Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. expand/collapse author list , Yooseph S., Lu F., Nusskern D.R., Shue B.C., Zheng X.H., Zhong F., Delcher A.L., Huson D.H., Kravitz S.A., Mouchard L., Reinert K., Remington K.A., Clark A.G., Waterman M.S., Eichler E.E., Adams M.D., Hunkapiller M.W., Myers E.W., Venter J.C.
Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[10]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM LONG).
Tissue: Brain.
[11]"Arachidonate lipoxygenase (ALOX) and cyclooxygenase (COX) polymorphisms and colon cancer risk."
Goodman J.E., Bowman E.D., Chanock S.J., Alberg A.J., Harris C.C.
Carcinogenesis 25:2467-2472(2004) [PubMed: 15308583] [Abstract]
Cited for: VARIANTS MET-237 AND ILE-481.
+Additional computationally mapped references.

Web resources

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
M31822 expand/collapse EMBL AC list , M31812, M31813, M31814, M31815, M31816, M31817, M31818, M31819, M31820, M31821 Genomic DNA. Translation: AAA36439.1.
M59979 mRNA. Translation: AAA03630.1.
S78220 mRNA. Translation: AAB21215.1.
S36219 mRNA. Translation: AAB22216.1.
S36271 mRNA. Translation: AAB22217.1.
AF440204 Genomic DNA. Translation: AAL33601.1.
AY449688 Genomic DNA. Translation: AAR08907.1.
AK290022 mRNA. Translation: BAF82711.1.
AL162424, AL359636 Genomic DNA. Translation: CAI14714.1.
AL162424, AL359636 Genomic DNA. Translation: CAI14715.1.
AL162424 Genomic DNA. Translation: CAI14716.1. Sequence problems.
AL359636, AL162424 Genomic DNA. Translation: CAM45740.1.
AL359636, AL162424 Genomic DNA. Translation: CAM45741.1.
CH471090 Genomic DNA. Translation: EAW87530.1.
BC029840 mRNA. Translation: AAH29840.1.
IPIIPI00298267.
IPI00298268.
PIRJH0259.
RefSeqNP_000953.2.
NP_542158.1.
UniGeneHs.201978

3D structure databases

SMRP23219. Positions 31-583.
ModBaseSearch...

Protein-protein interaction databases

STRINGP23219.

Protein family/group databases

PeroxiBase3320. HsPGHS01.

Proteomic databases

PRIDEP23219.

Genome annotation databases

EnsemblENST00000362012; ENSP00000354612; ENSG00000095303; Homo sapiens. [Genome view]
GeneID5742.
KEGGhsa:5742.

Organism-specific databases

CTD5742.
GeneCardsGC09P124173.
H-InvDBHIX0008355.
HGNCHGNC:9604. PTGS1.
HPACAB020315.
HPA002834.
MIM176805. gene.
PharmGKBPA24346.
GenAtlasSearch...

Phylogenomic databases

eggNOGprNOG14984.
HOVERGENP23219.
InParanoidP23219.

Enzyme and pathway databases

BRENDA1.14.99.1. 247.
ReactomeREACT_13433. Biological oxidations.
REACT_15314. Hormone biosynthesis.
REACT_649. Phase 1 functionalization.

Gene expression databases

ArrayExpressP23219.
BgeeP23219.
CleanExHS_PTGS1.
GenevestigatorP23219.
GermOnlineENSG00000095303. Homo sapiens.

Family and domain databases

InterProIPR006210. EGF-like.
IPR000742. EGF_3.
IPR010255. Haem_peroxidase.
IPR002007. Haem_peroxidase_animal.
IPR019791. Haem_peroxidase_animal_sg.
[Graphical view]
Gene3DG3DSA:1.10.640.10. Haem_peroxidase_animal. 1 hit.
PfamPF03098. An_peroxidase. 2 hits.
[Graphical view]
PRINTSPR00457. ANPEROXIDASE.
SMARTSM00181. EGF. 1 hit.
[Graphical view]
PROSITEPS00022. EGF_1. False negative.
PS01186. EGF_2. False negative.
PS50026. EGF_3. 1 hit.
PS50292. PEROXIDASE_3. 1 hit.
[Graphical view]
ProtoNetSearch...

Other Resources

DrugBankDB00316. Acetaminophen.
DB00945. Aspirin.
DB01014. Balsalazide.
DB00963. Bromfenac.
DB01188. Ciclopirox.
DB00586. Diclofenac.
DB00861. Diflunisal.
DB04817. Dipyrone.
DB00749. Etodolac.
DB00573. Fenoprofen.
DB00712. Flurbiprofen.
DB00154. gamma-Homolinolenic acid.
DB01050. Ibuprofen.
DB00159. Icosapent.
DB00328. Indomethacin.
DB01009. Ketoprofen.
DB00465. Ketorolac.
DB01283. Lumiracoxib.
DB00939. Meclofenamic acid.
DB00784. Mefenamic acid.
DB00244. Mesalazine.
DB00350. Minoxidil.
DB00461. Nabumetone.
DB00788. Naproxen.
DB03783. Phenacetin.
DB00554. Piroxicam.
DB00533. Rofecoxib.
DB00936. Salicyclic acid.
DB01399. Salsalate.
DB00605. Sulindac.
DB00870. Suprofen.
DB00469. Tenoxicam.
DB00500. Tolmetin.
NextBio22352.
SOURCESearch...

Entry information

Entry namePGH1_HUMAN
AccessionPrimary (citable) accession number: P23219
Secondary accession number(s): A8K1V7 expand/collapse secondary AC list , Q15122, Q5T7T6, Q5T7T7, Q5T7T8
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1991
Last sequence update: November 1, 1991
Last modified: January 19, 2010
This is version 125 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHPI (Human Proteome Initiative)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Relevant documents

Human chromosome 9

Human chromosome 9: entries, gene names and cross-references to MIM

Human entries with polymorphisms or disease mutations

List of human entries with polymorphisms or disease mutations

Human polymorphisms and disease mutations

Index of human polymorphisms and disease mutations

MIM cross-references

Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot

PATHWAY comments

Index of metabolic and biosynthesis pathways

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Alternative products · Sequence annotation (Features) · Sequences · References · Web resources · Cross-references · Entry information · Relevant documents