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P22959 (CAPSD_TNVA) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 59. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length276 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 28 nm in diameter, and consisting of 180 capsid proteins.

Subunit structure

Homomultimer Potential.

Subcellular location

Virion Potential.

Sequence similarities

Belongs to the icosahedral plant coat protein family.

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 276276Capsid protein
PRO_0000222869

Regions

Region1 – 8585R domain, interaction with RNA
Region86 – 266181S domain, virion shell
Region267 – 27610P domain, projecting

Natural variations

Natural variant541R → Q.
Natural variant711G → A.
Natural variant1151I → T.
Natural variant1241S → G.
Natural variant1931L → S.
Natural variant2291S → G.

Sequences

Sequence LengthMass (Da)Tools
P22959 [UniParc].

Last modified August 1, 1991. Version 1.
Checksum: 44C505AE97F5892B

FASTA27629,784
        10         20         30         40         50         60 
MAGKKNNNNG QYIILRTPEQ QVEIDQRNAR RAQMGRMKKA RQPVQRYLQQ HGLRNGLSGR 

        70         80         90        100        110        120 
GGYIVAPTSG GVVTRPIVPK FSNRGDSTIV RNTEILNNQI LAALGAFNTT NSALIAAAPS 

       130        140        150        160        170        180 
WLASIADLYS KYRWLSCEII YIPKCPTTTS GSIAMAFTYD RNDAAPTARA QLSQSYKAIN 

       190        200        210        220        230        240 
FPPYAGYDGA AYLNSNQGAG SAIAVQLDVT KLDKPWYPTI SSAGFGALSV LDQNQFCPAS 

       250        260        270 
LVVASDGGPA TATPAGDLFI KYVIEFIEPI NPTMNV 

« Hide

References

[1]"Genome structure of tobacco necrosis virus strain A."
Meulewaeter F., Seurinck J., van Emmelo J.
Virology 177:699-709(1990) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
M33002 Genomic RNA. Translation: AAA86437.1.
PIRVCWQTN. D35523.
RefSeqNP_056828.1. NC_001777.1.

3D structure databases

ProteinModelPortalP22959.
SMRP22959. Positions 56-275.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID1493900.

Family and domain databases

Gene3D2.60.120.20. 1 hit.
InterProIPR000937. Capsid_prot_S-dom_vir.
IPR029053. Viral_coat.
[Graphical view]
PfamPF00729. Viral_coat. 1 hit.
[Graphical view]
PRINTSPR00233. ICOSAHEDRAL.
PROSITEPS00555. ICOSAH_VIR_COAT_S. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameCAPSD_TNVA
AccessionPrimary (citable) accession number: P22959
Entry history
Integrated into UniProtKB/Swiss-Prot: August 1, 1991
Last sequence update: August 1, 1991
Last modified: July 9, 2014
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families