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P22955 (CAPSD_RCNMV) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 56. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein attributes

Sequence length339 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 31-34 nm in diameter, and consisting of 180 capsid proteins.

Subunit structure

Homomultimer Potential.

Subcellular location

Virion Potential.

Sequence similarities

Belongs to the icosahedral plant coat protein family.

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 339339Capsid protein
PRO_0000222865

Regions

Region1 – 4646R domain, interaction with RNA
Region47 – 207161S domain, virion shell
Region208 – 339132P domain, projecting

Sequences

Sequence LengthMass (Da)Tools
P22955 [UniParc].

Last modified August 1, 1991. Version 1.
Checksum: 985DC663E6431AF0

FASTA33936,583
        10         20         30         40         50         60 
MSSKAPKKSK QRSQPRNRTP NTSVKTVAIP FAKTQIIKTV NPPPKPARGI LHTQLVMSVV 

        70         80         90        100        110        120 
GSVQMRTNNG KSNQRFRLNP SNPALFPTLA YEAANYDMYR LKKLTLRYVP LVTVQNSGRV 

       130        140        150        160        170        180 
AMIWDPDSQD SAPQSRQEIS AYSRSVSTAV YEKCSLTIPA DNQWRFVADN TTVDRKLVDF 

       190        200        210        220        230        240 
GQLLFVTHSG SDGIETGDIF LDCEVEFKGP QPTASIVQKT VIDLGGTLTS FEGPSYLMPP 

       250        260        270        280        290        300 
DAFITSSSFG LFVDVAGTYL LTLVVTCSTT GSVTVGGNST LVGDGRAAYG SSNYIASIVF 

       310        320        330 
TSSGVLSTTP SVQFSGSSGV SRVQMNICRC KQGNTFILG 

« Hide

References

[1]"The complete nucleotide sequence and genome organization of red clover necrotic mosaic virus RNA-1."
Xiong Z., Lommel S.A.
Virology 171:543-554(1989) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
Strain: Australian.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
J04357 Genomic RNA. Translation: AAB02542.1.
PIRC43684.
RefSeqNP_620526.1. NC_003756.1.

3D structure databases

ProteinModelPortalP22955.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID956632.

Family and domain databases

Gene3D2.60.120.20. 1 hit.
InterProIPR000937. Capsid_prot_S-dom_vir.
IPR029053. Viral_coat.
[Graphical view]
PfamPF00729. Viral_coat. 1 hit.
[Graphical view]
PRINTSPR00233. ICOSAHEDRAL.
PROSITEPS00555. ICOSAH_VIR_COAT_S. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameCAPSD_RCNMV
AccessionPrimary (citable) accession number: P22955
Entry history
Integrated into UniProtKB/Swiss-Prot: August 1, 1991
Last sequence update: August 1, 1991
Last modified: July 9, 2014
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families