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P22955

- CAPSD_RCNMV

UniProt

P22955 - CAPSD_RCNMV

Protein

Capsid protein

Gene

ORF2

Organism
Red clover necrotic mosaic virus (RCNMV)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 57 (01 Oct 2014)
      Sequence version 1 (01 Aug 1991)
      Previous versions | rss
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    Functioni

    Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 31-34 nm in diameter, and consisting of 180 capsid proteins.

    GO - Molecular functioni

    1. RNA binding Source: UniProtKB-KW
    2. structural molecule activity Source: InterPro

    Keywords - Ligandi

    RNA-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Capsid protein
    Alternative name(s):
    Coat protein
    Gene namesi
    ORF Names:ORF2
    OrganismiRed clover necrotic mosaic virus (RCNMV)
    Taxonomic identifieri12267 [NCBI]
    Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageTombusviridaeDianthovirus
    Virus hostiMedicago sativa (Alfalfa) [TaxID: 3879]
    Melilotus officinalis (Yellow sweet clover) (Trifolium officinale) [TaxID: 47083]
    Trifolium pratense (Red clover) [TaxID: 57577]
    Trifolium repens (Creeping white clover) [TaxID: 3899]
    ProteomesiUP000008651: Genome

    Subcellular locationi

    Virion Curated

    GO - Cellular componenti

    1. T=3 icosahedral viral capsid Source: UniProtKB-KW

    Keywords - Cellular componenti

    Capsid protein, T=3 icosahedral capsid protein, Virion

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 339339Capsid proteinPRO_0000222865Add
    BLAST

    Interactioni

    Subunit structurei

    Homomultimer.Curated

    Structurei

    3D structure databases

    ProteinModelPortaliP22955.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni1 – 4646R domain, interaction with RNAAdd
    BLAST
    Regioni47 – 207161S domain, virion shellAdd
    BLAST
    Regioni208 – 339132P domain, projectingAdd
    BLAST

    Sequence similaritiesi

    Family and domain databases

    Gene3Di2.60.120.20. 1 hit.
    InterProiIPR000937. Capsid_prot_S-dom_vir.
    IPR029053. Viral_coat.
    [Graphical view]
    PfamiPF00729. Viral_coat. 1 hit.
    [Graphical view]
    PRINTSiPR00233. ICOSAHEDRAL.
    PROSITEiPS00555. ICOSAH_VIR_COAT_S. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P22955-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSSKAPKKSK QRSQPRNRTP NTSVKTVAIP FAKTQIIKTV NPPPKPARGI    50
    LHTQLVMSVV GSVQMRTNNG KSNQRFRLNP SNPALFPTLA YEAANYDMYR 100
    LKKLTLRYVP LVTVQNSGRV AMIWDPDSQD SAPQSRQEIS AYSRSVSTAV 150
    YEKCSLTIPA DNQWRFVADN TTVDRKLVDF GQLLFVTHSG SDGIETGDIF 200
    LDCEVEFKGP QPTASIVQKT VIDLGGTLTS FEGPSYLMPP DAFITSSSFG 250
    LFVDVAGTYL LTLVVTCSTT GSVTVGGNST LVGDGRAAYG SSNYIASIVF 300
    TSSGVLSTTP SVQFSGSSGV SRVQMNICRC KQGNTFILG 339
    Length:339
    Mass (Da):36,583
    Last modified:August 1, 1991 - v1
    Checksum:i985DC663E6431AF0
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    J04357 Genomic RNA. Translation: AAB02542.1.
    PIRiC43684.
    RefSeqiNP_620526.1. NC_003756.1.

    Genome annotation databases

    GeneIDi956632.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    J04357 Genomic RNA. Translation: AAB02542.1 .
    PIRi C43684.
    RefSeqi NP_620526.1. NC_003756.1.

    3D structure databases

    ProteinModelPortali P22955.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 956632.

    Family and domain databases

    Gene3Di 2.60.120.20. 1 hit.
    InterProi IPR000937. Capsid_prot_S-dom_vir.
    IPR029053. Viral_coat.
    [Graphical view ]
    Pfami PF00729. Viral_coat. 1 hit.
    [Graphical view ]
    PRINTSi PR00233. ICOSAHEDRAL.
    PROSITEi PS00555. ICOSAH_VIR_COAT_S. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The complete nucleotide sequence and genome organization of red clover necrotic mosaic virus RNA-1."
      Xiong Z., Lommel S.A.
      Virology 171:543-554(1989) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
      Strain: Australian.

    Entry informationi

    Entry nameiCAPSD_RCNMV
    AccessioniPrimary (citable) accession number: P22955
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: August 1, 1991
    Last sequence update: August 1, 1991
    Last modified: October 1, 2014
    This is version 57 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programViral Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3