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P22955

- CAPSD_RCNMV

UniProt

P22955 - CAPSD_RCNMV

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Protein

Capsid protein

Gene
ORF2
Organism
Red clover necrotic mosaic virus (RCNMV)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 31-34 nm in diameter, and consisting of 180 capsid proteins.

GO - Molecular functioni

  1. RNA binding Source: UniProtKB-KW
  2. structural molecule activity Source: InterPro
Complete GO annotation...

Keywords - Ligandi

RNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Capsid protein
Alternative name(s):
Coat protein
Gene namesi
ORF Names:ORF2
OrganismiRed clover necrotic mosaic virus (RCNMV)
Taxonomic identifieri12267 [NCBI]
Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageTombusviridaeDianthovirus
Virus hostiMedicago sativa (Alfalfa) [TaxID: 3879]
Melilotus officinalis (Yellow sweet clover) (Trifolium officinale) [TaxID: 47083]
Trifolium pratense (Red clover) [TaxID: 57577]
Trifolium repens (Creeping white clover) [TaxID: 3899]
ProteomesiUP000008651: Genome

Subcellular locationi

Virion Reviewed prediction

GO - Cellular componenti

  1. T=3 icosahedral viral capsid Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Capsid protein, T=3 icosahedral capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 339339Capsid proteinPRO_0000222865Add
BLAST

Interactioni

Subunit structurei

Homomultimer Reviewed prediction.

Structurei

3D structure databases

ProteinModelPortaliP22955.

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni1 – 4646R domain, interaction with RNAAdd
BLAST
Regioni47 – 207161S domain, virion shellAdd
BLAST
Regioni208 – 339132P domain, projectingAdd
BLAST

Sequence similaritiesi

Family and domain databases

Gene3Di2.60.120.20. 1 hit.
InterProiIPR000937. Capsid_prot_S-dom_vir.
IPR029053. Viral_coat.
[Graphical view]
PfamiPF00729. Viral_coat. 1 hit.
[Graphical view]
PRINTSiPR00233. ICOSAHEDRAL.
PROSITEiPS00555. ICOSAH_VIR_COAT_S. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P22955-1 [UniParc]FASTAAdd to Basket

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MSSKAPKKSK QRSQPRNRTP NTSVKTVAIP FAKTQIIKTV NPPPKPARGI    50
LHTQLVMSVV GSVQMRTNNG KSNQRFRLNP SNPALFPTLA YEAANYDMYR 100
LKKLTLRYVP LVTVQNSGRV AMIWDPDSQD SAPQSRQEIS AYSRSVSTAV 150
YEKCSLTIPA DNQWRFVADN TTVDRKLVDF GQLLFVTHSG SDGIETGDIF 200
LDCEVEFKGP QPTASIVQKT VIDLGGTLTS FEGPSYLMPP DAFITSSSFG 250
LFVDVAGTYL LTLVVTCSTT GSVTVGGNST LVGDGRAAYG SSNYIASIVF 300
TSSGVLSTTP SVQFSGSSGV SRVQMNICRC KQGNTFILG 339
Length:339
Mass (Da):36,583
Last modified:August 1, 1991 - v1
Checksum:i985DC663E6431AF0
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
J04357 Genomic RNA. Translation: AAB02542.1.
PIRiC43684.
RefSeqiNP_620526.1. NC_003756.1.

Genome annotation databases

GeneIDi956632.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
J04357 Genomic RNA. Translation: AAB02542.1 .
PIRi C43684.
RefSeqi NP_620526.1. NC_003756.1.

3D structure databases

ProteinModelPortali P22955.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 956632.

Family and domain databases

Gene3Di 2.60.120.20. 1 hit.
InterProi IPR000937. Capsid_prot_S-dom_vir.
IPR029053. Viral_coat.
[Graphical view ]
Pfami PF00729. Viral_coat. 1 hit.
[Graphical view ]
PRINTSi PR00233. ICOSAHEDRAL.
PROSITEi PS00555. ICOSAH_VIR_COAT_S. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The complete nucleotide sequence and genome organization of red clover necrotic mosaic virus RNA-1."
    Xiong Z., Lommel S.A.
    Virology 171:543-554(1989) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
    Strain: Australian.

Entry informationi

Entry nameiCAPSD_RCNMV
AccessioniPrimary (citable) accession number: P22955
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 1, 1991
Last sequence update: August 1, 1991
Last modified: July 9, 2014
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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