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P22860

- RBS2_ALLVD

UniProt

P22860 - RBS2_ALLVD

Protein

Ribulose bisphosphate carboxylase small chain 2

Gene

cbbS2

Organism
Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) (Chromatium vinosum)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 83 (01 Oct 2014)
      Sequence version 2 (15 Jun 2010)
      Previous versions | rss
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    Functioni

    RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.

    Catalytic activityi

    2 3-phospho-D-glycerate + 2 H+ = D-ribulose 1,5-bisphosphate + CO2 + H2O.
    3-phospho-D-glycerate + 2-phosphoglycolate = D-ribulose 1,5-bisphosphate + O2.

    GO - Molecular functioni

    1. monooxygenase activity Source: UniProtKB-KW
    2. ribulose-bisphosphate carboxylase activity Source: UniProtKB-EC

    GO - Biological processi

    1. reductive pentose-phosphate cycle Source: UniProtKB-KW

    Keywords - Molecular functioni

    Lyase, Monooxygenase, Oxidoreductase

    Keywords - Biological processi

    Calvin cycle, Carbon dioxide fixation, Photosynthesis

    Enzyme and pathway databases

    BioCyciAVIN572477:GCJK-2811-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Ribulose bisphosphate carboxylase small chain 2 (EC:4.1.1.39)
    Short name:
    RuBisCO small subunit 2
    Gene namesi
    Name:cbbS2
    Synonyms:rbcS
    Ordered Locus Names:Alvin_2749
    OrganismiAllochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) (Chromatium vinosum)
    Taxonomic identifieri572477 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaChromatialesChromatiaceaeAllochromatium
    ProteomesiUP000001441: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 113113Ribulose bisphosphate carboxylase small chain 2PRO_0000198613Add
    BLAST

    Interactioni

    Subunit structurei

    8 large chains + 8 small chains.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the RuBisCO small chain family.Curated

    Phylogenomic databases

    HOGENOMiHOG000141332.
    KOiK01602.

    Family and domain databases

    Gene3Di3.30.190.10. 1 hit.
    InterProiIPR000894. RuBisCO_sc_dom.
    [Graphical view]
    PfamiPF00101. RuBisCO_small. 1 hit.
    [Graphical view]
    SMARTiSM00961. RuBisCO_small. 1 hit.
    [Graphical view]
    SUPFAMiSSF55239. SSF55239. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    P22860-1 [UniParc]FASTAAdd to Basket

    « Hide

    MNTASSMGDH ATIGRYETFS YLPPLNREEI LEQILYILDN GWNASLEHEH    50
    PDRAFEYYWP MWKMPFFGEQ DPNVILTEIE SCRRSYPDHH VRLVGYDTYA 100
    QSKGHSFLVH RAR 113
    Length:113
    Mass (Da):13,393
    Last modified:June 15, 2010 - v2
    Checksum:i00376BC870FF3399
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti109 – 1091V → A in BAA14230. (PubMed:1899846)Curated
    Sequence conflicti112 – 1121A → P in BAA14230. (PubMed:1899846)Curated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    D90204 Genomic DNA. Translation: BAA14230.1.
    CP001896 Genomic DNA. Translation: ADC63658.1.
    PIRiJQ0587. RKKRS2.
    RefSeqiWP_012971926.1. NC_013851.1.
    YP_003444690.1. NC_013851.1.

    Genome annotation databases

    EnsemblBacteriaiADC63658; ADC63658; Alvin_2749.
    GeneIDi8788138.
    KEGGialv:Alvin_2749.
    PATRICi31925278. VBIAllVin64954_2711.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    D90204 Genomic DNA. Translation: BAA14230.1 .
    CP001896 Genomic DNA. Translation: ADC63658.1 .
    PIRi JQ0587. RKKRS2.
    RefSeqi WP_012971926.1. NC_013851.1.
    YP_003444690.1. NC_013851.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADC63658 ; ADC63658 ; Alvin_2749 .
    GeneIDi 8788138.
    KEGGi alv:Alvin_2749.
    PATRICi 31925278. VBIAllVin64954_2711.

    Phylogenomic databases

    HOGENOMi HOG000141332.
    KOi K01602.

    Enzyme and pathway databases

    BioCyci AVIN572477:GCJK-2811-MONOMER.

    Family and domain databases

    Gene3Di 3.30.190.10. 1 hit.
    InterProi IPR000894. RuBisCO_sc_dom.
    [Graphical view ]
    Pfami PF00101. RuBisCO_small. 1 hit.
    [Graphical view ]
    SMARTi SM00961. RuBisCO_small. 1 hit.
    [Graphical view ]
    SUPFAMi SSF55239. SSF55239. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Sequence and expression of genes encoding the large and small subunits of ribulose 1,5-bisphosphate carboxylase/oxygenase from Chromatium vinosum."
      Kobayashi H., Viale A.M., Takabe T., Akazawa T., Wada K., Shinozaki K., Kobayashi K., Sugiura M.
      Gene 97:55-62(1991) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    2. "Complete sequence of chromosome of Allochromatium vinosum DSM 180."
      US DOE Joint Genome Institute
      Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Munk A.C., Detter J.C., Han C., Tapia R., Larimer F., Land M., Hauser L., Kyrpides N., Ivanova N., Zigann R., Dahl C., Woyke T.
      Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 17899 / DSM 180 / NBRC 103801 / D.
    3. "Distinct properties of Escherichia coli products of plant-type ribulose-1,5-bisphosphate carboxylase/oxygenase directed by two sets of genes from the photosynthetic bacterium Chromatium vinosum."
      Viale A.M., Kobayashi H., Akazawa T.
      J. Biol. Chem. 265:18386-18392(1990) [PubMed] [Europe PMC] [Abstract]
      Cited for: PROTEIN SEQUENCE OF 1-24.

    Entry informationi

    Entry nameiRBS2_ALLVD
    AccessioniPrimary (citable) accession number: P22860
    Secondary accession number(s): D3RQ47
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: August 1, 1991
    Last sequence update: June 15, 2010
    Last modified: October 1, 2014
    This is version 83 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Caution

    In C.vinosum two similar set of genes code for RuBisCO large and small chains: the RbcL-RbcS and the RbcA-RbcB sets. Under standard photoautotrophic culture conditions only the later set seems active, the former being probably cryptic.Curated

    Keywords - Technical termi

    Complete proteome, Direct protein sequencing, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3