P22579 (SIN3_YEAST) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 29, 2013.
Version 129.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Transcriptional regulatory protein SIN3 | ||||||
| Gene names |
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| Organism | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) [Reference proteome] | ||||||
| Taxonomic identifier | 559292 [NCBI] | ||||||
| Taxonomic lineage | Eukaryota › Fungi › Dikarya › Ascomycota › Saccharomycotina › Saccharomycetes › Saccharomycetales › Saccharomycetaceae › Saccharomyces › ![]() |
Protein attributes
| Sequence length | 1536 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Catalytic component of the RPD3 histone deacetylase complexes RPD3C(L) and RPD3C(S) responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. SIN3 has also a RPD3 independent function required for normal longevity. Ref.1 Ref.4 Ref.5 Ref.6 Ref.7 Ref.8 Ref.10 Ref.11 Ref.12 Ref.14 Ref.15 Ref.18 Ref.20 Ref.21 Ref.22 Ref.23 Ref.25 Ref.26 |
| Subunit structure | Component of the RPD3C(L) complex composed of at least ASH1, CTI6, DEP1, PHO23, RPD3, RXT2, RXT3, SAP30, SDS3, SIN3, UME1 and UME6. Component of the RPD3C(S) complex composed of at least EAF3, RCO1, RPD3, SIN3, and UME1. Interacts with ESS1 and STB1. Ref.8 Ref.9 Ref.13 Ref.15 Ref.17 Ref.24 Ref.25 |
| Subcellular location | |
| Miscellaneous | Present with 1660 molecules/cell in log phase SD medium. |
| Sequence similarities | Contains 3 PAH (paired amphipathic helix) domains. |
Ontologies
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| itself | 3 | EBI-17160,EBI-17160 | ||
| OPI1 | P21957 | 5 | EBI-17160,EBI-12555 | |
| RPD3 | P32561 | 11 | EBI-17160,EBI-15864 |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1536 | 1536 | Transcriptional regulatory protein SIN3 | PRO_0000121544 | |||||
Regions | |||||||||
| Domain | 217 – 287 | 71 | PAH 1 | ||||||
| Domain | 404 – 474 | 71 | PAH 2 | ||||||
| Domain | 656 – 727 | 72 | PAH 3 | ||||||
| Compositional bias | 480 – 519 | 40 | Gln-rich | ||||||
Amino acid modifications | |||||||||
| Modified residue | 137 | 1 | Phosphoserine Ref.29 | ||||||
| Modified residue | 294 | 1 | Phosphoserine Ref.29 | ||||||
| Modified residue | 303 | 1 | Phosphothreonine Ref.16 Ref.29 | ||||||
| Modified residue | 304 | 1 | Phosphothreonine Ref.27 Ref.29 | ||||||
| Modified residue | 308 | 1 | Phosphothreonine Ref.29 | ||||||
| Modified residue | 316 | 1 | Phosphoserine Ref.16 Ref.29 | ||||||
| Modified residue | 318 | 1 | Phosphoserine Ref.29 | ||||||
| Modified residue | 1046 | 1 | Phosphoserine Ref.29 | ||||||
| Modified residue | 1483 | 1 | Phosphoserine Ref.28 Ref.29 | ||||||
Experimental info | |||||||||
| Sequence conflict | 510 | 1 | Q → QAQ Ref.1 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "The Saccharomyces cerevisiae SIN3 gene, a negative regulator of HO, contains four paired amphipathic helix motifs." Wang H., Clark I., Nicholson P.R., Herskowitz I., Stillman D.J. Mol. Cell. Biol. 10:5927-5936(1990) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], FUNCTION. Strain: S288c / GRF88. |
| [2] | "The nucleotide sequence of Saccharomyces cerevisiae chromosome XV." Dujon B., Albermann K., Aldea M., Alexandraki D., Ansorge W., Arino J., Benes V., Bohn C., Bolotin-Fukuhara M., Bordonne R., Boyer J., Camasses A., Casamayor A., Casas C., Cheret G., Cziepluch C., Daignan-Fornier B., Dang V.-D. Kleine K.Nature 387:98-102(1997) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 96604 / S288c / FY1679. |
| [3] | Saccharomyces Genome Database Submitted (DEC-2009) to the EMBL/GenBank/DDBJ databases Cited for: GENOME REANNOTATION. Strain: ATCC 204508 / S288c. |
| [4] | "RPD1 (SIN3/UME4) is required for maximal activation and repression of diverse yeast genes." Vidal M., Strich R., Easton Esposito R., Gaber R.F. Mol. Cell. Biol. 11:6306-6316(1991) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION. |
| [5] | "The Saccharomyces cerevisiae GAM2/SIN3 protein plays a role in both activation and repression of transcription." Yoshimoto H., Ohmae M., Yamashita I. Mol. Gen. Genet. 233:327-330(1992) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION. |
| [6] | "Transcriptional repression in Saccharomyces cerevisiae by a SIN3-LexA fusion protein." Wang H., Stillman D.J. Mol. Cell. Biol. 13:1805-1814(1993) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION. |
| [7] | "Evidence that the transcriptional regulators SIN3 and RPD3, and a novel gene (SDS3) with similar functions, are involved in transcriptional silencing in S. cerevisiae." Vannier D., Balderes D., Shore D. Genetics 144:1343-1353(1996) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION. |
| [8] | "A large protein complex containing the yeast Sin3p and Rpd3p transcriptional regulators." Kasten M.M., Dorland S., Stillman D.J. Mol. Cell. Biol. 17:4852-4858(1997) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, IDENTIFICATION IN THE RPD3 COMPLEX. |
| [9] | "Identification of the Saccharomyces cerevisiae genes STB1-STB5 encoding Sin3p binding proteins." Kasten M.M., Stillman D.J. Mol. Gen. Genet. 256:376-386(1997) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH STB1. |
| [10] | "Targeted recruitment of the Sin3-Rpd3 histone deacetylase complex generates a highly localized domain of repressed chromatin in vivo." Kadosh D., Struhl K. Mol. Cell. Biol. 18:5121-5127(1998) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION OF THE RPD3 COMPLEX. |
| [11] | "Transcriptional repression by UME6 involves deacetylation of lysine 5 of histone H4 by RPD3." Rundlett S.E., Carmen A.A., Suka N., Turner B.M., Grunstein M. Nature 392:831-835(1998) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION. |
| [12] | "A general requirement for the Sin3-Rpd3 histone deacetylase complex in regulating silencing in Saccharomyces cerevisiae." Sun Z.-W., Hampsey M. Genetics 152:921-932(1999) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION OF THE RPD3 COMPLEX. |
| [13] | "Cyclophilin A and Ess1 interact with and regulate silencing by the Sin3-Rpd3 histone deacetylase." Arevalo-Rodriguez M., Cardenas M.E., Wu X., Hanes S.D., Heitman J. EMBO J. 19:3739-3749(2000) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH ESS1. |
| [14] | "Combinatorial regulation of phospholipid biosynthetic gene expression by the UME6, SIN3 and RPD3 genes." Elkhaimi M., Kaadige M.R., Kamath D., Jackson J.C., Biliran H. Jr., Lopes J.M. Nucleic Acids Res. 28:3160-3167(2000) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION. |
| [15] | "Identification of the Sin3-binding site in Ume6 defines a two-step process for conversion of Ume6 from a transcriptional repressor to an activator in yeast." Washburn B.K., Easton Esposito R. Mol. Cell. Biol. 21:2057-2069(2001) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, INTERACTION WITH UME6. |
| [16] | "Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae." Ficarro S.B., McCleland M.L., Stukenberg P.T., Burke D.J., Ross M.M., Shabanowitz J., Hunt D.F., White F.M. Nat. Biotechnol. 20:301-305(2002) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-303 AND SER-316, MASS SPECTROMETRY. Strain: 2124. |
| [17] | "Opposite role of yeast ING family members in p53-dependent transcriptional activation." Nourani A., Howe L., Pray-Grant M.G., Workman J.L., Grant P.A., Cote J. J. Biol. Chem. 278:19171-19175(2003) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION IN THE RPD3 COMPLEX, MASS SPECTROMETRY. |
| [18] | "Loss of Sin3/Rpd3 histone deacetylase restores the DNA damage response in checkpoint-deficient strains of Saccharomyces cerevisiae." Scott K.L., Plon S.E. Mol. Cell. Biol. 23:4522-4531(2003) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION OF THE RPD3 COMPLEX. |
| [19] | "Global analysis of protein expression in yeast." Ghaemmaghami S., Huh W.-K., Bower K., Howson R.W., Belle A., Dephoure N., O'Shea E.K., Weissman J.S. Nature 425:737-741(2003) [PubMed] [Europe PMC] [Abstract] Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS]. |
| [20] | "The unfolded protein response represses differentiation through the RPD3-SIN3 histone deacetylase." Schroeder M., Clark R., Liu C.Y., Kaufman R.J. EMBO J. 23:2281-2292(2004) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION OF THE RPD3 COMPLEX. |
| [21] | "The Rpd3-Sin3 histone deacetylase regulates replication timing and enables intra-S origin control in Saccharomyces cerevisiae." Aparicio J.G., Viggiani C.J., Gibson D.G., Aparicio O.M. Mol. Cell. Biol. 24:4769-4780(2004) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION. |
| [22] | "The MAPK Hog1 recruits Rpd3 histone deacetylase to activate osmoresponsive genes." De Nadal E., Zapater M., Alepuz P.M., Sumoy L., Mas G., Posas F. Nature 427:370-374(2004) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION OF THE RPD3 COMPLEX. |
| [23] | "Saccharomyces cerevisiae Sin3p facilitates DNA double-strand break repair." Jazayeri A., McAinsh A.D., Jackson S.P. Proc. Natl. Acad. Sci. U.S.A. 101:1644-1649(2004) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION OF THE RPD3 COMPLEX. |
| [24] | "Stable incorporation of sequence specific repressors Ash1 and Ume6 into the Rpd3L complex." Carrozza M.J., Florens L., Swanson S.K., Shia W.-J., Anderson S., Yates J., Washburn M.P., Workman J.L. Biochim. Biophys. Acta 1731:77-87(2005) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION IN THE RPD3C(L) COMPLEX, MASS SPECTROMETRY. |
| [25] | "Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex." Keogh M.-C., Kurdistani S.K., Morris S.A., Ahn S.H., Podolny V., Collins S.R., Schuldiner M., Chin K., Punna T., Thompson N.J., Boone C., Emili A., Weissman J.S., Hughes T.R., Strahl B.D., Grunstein M., Greenblatt J.F., Buratowski S., Krogan N.J. Cell 123:593-605(2005) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION IN THE RPD3C(L) AND RPD3C(S) COMPLEXES, MASS SPECTROMETRY, FUNCTION OF THE RPD3C(S) COMPLEX. |
| [26] | "Genes determining yeast replicative life span in a long-lived genetic background." Kaeberlein M., Kirkland K.T., Fields S., Kennedy B.K. Mech. Ageing Dev. 126:491-504(2005) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION. |
| [27] | "Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae." Li X., Gerber S.A., Rudner A.D., Beausoleil S.A., Haas W., Villen J., Elias J.E., Gygi S.P. J. Proteome Res. 6:1190-1197(2007) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-304, MASS SPECTROMETRY. Strain: ADR376. |
| [28] | "Proteome-wide identification of in vivo targets of DNA damage checkpoint kinases." Smolka M.B., Albuquerque C.P., Chen S.H., Zhou H. Proc. Natl. Acad. Sci. U.S.A. 104:10364-10369(2007) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1483, MASS SPECTROMETRY. |
| [29] | "A multidimensional chromatography technology for in-depth phosphoproteome analysis." Albuquerque C.P., Smolka M.B., Payne S.H., Bafna V., Eng J., Zhou H. Mol. Cell. Proteomics 7:1389-1396(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-137; SER-294; THR-303; THR-304; THR-308; SER-316; SER-318; SER-1046 AND SER-1483, MASS SPECTROMETRY. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | M36822 Genomic DNA. Translation: AAA34839.1. Z74746 Genomic DNA. Translation: CAA99003.1. BK006948 Genomic DNA. Translation: DAA10779.1. |
| PIR | RGBYS3. S66686. |
| RefSeq | NP_014639.1. NM_001183258.1. |
3D structure databases | |
| ProteinModelPortal | P22579. |
| SMR | P22579. Positions 219-287, 401-474, 665-728. |
| ModBase | Search... |
Protein-protein interaction databases | |
| DIP | DIP-597N. |
| IntAct | P22579. 84 interactions. |
| MINT | MINT-422975. |
| STRING | 4932.YOL004W. |
Proteomic databases | |
| PaxDb | P22579. |
| PeptideAtlas | P22579. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| EnsemblFungi | YOL004W; YOL004W; YOL004W. |
| GeneID | 854158. |
| KEGG | sce:YOL004W. |
Organism-specific databases | |
| CYGD | YOL004w. |
| SGD | S000005364. SIN3. |
Phylogenomic databases | |
| eggNOG | COG5602. |
| GeneTree | ENSGT00390000007239. |
| HOGENOM | HOG000248545. |
| KO | K11644. |
| OMA | NDEWASH. |
| OrthoDB | EOG4X3M8D. |
Enzyme and pathway databases | |
| BioCyc | YEAST:G3O-33421-MONOMER. |
Gene expression databases | |
| Genevestigator | P22579. |
| GermOnline | YOL004W. Saccharomyces cerevisiae. |
Family and domain databases | |
| Gene3D | 1.20.1160.11. 3 hits. |
| InterPro | IPR013194. HDAC_interact. IPR003822. PAH. [Graphical view] |
| Pfam | PF02671. PAH. 3 hits. PF08295. Sin3_corepress. 1 hit. [Graphical view] |
| SMART | SM00761. HDAC_interact. 1 hit. [Graphical view] |
| SUPFAM | SSF47762. PAH. 3 hits. |
| PROSITE | PS51477. PAH. 3 hits. [Graphical view] |
| ProtoNet | Search... |
Other | |
| NextBio | 975926. |
Entry information
| Entry name | SIN3_YEAST | ||||||||
| Accession | Primary (citable) accession number: P22579 Secondary accession number(s): D6W263, Q08049 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Fungal Protein Annotation Program | ||||||||
Relevant documents
| Yeast Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD |
| Yeast chromosome XV Yeast (Saccharomyces cerevisiae) chromosome XV: entries and gene names |
| SIMILARITY comments Index of protein domains and families |

Clusters with
