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P22452

- RL39_HALMA

UniProt

P22452 - RL39_HALMA

Protein

50S ribosomal protein L39e

Gene

rpl39e

Organism
Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli
  1. Functioni

    Binds to the 23S rRNA. Forms part of the polypeptide exit tunnel.

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-KW
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Enzyme and pathway databases

    BioCyciHMAR272569:GJDH-2791-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L39e
    Alternative name(s):
    Hl39e
    Hl46e
    Gene namesi
    Name:rpl39e
    Ordered Locus Names:rrnAC3112
    OrganismiHaloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)
    Taxonomic identifieri272569 [NCBI]
    Taxonomic lineageiArchaeaEuryarchaeotaHalobacteriaHalobacterialesHalobacteriaceaeHaloarcula
    ProteomesiUP000001169: Chromosome I

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11Removed1 Publication
    Chaini2 – 504950S ribosomal protein L39ePRO_0000127047Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit. Interacts weakly with protein L23.2 Publications

    Protein-protein interaction databases

    STRINGi272569.rrnAC3112.

    Structurei

    Secondary structure

    1
    50
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Helixi6 – 1813
    Helixi24 – 296
    Turni30 – 323
    Turni43 – 453

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1FFKX-ray2.40Y2-50[»]
    1JJ2X-ray2.4012-49[»]
    1K73X-ray3.0132-49[»]
    1K8AX-ray3.0032-49[»]
    1K9MX-ray3.0032-49[»]
    1KC8X-ray3.0132-49[»]
    1KD1X-ray3.0032-49[»]
    1KQSX-ray3.1012-49[»]
    1M1KX-ray3.2032-49[»]
    1M90X-ray2.8032-49[»]
    1N8RX-ray3.0032-49[»]
    1NJIX-ray3.0032-49[»]
    1Q7YX-ray3.2032-49[»]
    1Q81X-ray2.9532-49[»]
    1Q82X-ray2.9832-49[»]
    1Q86X-ray3.0032-49[»]
    1QVFX-ray3.1012-49[»]
    1QVGX-ray2.9012-49[»]
    1S72X-ray2.4021-50[»]
    1VQ4X-ray2.7021-50[»]
    1VQ5X-ray2.6021-50[»]
    1VQ6X-ray2.7021-50[»]
    1VQ7X-ray2.5021-50[»]
    1VQ8X-ray2.2021-50[»]
    1VQ9X-ray2.4021-50[»]
    1VQKX-ray2.3021-50[»]
    1VQLX-ray2.3021-50[»]
    1VQMX-ray2.3021-50[»]
    1VQNX-ray2.4021-50[»]
    1VQOX-ray2.2021-50[»]
    1VQPX-ray2.2521-50[»]
    1W2BX-ray3.5012-49[»]
    1YHQX-ray2.4021-50[»]
    1YI2X-ray2.6521-50[»]
    1YIJX-ray2.6021-50[»]
    1YITX-ray2.8021-50[»]
    1YJ9X-ray2.9021-50[»]
    1YJNX-ray3.0021-50[»]
    1YJWX-ray2.9021-50[»]
    2OTJX-ray2.9021-50[»]
    2OTLX-ray2.7021-50[»]
    2QA4X-ray3.0021-50[»]
    2QEXX-ray2.9021-50[»]
    3CC2X-ray2.4021-50[»]
    3CC4X-ray2.7021-50[»]
    3CC7X-ray2.7021-50[»]
    3CCEX-ray2.7521-50[»]
    3CCJX-ray2.7021-50[»]
    3CCLX-ray2.9021-50[»]
    3CCMX-ray2.5521-50[»]
    3CCQX-ray2.9021-50[»]
    3CCRX-ray3.0021-50[»]
    3CCSX-ray2.9521-50[»]
    3CCUX-ray2.8021-50[»]
    3CCVX-ray2.9021-50[»]
    3CD6X-ray2.7521-50[»]
    3CMAX-ray2.8021-50[»]
    3CMEX-ray2.9521-50[»]
    3CPWX-ray2.7011-50[»]
    3CXCX-ray3.0012-50[»]
    3G4SX-ray3.2021-50[»]
    3G6EX-ray2.7021-50[»]
    3G71X-ray2.8521-50[»]
    3I55X-ray3.1121-50[»]
    3I56X-ray2.9021-50[»]
    3OW2X-ray2.7012-50[»]
    4ADXelectron microscopy6.6021-50[»]
    4HUBX-ray2.4021-50[»]
    ProteinModelPortaliP22452.
    SMRiP22452. Positions 2-50.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiP22452.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L39e family.Curated

    Phylogenomic databases

    eggNOGiCOG2167.
    HOGENOMiHOG000230627.
    KOiK02924.
    OMAiPAWVIMK.

    Family and domain databases

    Gene3Di1.10.1620.10. 1 hit.
    HAMAPiMF_00629. Ribosomal_L39e.
    InterProiIPR000077. Ribosomal_L39.
    IPR020083. Ribosomal_L39_CS.
    IPR023626. Ribosomal_L39e_dom.
    [Graphical view]
    PANTHERiPTHR19970. PTHR19970. 1 hit.
    PfamiPF00832. Ribosomal_L39. 1 hit.
    [Graphical view]
    SUPFAMiSSF48662. SSF48662. 1 hit.
    PROSITEiPS00051. RIBOSOMAL_L39E. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P22452-1 [UniParc]FASTAAdd to Basket

    « Hide

    MGKKSKATKK RLAKLDNQNS RVPAWVMLKT DREVQRNHKR RHWRRNDTDE   50
    Length:50
    Mass (Da):6,115
    Last modified:January 23, 2007 - v2
    Checksum:i4999D410AB7B331A
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X55007 Genomic DNA. Translation: CAA38750.1.
    AY596297 Genomic DNA. Translation: AAV47823.1.
    PIRiS13066. R6HS39.
    RefSeqiYP_137529.1. NC_006396.1.

    Genome annotation databases

    EnsemblBacteriaiAAV47823; AAV47823; rrnAC3112.
    GeneIDi3130549.
    KEGGihma:rrnAC3112.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X55007 Genomic DNA. Translation: CAA38750.1 .
    AY596297 Genomic DNA. Translation: AAV47823.1 .
    PIRi S13066. R6HS39.
    RefSeqi YP_137529.1. NC_006396.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1FFK X-ray 2.40 Y 2-50 [» ]
    1JJ2 X-ray 2.40 1 2-49 [» ]
    1K73 X-ray 3.01 3 2-49 [» ]
    1K8A X-ray 3.00 3 2-49 [» ]
    1K9M X-ray 3.00 3 2-49 [» ]
    1KC8 X-ray 3.01 3 2-49 [» ]
    1KD1 X-ray 3.00 3 2-49 [» ]
    1KQS X-ray 3.10 1 2-49 [» ]
    1M1K X-ray 3.20 3 2-49 [» ]
    1M90 X-ray 2.80 3 2-49 [» ]
    1N8R X-ray 3.00 3 2-49 [» ]
    1NJI X-ray 3.00 3 2-49 [» ]
    1Q7Y X-ray 3.20 3 2-49 [» ]
    1Q81 X-ray 2.95 3 2-49 [» ]
    1Q82 X-ray 2.98 3 2-49 [» ]
    1Q86 X-ray 3.00 3 2-49 [» ]
    1QVF X-ray 3.10 1 2-49 [» ]
    1QVG X-ray 2.90 1 2-49 [» ]
    1S72 X-ray 2.40 2 1-50 [» ]
    1VQ4 X-ray 2.70 2 1-50 [» ]
    1VQ5 X-ray 2.60 2 1-50 [» ]
    1VQ6 X-ray 2.70 2 1-50 [» ]
    1VQ7 X-ray 2.50 2 1-50 [» ]
    1VQ8 X-ray 2.20 2 1-50 [» ]
    1VQ9 X-ray 2.40 2 1-50 [» ]
    1VQK X-ray 2.30 2 1-50 [» ]
    1VQL X-ray 2.30 2 1-50 [» ]
    1VQM X-ray 2.30 2 1-50 [» ]
    1VQN X-ray 2.40 2 1-50 [» ]
    1VQO X-ray 2.20 2 1-50 [» ]
    1VQP X-ray 2.25 2 1-50 [» ]
    1W2B X-ray 3.50 1 2-49 [» ]
    1YHQ X-ray 2.40 2 1-50 [» ]
    1YI2 X-ray 2.65 2 1-50 [» ]
    1YIJ X-ray 2.60 2 1-50 [» ]
    1YIT X-ray 2.80 2 1-50 [» ]
    1YJ9 X-ray 2.90 2 1-50 [» ]
    1YJN X-ray 3.00 2 1-50 [» ]
    1YJW X-ray 2.90 2 1-50 [» ]
    2OTJ X-ray 2.90 2 1-50 [» ]
    2OTL X-ray 2.70 2 1-50 [» ]
    2QA4 X-ray 3.00 2 1-50 [» ]
    2QEX X-ray 2.90 2 1-50 [» ]
    3CC2 X-ray 2.40 2 1-50 [» ]
    3CC4 X-ray 2.70 2 1-50 [» ]
    3CC7 X-ray 2.70 2 1-50 [» ]
    3CCE X-ray 2.75 2 1-50 [» ]
    3CCJ X-ray 2.70 2 1-50 [» ]
    3CCL X-ray 2.90 2 1-50 [» ]
    3CCM X-ray 2.55 2 1-50 [» ]
    3CCQ X-ray 2.90 2 1-50 [» ]
    3CCR X-ray 3.00 2 1-50 [» ]
    3CCS X-ray 2.95 2 1-50 [» ]
    3CCU X-ray 2.80 2 1-50 [» ]
    3CCV X-ray 2.90 2 1-50 [» ]
    3CD6 X-ray 2.75 2 1-50 [» ]
    3CMA X-ray 2.80 2 1-50 [» ]
    3CME X-ray 2.95 2 1-50 [» ]
    3CPW X-ray 2.70 1 1-50 [» ]
    3CXC X-ray 3.00 1 2-50 [» ]
    3G4S X-ray 3.20 2 1-50 [» ]
    3G6E X-ray 2.70 2 1-50 [» ]
    3G71 X-ray 2.85 2 1-50 [» ]
    3I55 X-ray 3.11 2 1-50 [» ]
    3I56 X-ray 2.90 2 1-50 [» ]
    3OW2 X-ray 2.70 1 2-50 [» ]
    4ADX electron microscopy 6.60 2 1-50 [» ]
    4HUB X-ray 2.40 2 1-50 [» ]
    ProteinModelPortali P22452.
    SMRi P22452. Positions 2-50.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 272569.rrnAC3112.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAV47823 ; AAV47823 ; rrnAC3112 .
    GeneIDi 3130549.
    KEGGi hma:rrnAC3112.

    Phylogenomic databases

    eggNOGi COG2167.
    HOGENOMi HOG000230627.
    KOi K02924.
    OMAi PAWVIMK.

    Enzyme and pathway databases

    BioCyci HMAR272569:GJDH-2791-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei P22452.

    Family and domain databases

    Gene3Di 1.10.1620.10. 1 hit.
    HAMAPi MF_00629. Ribosomal_L39e.
    InterProi IPR000077. Ribosomal_L39.
    IPR020083. Ribosomal_L39_CS.
    IPR023626. Ribosomal_L39e_dom.
    [Graphical view ]
    PANTHERi PTHR19970. PTHR19970. 1 hit.
    Pfami PF00832. Ribosomal_L39. 1 hit.
    [Graphical view ]
    SUPFAMi SSF48662. SSF48662. 1 hit.
    PROSITEi PS00051. RIBOSOMAL_L39E. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Evidence for an additional archaebacterial gene cluster in Halobacterium marismortui encoding ribosomal proteins HL46e and HL30."
      Bergmann U., Arndt E.
      Biochim. Biophys. Acta 1050:56-60(1990) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], PROTEIN SEQUENCE OF 2-50.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809.
    3. "The complete atomic structure of the large ribosomal subunit at 2.4 A resolution."
      Ban N., Nissen P., Hansen J., Moore P.B., Steitz T.A.
      Science 289:905-920(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (2.4 ANGSTROMS) OF THE 50S SUBUNIT.
      Strain: ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809.
    4. "The structural basis of ribosome activity in peptide bond synthesis."
      Nissen P., Hansen J., Ban N., Moore P.B., Steitz T.A.
      Science 289:920-930(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (3.0 ANGSTROMS) OF THE 50S SUBUNIT.
      Strain: ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809.
    5. "A pre-translocational intermediate in protein synthesis observed in crystals of enzymatically active 50S subunits."
      Schmeing T.M., Seila A.C., Hansen J.L., Freeborn B., Soukup J.K., Scaringe S.A., Strobel S.A., Moore P.B., Steitz T.A.
      Nat. Struct. Biol. 9:225-230(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (3.1 ANGSTROMS) OF THE 50S SUBUNIT.
      Strain: ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809.
    6. "The kink-turn: a new RNA secondary structure motif."
      Klein D.J., Schmeing T.M., Moore P.B., Steitz T.A.
      EMBO J. 20:4214-4221(2001) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (2.4 ANGSTROMS) OF THE 50S SUBUNIT.
      Strain: ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809.
    7. "The structures of four macrolide antibiotics bound to the large ribosomal subunit."
      Hansen J.L., Ippolito J.A., Ban N., Nissen P., Moore P.B., Steitz T.A.
      Mol. Cell 10:117-128(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (3.0 ANGSTROMS) OF THE 50S SUBUNIT IN COMPLEX WITH FOUR MACROLIDE ANTIBIOTICS.
      Strain: ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809.
    8. Cited for: X-RAY CRYSTALLOGRAPHY (2.8 ANGSTROMS) OF THE 50S SUBUNIT.
      Strain: ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809.
    9. "Structures of five antibiotics bound at the peptidyl transferase center of the large ribosomal subunit."
      Hansen J.L., Moore P.B., Steitz T.A.
      J. Mol. Biol. 330:1061-1075(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (3.0 ANGSTROMS) OF THE 50S SUBUNIT IN COMPLEX WITH FIVE ANTIBIOTICS AT THE PEPTIDYL TRANSFERASE CENTER.
      Strain: ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809.
    10. "Structures of deacylated tRNA mimics bound to the E site of the large ribosomal subunit."
      Schmeing T.M., Moore P.B., Steitz T.A.
      RNA 9:1345-1352(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (2.9 ANGSTROMS) OF THE 50S SUBUNIT WITH TWO DIFFERENT E SITE SUBSTRATES.
    11. "Revisiting the Haloarcula marismortui 50S ribosomal subunit model."
      Gabdulkhakov A., Nikonov S., Garber M.
      Acta Crystallogr. D 69:997-1004(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (2.4 ANGSTROMS) OF THE 50S SUBUNIT.

    Entry informationi

    Entry nameiRL39_HALMA
    AccessioniPrimary (citable) accession number: P22452
    Secondary accession number(s): Q5UY30
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: August 1, 1991
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 107 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3