P22314 (UBA1_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 140.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Ubiquitin-like modifier-activating enzyme 1 Alternative name(s): Protein A1S9 Ubiquitin-activating enzyme E1 | ||||
| Gene names |
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| Organism | Homo sapiens (Human) | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 1058 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Activates ubiquitin by first adenylating its C-terminal glycine residue with ATP, and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thioester and free AMP. |
| Pathway | |
| Subunit structure | Monomer By similarity. Interacts with GAN (via BTB domain). Ref.12 |
| Post-translational modification | ISGylated. Ref.10 |
| Involvement in disease | Defects in UBA1 are the cause of spinal muscular atrophy X-linked type 2 (SMAX2) [MIM:301830]; also known as X-linked lethal infantile spinal muscular atrophy, distal X-linked arthrogryposis multiplex congenita or X-linked arthrogryposis type 1 (AMCX1). Spinal muscular atrophy refers to a group of neuromuscular disorders characterized by degeneration of the anterior horn cells of the spinal cord, leading to symmetrical muscle weakness and atrophy. SMAX2 is a lethal infantile form presenting with hypotonia, areflexia, and multiple congenital contractures. Ref.19 |
| Miscellaneous | There are two active sites within the E1 molecule, allowing it to accommodate two ubiquitin moieties at a time, with a new ubiquitin forming an adenylate intermediate as the previous one is transferred to the thiol site. |
| Sequence similarities | Belongs to the ubiquitin-activating E1 family. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Ubl conjugation pathway |
| Coding sequence diversity | Polymorphism |
| Disease | Disease mutation Neurodegeneration |
| Domain | Repeat |
| Ligand | ATP-binding Nucleotide-binding |
| Molecular function | Ligase |
| PTM | Acetylation Phosphoprotein Ubl conjugation |
| Technical term | Complete proteome Direct protein sequencing Reference proteome |
| Gene Ontology (GO) | |
| Biological process | cell death Inferred from electronic annotation. Source: UniProtKB-KW protein modification processInferred from electronic annotation. Source: InterPro |
| Molecular function | ATP binding Inferred from electronic annotation. Source: UniProtKB-KW ligase activityInferred from electronic annotation. Source: UniProtKB-KW protein bindingInferred from physical interaction Ref.12. Source: IntAct small protein activating enzyme activityInferred from electronic annotation. Source: InterPro |
| Complete GO annotation... | |
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| GAN | Q9H2C0 | 5 | EBI-709688,EBI-764342 | |
| UBE2I | P63279 | 2 | EBI-709688,EBI-80168 |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1058 | 1058 | Ubiquitin-like modifier-activating enzyme 1 | PRO_0000194934 | |||||
Regions | |||||||||
| Repeat | 63 – 199 | 137 | 1-1 | ||||||
| Repeat | 459 – 611 | 153 | 1-2 | ||||||
| Nucleotide binding | 478 – 507 | 30 | ATP By similarity | ||||||
| Region | 63 – 611 | 549 | 2 approximate repeats | ||||||
Sites | |||||||||
| Active site | 632 | 1 | Glycyl thioester intermediate By similarity | ||||||
Amino acid modifications | |||||||||
| Modified residue | 4 | 1 | Phosphoserine Ref.15 | ||||||
| Modified residue | 13 | 1 | Phosphoserine Ref.14 | ||||||
| Modified residue | 24 | 1 | Phosphoserine Ref.14 | ||||||
| Modified residue | 46 | 1 | Phosphoserine Ref.9 Ref.13 Ref.14 Ref.16 | ||||||
| Modified residue | 55 | 1 | Phosphotyrosine Ref.11 | ||||||
| Modified residue | 671 | 1 | N6-acetyllysine Ref.17 | ||||||
| Modified residue | 800 | 1 | Phosphothreonine Ref.14 | ||||||
| Modified residue | 810 | 1 | Phosphoserine Ref.16 | ||||||
| Modified residue | 835 | 1 | Phosphoserine Ref.14 Ref.15 | ||||||
| Modified residue | 980 | 1 | N6-acetyllysine Ref.17 | ||||||
Natural variations | |||||||||
| Natural variant | 447 | 1 | R → H. Corresponds to variant rs2070169 [ dbSNP | Ensembl ]. | VAR_043500 | |||||
| Natural variant | 539 | 1 | M → I in SMAX2. Ref.19 | VAR_043501 | |||||
| Natural variant | 547 | 1 | S → G in SMAX2. Ref.19 | VAR_043502 | |||||
Experimental info | |||||||||
| Sequence conflict | 190 | 1 | D → G in CAA40296. Ref.1 | ||||||
| Sequence conflict | 434 | 1 | E → Q in CAA40296. Ref.1 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Complementation by a cloned human ubiquitin-activating enzyme E1 of the S-phase-arrested mouse FM3A cell mutant with thermolabile E1." Ayusawa D., Kaneda S., Itoh Y., Yasuda H., Murakami Y., Sugasawa K., Hanaoka F., Seno T. Cell Struct. Funct. 17:113-122(1992) [PubMed: 1606621] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA]. |
| [2] | "Molecular cloning, sequence, and tissue distribution of the human ubiquitin-activating enzyme E1." Handley P.M., Mueckler M., Siegel N.R., Ciechanover A., Schwartz A.L. Proc. Natl. Acad. Sci. U.S.A. 88:258-262(1991) [PubMed: 1986373] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA], PROTEIN SEQUENCE OF 136-158; 369-383; 417-430 AND 559-580. Tissue: Placenta. |
| [3] | Erratum Handley P.M., Mueckler M., Siegel N.R., Ciechanover A., Schwartz A.L. Proc. Natl. Acad. Sci. U.S.A. 88:7456-7456(1991) [PubMed: 1871145] [Abstract] |
| [4] | "The DNA sequence of the human X chromosome." Ross M.T., Grafham D.V., Coffey A.J., Scherer S., McLay K., Muzny D., Platzer M., Howell G.R., Burrows C., Bird C.P., Frankish A., Lovell F.L., Howe K.L., Ashurst J.L., Fulton R.S., Sudbrak R., Wen G., Jones M.C. Bentley D.R.Nature 434:325-337(2005) [PubMed: 15772651] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [5] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [6] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Lymph. |
| [7] | "Molecular cloning, primary structure and expression of the human X linked A1S9 gene cDNA which complements the ts A1S9 mouse L cell defect in DNA replication." Zacksenhaus E., Sheinin R. EMBO J. 9:2923-2929(1990) [PubMed: 2390975] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 257-989. |
| [8] | Lubec G., Vishwanath V. Submitted (MAR-2007) to UniProtKB Cited for: PROTEIN SEQUENCE OF 559-581 AND 924-944, MASS SPECTROMETRY. Tissue: Brain and Cajal-Retzius cell. |
| [9] | "Large-scale characterization of HeLa cell nuclear phosphoproteins." Beausoleil S.A., Jedrychowski M., Schwartz D., Elias J.E., Villen J., Li J., Cohn M.A., Cantley L.C., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 101:12130-12135(2004) [PubMed: 15302935] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-46, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [10] | "Proteomic identification of proteins conjugated to ISG15 in mouse and human cells." Giannakopoulos N.V., Luo J.K., Papov V., Zou W., Lenschow D.J., Jacobs B.S., Borden E.C., Li J., Virgin H.W., Zhang D.E. Biochem. Biophys. Res. Commun. 336:496-506(2005) [PubMed: 16139798] [Abstract] Cited for: ISGYLATION. |
| [11] | "Immunoaffinity profiling of tyrosine phosphorylation in cancer cells." Rush J., Moritz A., Lee K.A., Guo A., Goss V.L., Spek E.J., Zhang H., Zha X.-M., Polakiewicz R.D., Comb M.J. Nat. Biotechnol. 23:94-101(2005) [PubMed: 15592455] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-55, MASS SPECTROMETRY. |
| [12] | "Gigaxonin-controlled degradation of MAP1B light chain is critical to neuronal survival." Allen E., Ding J., Wang W., Pramanik S., Chou J., Yau V., Yang Y. Nature 438:224-228(2005) [PubMed: 16227972] [Abstract] Cited for: INTERACTION WITH GAN. |
| [13] | "A probability-based approach for high-throughput protein phosphorylation analysis and site localization." Beausoleil S.A., Villen J., Gerber S.A., Rush J., Gygi S.P. Nat. Biotechnol. 24:1285-1292(2006) [PubMed: 16964243] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-46, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [14] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed: 18669648] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-13; SER-24; SER-46; THR-800 AND SER-835, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [15] | "Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach." Gauci S., Helbig A.O., Slijper M., Krijgsveld J., Heck A.J., Mohammed S. Anal. Chem. 81:4493-4501(2009) [PubMed: 19413330] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-4 AND SER-835, MASS SPECTROMETRY. Tissue: Embryonic kidney. |
| [16] | "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions." Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Sci. Signal. 2:RA46-RA46(2009) [PubMed: 19690332] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-46 AND SER-810, MASS SPECTROMETRY. Tissue: Leukemic T-cell. |
| [17] | "Lysine acetylation targets protein complexes and co-regulates major cellular functions." Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T., Olsen J.V., Mann M. Science 325:834-840(2009) [PubMed: 19608861] [Abstract] Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-671 AND LYS-980, MASS SPECTROMETRY. |
| [18] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed: 21269460] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [19] | "Rare missense and synonymous variants in UBE1 are associated with X-linked infantile spinal muscular atrophy." Ramser J., Ahearn M.E., Lenski C., Yariz K.O., Hellebrand H., von Rhein M., Clark R.D., Schmutzler R.K., Lichtner P., Hoffman E.P., Meindl A., Baumbach-Reardon L. Am. J. Hum. Genet. 82:188-193(2008) [PubMed: 18179898] [Abstract] Cited for: VARIANTS SMAX2 ILE-539 AND GLY-547. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | X56976 mRNA. Translation: CAA40296.1. M58028 mRNA. Translation: AAA61246.1. AL513366 Genomic DNA. Translation: CAI41708.1. CH471164 Genomic DNA. Translation: EAW59290.1. BC013041 mRNA. Translation: AAH13041.1. X52897 mRNA. Translation: CAA37078.1. |
| IPI | IPI00645078. |
| PIR | A38564. |
| RefSeq | NP_003325.2. NM_003334.3. NP_695012.1. NM_153280.2. |
| UniGene | Hs.533273. |
3D structure databases | |
| ProteinModelPortal | P22314. |
| SMR | P22314. Positions 47-1057. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | P22314. 18 interactions. |
| MINT | MINT-1130980. |
| STRING | P22314. |
PTM databases | |
| PhosphoSite | P22314. |
Polymorphism databases | |
| DMDM | 24418865. |
2D gel databases | |
| REPRODUCTION-2DPAGE | IPI00645078. |
Proteomic databases | |
| PeptideAtlas | P22314. |
| PRIDE | P22314. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000335972; ENSP00000338413; ENSG00000130985. ENST00000377351; ENSP00000366568; ENSG00000130985. |
| GeneID | 7317. |
| KEGG | hsa:7317. |
| UCSC | uc004dhj.2. human. |
Organism-specific databases | |
| CTD | 7317. |
| GeneCards | GC0XP047050. |
| H-InvDB | HIX0016757. |
| HGNC | HGNC:12469. UBA1. |
| HPA | CAB019435. HPA000289. |
| MIM | 301830. phenotype. 314370. gene. |
| neXtProt | NX_P22314. |
| Orphanet | 1145. X-linked distal arthrogryposis multiplex congenita. |
| PharmGKB | PA162407527. PA37119. |
| GenAtlas | Search... |
Phylogenomic databases | |
| HOGENOM | HBG356508. |
| HOVERGEN | HBG054199. |
| InParanoid | P22314. |
| OMA | ANGMAKN. |
| OrthoDB | EOG4QZ7K4. |
| PhylomeDB | P22314. |
Enzyme and pathway databases | |
| Reactome | REACT_6900. Immune System. |
Gene expression databases | |
| ArrayExpress | P22314. |
| Bgee | P22314. |
| CleanEx | HS_UBA1. |
| Genevestigator | P22314. |
| GermOnline | ENSG00000130985. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR009036. Molybdenum_cofac_synth_MoeB. IPR016040. NAD(P)-bd_dom. IPR000594. ThiF_NAD_FAD-bd. IPR018965. Ub-activating_enz_e1_C. IPR023280. Ub-like_act_enz_cat_cys_dom. IPR000127. UBact_repeat. IPR019572. Ubiquitin-activating_enzyme. IPR018075. UBQ-activ_enz_E1. IPR018074. UBQ-activ_enz_E1_AS. IPR000011. UBQ/SUMO-activ_enz_E1-like. [Graphical view] |
| Gene3D | G3DSA:3.40.50.720. NAD(P)-bd. 4 hits. G3DSA:1.10.3240.10. Ub-like_act_enz_cat_cys_dom. 1 hit. |
| KO | K03178. |
| Pfam | PF00899. ThiF. 2 hits. PF09358. UBA_e1_C. 1 hit. PF10585. UBA_e1_thiolCys. 1 hit. PF02134. UBACT. 2 hits. [Graphical view] |
| PRINTS | PR01849. UBIQUITINACT. |
| SMART | SM00985. UBA_e1_C. 1 hit. [Graphical view] |
| SUPFAM | SSF69572. MoeB. 2 hits. |
| TIGRFAMs | TIGR01408. Ube1. 1 hit. |
| PROSITE | PS00536. UBIQUITIN_ACTIVAT_1. 1 hit. PS00865. UBIQUITIN_ACTIVAT_2. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| NextBio | 28604. |
| SOURCE | Search... |
Entry information
| Entry name | UBA1_HUMAN | ||||||||
| Accession | Primary (citable) accession number: P22314 Secondary accession number(s): Q5JRR8, Q96E13 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome X Human chromosome X: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PATHWAY comments Index of metabolic and biosynthesis pathways |
| SIMILARITY comments Index of protein domains and families |

Clusters with