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P22307 (NLTP_HUMAN) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 139. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (6) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Non-specific lipid-transfer protein

Short name=NSL-TP
EC=2.3.1.176
Alternative name(s):
Propanoyl-CoA C-acyltransferase
SCP-chi
SCPX
Sterol carrier protein 2
Short name=SCP-2
Sterol carrier protein X
Short name=SCP-X
Gene names
Name:SCP2
OrganismHomo sapiens (Human)
Taxonomic identifier9606 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Protein attributes

Sequence length547 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Mediates in vitro the transfer of all common phospholipids, cholesterol and gangliosides between membranes. May play a role in regulating steroidogenesis. Ref.11 Ref.16

Catalytic activity

3-alpha,7-alpha,12-alpha-trihydroxy-5-beta-cholanoyl-CoA + propanoyl-CoA = CoA + 3-alpha,7-alpha,12-alpha-trihydroxy-24-oxo-5-beta-cholestanoyl-CoA.

Subunit structure

Interacts with PEX5.

Subcellular location

Cytoplasm. Mitochondrion. Note: Cytoplasmic in the liver and also associated with mitochondria especially in steroidogenic tissues. Ref.16

Isoform SCPx: Peroxisome. Note: Interaction with PEX5 is essential for peroxisomal import. Ref.16

Isoform SCP2: Mitochondrion Probable Ref.16.

Tissue specificity

Liver, fibroblasts, and placenta.

Induction

Up-regulated by 4-hydroxy-tamoxifen. Ref.9

Involvement in disease

Defects in SCP2 are a cause of leukoencephalopathy with dystonia and motor neuropathy (LDMN) [MIM:613724]; also known as sterol carrier protein 2 deficiency. LDMN is a syndrome characterized by leukoencephalopathy, dystonic head tremor, spasmodic torticollis and reduced tendon reflexes in lower extremities. Additional features include hyposmia, pathologic saccadic eye movements, a slight hypoacusis, accumulation of branched-chain pristanic acid in plasma, and the presence of abnormal bile alcohol glucuronides in urine. Ref.10

Sequence similarities

In the N-terminal section; belongs to the thiolase family.

Contains 1 SCP2 domain.

Sequence caution

The sequence AAA03558.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.

Binary interactions

With

Entry

#Exp.

IntAct

Notes

CAV1Q031353EBI-1050999,EBI-603614
Cav1P498173EBI-1050999,EBI-1161338From a different organism.

Alternative products

This entry describes 2 isoforms produced by alternative promoter usage. [Align] [Select]
Isoform SCPx (identifier: P22307-1)

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
Isoform SCP2 (identifier: P22307-2)

The sequence of this isoform differs from the canonical sequence as follows:
     1-404: Missing.
Note: Contains a mitochondrial transit peptide at positions 1-20 (Potential).

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 547547Non-specific lipid-transfer protein
PRO_0000034091

Regions

Domain433 – 543111SCP2
Motif545 – 5473Microbody targeting signal Potential

Amino acid modifications

Modified residue1321N6-acetyllysine Ref.13
Modified residue1421N6-acetyllysine By similarity
Modified residue1731N6-acetyllysine By similarity
Modified residue1831N6-acetyllysine Ref.13
Modified residue1971Phosphotyrosine Ref.12
Modified residue2041Phosphotyrosine Ref.12
Modified residue2821N6-acetyllysine By similarity
Modified residue3411N6-acetyllysine By similarity
Modified residue4251Phosphoserine By similarity
Modified residue4381N6-acetyllysine Ref.13
Modified residue4531N6-acetyllysine By similarity
Modified residue4701N6-acetyllysine Ref.13

Natural variations

Alternative sequence1 – 404404Missing in isoform SCP2.
VSP_018977
Natural variant1551A → D in a breast cancer sample; somatic mutation. Ref.17
VAR_035706

Experimental info

Mutagenesis5281N → D: Strongly reduces sterol carrier and phosphatidylcholine transfer activity; when associated with D-530. Ref.11
Mutagenesis5281N → I: Strongly reduces sterol carrier and phosphatidylcholine transfer activity. Ref.11
Mutagenesis5301G → D: Strongly reduces sterol carrier and phosphatidylcholine transfer activity; when associated with D-528. Ref.11
Sequence conflict101T → A in AAB41286. Ref.1
Sequence conflict3931G → D in AAB41286. Ref.1
Sequence conflict4721A → D in AAB24921. Ref.4
Sequence conflict4821K → Q in AAB24921. Ref.4
Sequence conflict5011D → A in AAB24921. Ref.4
Sequence conflict5221K → P in AAB24921. Ref.4

Secondary structure

...................... 547
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
Isoform SCPx [UniParc].

Last modified November 1, 1997. Version 2.
Checksum: 29F7551465C7143A

FASTA54758,994
        10         20         30         40         50         60 
MSSSPWEPAT LRRVFVVGVG MTKFVKPGAE NSRDYPDLAE EAGKKALADA QIPYSAVDQA 

        70         80         90        100        110        120 
CVGYVFGDST CGQRAIYHSL GMTGIPIINV NNNCATGSTA LFMARQLIQG GVAECVLALG 

       130        140        150        160        170        180 
FEKMSKGSLG IKFSDRTIPT DKHVDLLINK YGLSAHPVAP QMFGYAGKEH MEKYGTKIEH 

       190        200        210        220        230        240 
FAKIGWKNHK HSVNNPYSQF QDEYSLDEVM ASKEVFDFLT ILQCCPTSDG AAAAILASEA 

       250        260        270        280        290        300 
FVQKYGLQSK AVEILAQEMM TDLPSSFEEK SIIKMVGFDM SKEAARKCYE KSGLTPNDID 

       310        320        330        340        350        360 
VIELHDCFST NELLTYEALG LCPEGQGATL VDRGDNTYGG KWVINPSGGL ISKGHPLGAT 

       370        380        390        400        410        420 
GLAQCAELCW QLRGEAGKRQ VPGAKVALQH NLGIGGAVVV TLYKMGFPEA ASSFRTHQIE 

       430        440        450        460        470        480 
AVPTSSASDG FKANLVFKEI EKKLEEEGEQ FVKKIGGIFA FKVKDGPGGK EATWVVDVKN 

       490        500        510        520        530        540 
GKGSVLPNSD KKADCTITMA DSDFLALMTG KMNPQSAFFQ GKLKITGNMG LAMKLQNLQL 


QPGNAKL 

« Hide

Isoform SCP2 [UniParc].

Checksum: DE7FD93BB320BB30
Show »

FASTA14315,401

References

« Hide 'large scale' references
[1]"The structure of the human sterol carrier protein X/sterol carrier protein 2 gene (SCP2)."
Ohba T., Rennert H., Pfeifer S.M., He Z., Yamamoto R., Holt J.A., Billheimer J.T., Strauss J.F. III
Genomics 24:370-374(1994) [PubMed: 7698762] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] (ISOFORM SCPX).
Tissue: Liver.
[2]"cDNAs encoding members of a family of proteins related to human sterol carrier protein 2 and assignment of the gene to human chromosome 1 p21-pter."
He Z., Yamamoto R., Furth E.E., Schantz L.J., Naylor S.L., George H., Billheimer J.T., Strauss J.F. III
DNA Cell Biol. 10:559-569(1991) [PubMed: 1718316] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM SCPX).
Tissue: Liver.
[3]"Cloning and expression of a cDNA encoding human sterol carrier protein 2."
Yamamoto R., Kallen C.B., Babalola G.O., Rennert H., Billheimer J.T., Strauss J.F. III
Proc. Natl. Acad. Sci. U.S.A. 88:463-467(1991) [PubMed: 1703300] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM SCP2).
Tissue: Liver.
[4]"Localization of human sterol carrier protein 2 gene and cDNA expression in COS-7 cell."
Yamamoto R.
Hokkaido Igaku Zasshi 67:839-848(1992) [PubMed: 1483685] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM SCP2).
Tissue: Liver.
[5]"The DNA sequence and biological annotation of human chromosome 1."
Gregory S.G., Barlow K.F., McLay K.E., Kaul R., Swarbreck D., Dunham A., Scott C.E., Howe K.L., Woodfine K., Spencer C.C.A., Jones M.C., Gillson C., Searle S., Zhou Y., Kokocinski F., McDonald L., Evans R., Phillips K. expand/collapse author list , Atkinson A., Cooper R., Jones C., Hall R.E., Andrews T.D., Lloyd C., Ainscough R., Almeida J.P., Ambrose K.D., Anderson F., Andrew R.W., Ashwell R.I.S., Aubin K., Babbage A.K., Bagguley C.L., Bailey J., Beasley H., Bethel G., Bird C.P., Bray-Allen S., Brown J.Y., Brown A.J., Buckley D., Burton J., Bye J., Carder C., Chapman J.C., Clark S.Y., Clarke G., Clee C., Cobley V., Collier R.E., Corby N., Coville G.J., Davies J., Deadman R., Dunn M., Earthrowl M., Ellington A.G., Errington H., Frankish A., Frankland J., French L., Garner P., Garnett J., Gay L., Ghori M.R.J., Gibson R., Gilby L.M., Gillett W., Glithero R.J., Grafham D.V., Griffiths C., Griffiths-Jones S., Grocock R., Hammond S., Harrison E.S.I., Hart E., Haugen E., Heath P.D., Holmes S., Holt K., Howden P.J., Hunt A.R., Hunt S.E., Hunter G., Isherwood J., James R., Johnson C., Johnson D., Joy A., Kay M., Kershaw J.K., Kibukawa M., Kimberley A.M., King A., Knights A.J., Lad H., Laird G., Lawlor S., Leongamornlert D.A., Lloyd D.M., Loveland J., Lovell J., Lush M.J., Lyne R., Martin S., Mashreghi-Mohammadi M., Matthews L., Matthews N.S.W., McLaren S., Milne S., Mistry S., Moore M.J.F., Nickerson T., O'Dell C.N., Oliver K., Palmeiri A., Palmer S.A., Parker A., Patel D., Pearce A.V., Peck A.I., Pelan S., Phelps K., Phillimore B.J., Plumb R., Rajan J., Raymond C., Rouse G., Saenphimmachak C., Sehra H.K., Sheridan E., Shownkeen R., Sims S., Skuce C.D., Smith M., Steward C., Subramanian S., Sycamore N., Tracey A., Tromans A., Van Helmond Z., Wall M., Wallis J.M., White S., Whitehead S.L., Wilkinson J.E., Willey D.L., Williams H., Wilming L., Wray P.W., Wu Z., Coulson A., Vaudin M., Sulston J.E., Durbin R.M., Hubbard T., Wooster R., Dunham I., Carter N.P., McVean G., Ross M.T., Harrow J., Olson M.V., Beck S., Rogers J., Bentley D.R.
Nature 441:315-321(2006) [PubMed: 16710414] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[6]Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. expand/collapse author list , Yooseph S., Lu F., Nusskern D.R., Shue B.C., Zheng X.H., Zhong F., Delcher A.L., Huson D.H., Kravitz S.A., Mouchard L., Reinert K., Remington K.A., Clark A.G., Waterman M.S., Eichler E.E., Adams M.D., Hunkapiller M.W., Myers E.W., Venter J.C.
Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[7]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM SCP2).
Tissue: Brain.
[8]Bienvenut W.V.
Submitted (MAR-2005) to UniProtKB
Cited for: PROTEIN SEQUENCE OF 455-462; 512-522 AND 535-546, MASS SPECTROMETRY.
Tissue: B-cell lymphoma.
[9]"Regulation of sterol carrier protein gene expression by the forkhead transcription factor FOXO3a."
Dansen T.B., Kops G.J., Denis S., Jelluma N., Wanders R.J., Bos J.L., Burgering B.M., Wirtz K.W.
J. Lipid Res. 45:81-88(2004) [PubMed: 14563822] [Abstract]
Cited for: ALTERNATIVE PROMOTER USAGE, INDUCTION BY 4-HYDROXY-TAMOXIFEN.
[10]"Mutations in the gene encoding peroxisomal sterol carrier protein X (SCPx) cause leukencephalopathy with dystonia and motor neuropathy."
Ferdinandusse S., Kostopoulos P., Denis S., Rusch H., Overmars H., Dillmann U., Reith W., Haas D., Wanders R.J., Duran M., Marziniak M.
Am. J. Hum. Genet. 78:1046-1052(2006) [PubMed: 16685654] [Abstract]
Cited for: INVOLVEMENT IN LDMN.
[11]"Structure-activity studies of human sterol carrier protein 2."
Seedorf U., Scheek S., Engel T., Steif C., Hinz H.-J., Assmann G.
J. Biol. Chem. 269:2613-2618(1994) [PubMed: 8300590] [Abstract]
Cited for: MUTAGENESIS OF ASN-528 AND GLY-530, FUNCTION.
[12]"Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer."
Rikova K., Guo A., Zeng Q., Possemato A., Yu J., Haack H., Nardone J., Lee K., Reeves C., Li Y., Hu Y., Tan Z., Stokes M., Sullivan L., Mitchell J., Wetzel R., Macneill J., Ren J.M. expand/collapse author list , Yuan J., Bakalarski C.E., Villen J., Kornhauser J.M., Smith B., Li D., Zhou X., Gygi S.P., Gu T.-L., Polakiewicz R.D., Rush J., Comb M.J.
Cell 131:1190-1203(2007) [PubMed: 18083107] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-197 AND TYR-204, MASS SPECTROMETRY.
Tissue: Lung carcinoma.
[13]"Lysine acetylation targets protein complexes and co-regulates major cellular functions."
Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T., Olsen J.V., Mann M.
Science 325:834-840(2009) [PubMed: 19608861] [Abstract]
Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-132; LYS-183; LYS-438 AND LYS-470, MASS SPECTROMETRY.
[14]"Initial characterization of the human central proteome."
Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J.
BMC Syst. Biol. 5:17-17(2011) [PubMed: 21269460] [Abstract]
Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
[15]"NMR determination of the secondary structure and the three-dimensional polypeptide backbone fold of the human sterol carrier protein 2."
Szyperski T., Scheek S., Johansson J., Assmann G., Seedorf U., Wuethrich K.
FEBS Lett. 335:18-26(1993) [PubMed: 8243660] [Abstract]
Cited for: STRUCTURE BY NMR OF SCP2.
[16]"Recognition of a functional peroxisome type 1 target by the dynamic import receptor Pex5p."
Stanley W.A., Filipp F.V., Kursula P., Schueller N., Erdmann R., Schliebs W., Sattler M., Wilmanns M.
Mol. Cell 24:653-663(2006) [PubMed: 17157249] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.3 ANGSTROMS) OF 426-547 IN COMPLEX WITH PEX5, FUNCTION, SUBCELLULAR LOCATION.
[17]"The consensus coding sequences of human breast and colorectal cancers."
Sjoeblom T., Jones S., Wood L.D., Parsons D.W., Lin J., Barber T.D., Mandelker D., Leary R.J., Ptak J., Silliman N., Szabo S., Buckhaults P., Farrell C., Meeh P., Markowitz S.D., Willis J., Dawson D., Willson J.K.V. expand/collapse author list , Gazdar A.F., Hartigan J., Wu L., Liu C., Parmigiani G., Park B.H., Bachman K.E., Papadopoulos N., Vogelstein B., Kinzler K.W., Velculescu V.E.
Science 314:268-274(2006) [PubMed: 16959974] [Abstract]
Cited for: VARIANT [LARGE SCALE ANALYSIS] ASP-155.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U11313 expand/collapse EMBL AC list , U11297, U11299, U11300, U11301, U11302, U11303, U11304, U11305, U11306, U11307, U11308, U11309, U11310, U11311, U11312 Genomic DNA. Translation: AAB41286.1.
M75883 mRNA. Translation: AAA03557.1.
M75884 mRNA. Translation: AAA03558.1. Different initiation.
M55421 mRNA. Translation: AAA03559.1.
S52450 mRNA. Translation: AAB24921.1.
AL445183, AC099677 Genomic DNA. Translation: CAH72590.1.
CH471059 Genomic DNA. Translation: EAX06760.1.
CH471059 Genomic DNA. Translation: EAX06761.1.
BC005911 mRNA. Translation: AAH05911.1.
IPIIPI00026105.
IPI00943320.
PIRB40407.
I38205.
RefSeqNP_001007100.1. NM_001007099.2.
NP_001007101.1. NM_001007100.2.
NP_001007251.1. NM_001007250.2.
NP_002970.2. NM_002979.4.
UniGeneHs.476365.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1QNDNMR-A425-547[»]
2C0LX-ray2.30B426-547[»]
ProteinModelPortalP22307.
SMRP22307. Positions 13-398, 426-547.
ModBaseSearch...

Protein-protein interaction databases

IntActP22307. 5 interactions.
STRINGP22307.

PTM databases

PhosphoSiteP22307.

Polymorphism databases

DMDM2507456.

2D gel databases

REPRODUCTION-2DPAGEIPI00026105.

Proteomic databases

PRIDEP22307.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENST00000371514; ENSP00000360569; ENSG00000116171.
GeneID6342.
KEGGhsa:6342.
UCSCuc001cur.1. human.
uc001cut.1. human.

Organism-specific databases

CTD6342.
GeneCardsGC01P053392.
H-InvDBHIX0000591.
HGNCHGNC:10606. SCP2.
HPAHPA027101.
HPA027135.
HPA027317.
MIM184755. gene.
613724. phenotype.
neXtProtNX_P22307.
Orphanet163684. Leukoencephalopathy - dystonia - motor neuropathy.
PharmGKBPA35014.
GenAtlasSearch...

Phylogenomic databases

eggNOGprNOG10905.
GeneTreeENSGT00530000062928.
HOGENOMHBG567272.
HOVERGENHBG006506.
InParanoidP22307.
OMAPQMFGNA.
OrthoDBEOG40K7ZM.
PhylomeDBP22307.

Enzyme and pathway databases

ReactomeREACT_22258. Metabolism of lipids and lipoproteins.

Gene expression databases

ArrayExpressP22307.
BgeeP22307.
CleanExHS_SCP2.
GenevestigatorP22307.
GermOnlineENSG00000116171. Homo sapiens.

Family and domain databases

InterProIPR003033. SCP2_sterol-bd_dom.
IPR016039. Thiolase-like.
IPR016038. Thiolase-like_subgr.
IPR020615. Thiolase_acyl_enz_int_AS.
IPR020617. Thiolase_C.
IPR020613. Thiolase_CS.
IPR020616. Thiolase_N.
[Graphical view]
Gene3DG3DSA:3.40.47.10. Thiolase-like_subgr. 3 hits.
KOK08764.
PfamPF02036. SCP2. 1 hit.
PF02803. Thiolase_C. 1 hit.
PF00108. Thiolase_N. 1 hit.
[Graphical view]
SUPFAMSSF55718. SCP2. 1 hit.
SSF53901. Thiolase-like. 2 hits.
PROSITEPS00098. THIOLASE_1. 1 hit.
PS00737. THIOLASE_2. 1 hit.
PS00099. THIOLASE_3. False negative.
[Graphical view]
ProtoNetSearch...

Other

NextBio24628.
SOURCESearch...

Entry information

Entry nameNLTP_HUMAN
AccessionPrimary (citable) accession number: P22307
Secondary accession number(s): D3DQ37 expand/collapse secondary AC list , Q15432, Q16622, Q5VVZ1, Q99430
Entry history
Integrated into UniProtKB/Swiss-Prot: August 1, 1991
Last sequence update: November 1, 1997
Last modified: January 25, 2012
This is version 139 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Relevant documents

Human chromosome 1

Human chromosome 1: entries, gene names and cross-references to MIM

Human entries with polymorphisms or disease mutations

List of human entries with polymorphisms or disease mutations

Human polymorphisms and disease mutations

Index of human polymorphisms and disease mutations

MIM cross-references

Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families