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P22004

- BMP6_HUMAN

UniProt

P22004 - BMP6_HUMAN

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Protein
Bone morphogenetic protein 6
Gene
BMP6, VGR
Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 5 out of 5 - Experimental evidence at protein leveli

Functioni

Induces cartilage and bone formation.

GO - Molecular functioni

  1. BMP receptor binding Source: MGI
  2. protein heterodimerization activity Source: MGI
Complete GO annotation...

GO - Biological processi

  1. BMP signaling pathway Source: BHF-UCL
  2. SMAD protein signal transduction Source: UniProtKB
  3. cartilage development Source: UniProtKB-KW
  4. cellular response to mechanical stimulus Source: Ensembl
  5. endochondral ossification Source: Ensembl
  6. eye development Source: Ensembl
  7. growth Source: InterPro
  8. immune response Source: BHF-UCL
  9. inflammatory response Source: Ensembl
  10. kidney development Source: Ensembl
  11. male genitalia development Source: Ensembl
  12. osteoblast differentiation Source: Ensembl
  13. positive regulation of DNA-dependent DNA replication Source: BHF-UCL
  14. positive regulation of aldosterone biosynthetic process Source: UniProtKB
  15. positive regulation of aldosterone secretion Source: Ensembl
  16. positive regulation of bone mineralization Source: BHF-UCL
  17. positive regulation of chondrocyte differentiation Source: Ensembl
  18. positive regulation of endothelial cell differentiation Source: Ensembl
  19. positive regulation of endothelial cell proliferation Source: Ensembl
  20. positive regulation of epithelial cell proliferation Source: BHF-UCL
  21. positive regulation of neuron differentiation Source: Ensembl
  22. positive regulation of osteoblast differentiation Source: BHF-UCL
  23. positive regulation of pathway-restricted SMAD protein phosphorylation Source: UniProtKB
  24. positive regulation of protein secretion Source: BHF-UCL
  25. positive regulation of transcription from RNA polymerase II promoter Source: UniProtKB
  26. response to activity Source: Ensembl
  27. response to glucocorticoid Source: Ensembl
  28. response to iron ion Source: Ensembl
  29. response to magnesium ion Source: Ensembl
  30. response to retinoic acid Source: Ensembl
  31. skeletal system development Source: ProtInc
  32. type B pancreatic cell development Source: BHF-UCL
Complete GO annotation...

Keywords - Molecular functioni

Cytokine, Developmental protein, Growth factor

Keywords - Biological processi

Chondrogenesis, Differentiation, Osteogenesis

Enzyme and pathway databases

SignaLinkiP22004.

Names & Taxonomyi

Protein namesi
Recommended name:
Bone morphogenetic protein 6
Short name:
BMP-6
Alternative name(s):
VG-1-related protein
Short name:
VG-1-R
Short name:
VGR-1
Gene namesi
Name:BMP6
Synonyms:VGR
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 6

Organism-specific databases

HGNCiHGNC:1073. BMP6.

Subcellular locationi

Secreted By similarity

GO - Cellular componenti

  1. cytoplasm Source: Ensembl
  2. extracellular space Source: UniProtKB-KW
  3. membrane-bounded vesicle Source: Ensembl
Complete GO annotation...

Keywords - Cellular componenti

Secreted

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA25383.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2020 Reviewed prediction
Add
BLAST
Propeptidei21 – 374354 Reviewed prediction
PRO_0000033870Add
BLAST
Chaini375 – 513139Bone morphogenetic protein 6
PRO_0000033871Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi241 – 2411N-linked (GlcNAc...) Reviewed prediction
Glycosylationi269 – 2691N-linked (GlcNAc...) Reviewed prediction
Glycosylationi386 – 3861N-linked (GlcNAc...) Reviewed prediction
Glycosylationi404 – 4041N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi412 ↔ 478 By similarity
Disulfide bondi441 ↔ 510 By similarity
Disulfide bondi445 ↔ 512 By similarity
Glycosylationi454 – 4541N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi477 – 477Interchain By similarity

Keywords - PTMi

Cleavage on pair of basic residues, Disulfide bond, Glycoprotein

Proteomic databases

MaxQBiP22004.
PaxDbiP22004.
PRIDEiP22004.

PTM databases

PhosphoSiteiP22004.

Expressioni

Gene expression databases

ArrayExpressiP22004.
BgeeiP22004.
CleanExiHS_BMP6.
GenevestigatoriP22004.

Organism-specific databases

HPAiCAB002773.

Interactioni

Subunit structurei

Interacts with SOSTDC1 By similarity.

Protein-protein interaction databases

BioGridi107122. 5 interactions.
DIPiDIP-5797N.
STRINGi9606.ENSP00000283147.

Structurei

Secondary structure

Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi411 – 4155
Beta strandi418 – 4203
Turni421 – 4255
Turni427 – 4293
Beta strandi430 – 4323
Beta strandi434 – 4374
Beta strandi440 – 4423
Turni451 – 4544
Helixi457 – 46812
Turni470 – 4723
Beta strandi477 – 49115
Beta strandi497 – 51317

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2QCWX-ray2.49A/B382-513[»]
2R52X-ray2.50A/B375-513[»]
2R53X-ray2.10A/B411-513[»]
ProteinModelPortaliP22004.
SMRiP22004. Positions 411-513.

Miscellaneous databases

EvolutionaryTraceiP22004.

Family & Domainsi

Sequence similaritiesi

Belongs to the TGF-beta family.

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiNOG272883.
HOGENOMiHOG000249476.
HOVERGENiHBG004860.
InParanoidiP22004.
KOiK16620.
OMAiWWGLLCS.
OrthoDBiEOG7J9VPQ.
PhylomeDBiP22004.
TreeFamiTF316134.

Family and domain databases

Gene3Di2.10.90.10. 1 hit.
InterProiIPR029034. Cystine-knot_cytokine.
IPR001839. TGF-b_C.
IPR001111. TGF-b_N.
IPR015615. TGF-beta-rel.
IPR017948. TGFb_CS.
[Graphical view]
PANTHERiPTHR11848. PTHR11848. 1 hit.
PfamiPF00019. TGF_beta. 1 hit.
PF00688. TGFb_propeptide. 1 hit.
[Graphical view]
SMARTiSM00204. TGFB. 1 hit.
[Graphical view]
SUPFAMiSSF57501. SSF57501. 1 hit.
PROSITEiPS00250. TGF_BETA_1. 1 hit.
PS51362. TGF_BETA_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P22004-1 [UniParc]FASTAAdd to Basket

« Hide

MPGLGRRAQW LCWWWGLLCS CCGPPPLRPP LPAAAAAAAG GQLLGDGGSP    50
GRTEQPPPSP QSSSGFLYRR LKTQEKREMQ KEILSVLGLP HRPRPLHGLQ 100
QPQPPALRQQ EEQQQQQQLP RGEPPPGRLK SAPLFMLDLY NALSADNDED 150
GASEGERQQS WPHEAASSSQ RRQPPPGAAH PLNRKSLLAP GSGSGGASPL 200
TSAQDSAFLN DADMVMSFVN LVEYDKEFSP RQRHHKEFKF NLSQIPEGEV 250
VTAAEFRIYK DCVMGSFKNQ TFLISIYQVL QEHQHRDSDL FLLDTRVVWA 300
SEEGWLEFDI TATSNLWVVT PQHNMGLQLS VVTRDGVHVH PRAAGLVGRD 350
GPYDKQPFMV AFFKVSEVHV RTTRSASSRR RQQSRNRSTQ SQDVARVSSA 400
SDYNSSELKT ACRKHELYVS FQDLGWQDWI IAPKGYAANY CDGECSFPLN 450
AHMNATNHAI VQTLVHLMNP EYVPKPCCAP TKLNAISVLY FDDNSNVILK 500
KYRNMVVRAC GCH 513
Length:513
Mass (Da):57,226
Last modified:August 1, 1991 - v1
Checksum:i3F19155B36049278
GO

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti257 – 2571R → C.
Corresponds to variant rs10458105 [ dbSNP | Ensembl ].
VAR_047055
Natural varianti343 – 3431A → D in a colorectal cancer sample; somatic mutation. 1 Publication
VAR_036200
Natural varianti476 – 4761P → L in a colorectal cancer sample; somatic mutation. 1 Publication
VAR_036201

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
M60315 mRNA. Translation: AAA36737.1.
AL135778, AL133541 Genomic DNA. Translation: CAI19426.1.
AL133541, AL135778 Genomic DNA. Translation: CAI19472.1.
CCDSiCCDS4503.1.
PIRiB39263. BMHU6.
RefSeqiNP_001709.1. NM_001718.4.
UniGeneiHs.285671.

Genome annotation databases

EnsembliENST00000283147; ENSP00000283147; ENSG00000153162.
GeneIDi654.
KEGGihsa:654.
UCSCiuc003mxu.4. human.

Polymorphism databases

DMDMi115076.

Keywords - Coding sequence diversityi

Polymorphism

Cross-referencesi

Web resourcesi

Wikipedia

Bone morphogenetic protein 6 entry

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
M60315 mRNA. Translation: AAA36737.1 .
AL135778 , AL133541 Genomic DNA. Translation: CAI19426.1 .
AL133541 , AL135778 Genomic DNA. Translation: CAI19472.1 .
CCDSi CCDS4503.1.
PIRi B39263. BMHU6.
RefSeqi NP_001709.1. NM_001718.4.
UniGenei Hs.285671.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
2QCW X-ray 2.49 A/B 382-513 [» ]
2R52 X-ray 2.50 A/B 375-513 [» ]
2R53 X-ray 2.10 A/B 411-513 [» ]
ProteinModelPortali P22004.
SMRi P22004. Positions 411-513.
ModBasei Search...

Protein-protein interaction databases

BioGridi 107122. 5 interactions.
DIPi DIP-5797N.
STRINGi 9606.ENSP00000283147.

PTM databases

PhosphoSitei P22004.

Polymorphism databases

DMDMi 115076.

Proteomic databases

MaxQBi P22004.
PaxDbi P22004.
PRIDEi P22004.

Protocols and materials databases

DNASUi 654.
Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000283147 ; ENSP00000283147 ; ENSG00000153162 .
GeneIDi 654.
KEGGi hsa:654.
UCSCi uc003mxu.4. human.

Organism-specific databases

CTDi 654.
GeneCardsi GC06P007672.
HGNCi HGNC:1073. BMP6.
HPAi CAB002773.
MIMi 112266. gene.
neXtProti NX_P22004.
PharmGKBi PA25383.
GenAtlasi Search...

Phylogenomic databases

eggNOGi NOG272883.
HOGENOMi HOG000249476.
HOVERGENi HBG004860.
InParanoidi P22004.
KOi K16620.
OMAi WWGLLCS.
OrthoDBi EOG7J9VPQ.
PhylomeDBi P22004.
TreeFami TF316134.

Enzyme and pathway databases

SignaLinki P22004.

Miscellaneous databases

ChiTaRSi BMP6. human.
EvolutionaryTracei P22004.
GeneWikii Bone_morphogenetic_protein_6.
GenomeRNAii 654.
NextBioi 2660.
PROi P22004.
SOURCEi Search...

Gene expression databases

ArrayExpressi P22004.
Bgeei P22004.
CleanExi HS_BMP6.
Genevestigatori P22004.

Family and domain databases

Gene3Di 2.10.90.10. 1 hit.
InterProi IPR029034. Cystine-knot_cytokine.
IPR001839. TGF-b_C.
IPR001111. TGF-b_N.
IPR015615. TGF-beta-rel.
IPR017948. TGFb_CS.
[Graphical view ]
PANTHERi PTHR11848. PTHR11848. 1 hit.
Pfami PF00019. TGF_beta. 1 hit.
PF00688. TGFb_propeptide. 1 hit.
[Graphical view ]
SMARTi SM00204. TGFB. 1 hit.
[Graphical view ]
SUPFAMi SSF57501. SSF57501. 1 hit.
PROSITEi PS00250. TGF_BETA_1. 1 hit.
PS51362. TGF_BETA_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Identification of transforming growth factor beta family members present in bone-inductive protein purified from bovine bone."
    Celeste A.J., Iannazzi J.A., Taylor R.C., Hewick R.M., Rosen V., Wang E.A., Wozney J.M.
    Proc. Natl. Acad. Sci. U.S.A. 87:9843-9847(1990) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Tissue: Bone.
  2. "The DNA sequence and analysis of human chromosome 6."
    Mungall A.J., Palmer S.A., Sims S.K., Edwards C.A., Ashurst J.L., Wilming L., Jones M.C., Horton R., Hunt S.E., Scott C.E., Gilbert J.G.R., Clamp M.E., Bethel G., Milne S., Ainscough R., Almeida J.P., Ambrose K.D., Andrews T.D.
    , Ashwell R.I.S., Babbage A.K., Bagguley C.L., Bailey J., Banerjee R., Barker D.J., Barlow K.F., Bates K., Beare D.M., Beasley H., Beasley O., Bird C.P., Blakey S.E., Bray-Allen S., Brook J., Brown A.J., Brown J.Y., Burford D.C., Burrill W., Burton J., Carder C., Carter N.P., Chapman J.C., Clark S.Y., Clark G., Clee C.M., Clegg S., Cobley V., Collier R.E., Collins J.E., Colman L.K., Corby N.R., Coville G.J., Culley K.M., Dhami P., Davies J., Dunn M., Earthrowl M.E., Ellington A.E., Evans K.A., Faulkner L., Francis M.D., Frankish A., Frankland J., French L., Garner P., Garnett J., Ghori M.J., Gilby L.M., Gillson C.J., Glithero R.J., Grafham D.V., Grant M., Gribble S., Griffiths C., Griffiths M.N.D., Hall R., Halls K.S., Hammond S., Harley J.L., Hart E.A., Heath P.D., Heathcott R., Holmes S.J., Howden P.J., Howe K.L., Howell G.R., Huckle E., Humphray S.J., Humphries M.D., Hunt A.R., Johnson C.M., Joy A.A., Kay M., Keenan S.J., Kimberley A.M., King A., Laird G.K., Langford C., Lawlor S., Leongamornlert D.A., Leversha M., Lloyd C.R., Lloyd D.M., Loveland J.E., Lovell J., Martin S., Mashreghi-Mohammadi M., Maslen G.L., Matthews L., McCann O.T., McLaren S.J., McLay K., McMurray A., Moore M.J.F., Mullikin J.C., Niblett D., Nickerson T., Novik K.L., Oliver K., Overton-Larty E.K., Parker A., Patel R., Pearce A.V., Peck A.I., Phillimore B.J.C.T., Phillips S., Plumb R.W., Porter K.M., Ramsey Y., Ranby S.A., Rice C.M., Ross M.T., Searle S.M., Sehra H.K., Sheridan E., Skuce C.D., Smith S., Smith M., Spraggon L., Squares S.L., Steward C.A., Sycamore N., Tamlyn-Hall G., Tester J., Theaker A.J., Thomas D.W., Thorpe A., Tracey A., Tromans A., Tubby B., Wall M., Wallis J.M., West A.P., White S.S., Whitehead S.L., Whittaker H., Wild A., Willey D.J., Wilmer T.E., Wood J.M., Wray P.W., Wyatt J.C., Young L., Younger R.M., Bentley D.R., Coulson A., Durbin R.M., Hubbard T., Sulston J.E., Dunham I., Rogers J., Beck S.
    Nature 425:805-811(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. Cited for: VARIANTS [LARGE SCALE ANALYSIS] ASP-343 AND LEU-476.
  4. "BMP-3 and BMP-6 structures illuminate the nature of binding specificity with receptors."
    Allendorph G.P., Isaacs M.J., Kawakami Y., Izpisua Belmonte J.C., Choe S.
    Biochemistry 46:12238-12247(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.49 ANGSTROMS) OF 382-513.

Entry informationi

Entry nameiBMP6_HUMAN
AccessioniPrimary (citable) accession number: P22004
Secondary accession number(s): Q5TCP3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 1, 1991
Last sequence update: August 1, 1991
Last modified: July 9, 2014
This is version 141 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Human chromosome 6
    Human chromosome 6: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  6. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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