Reviewed,
UniProtKB/Swiss-Prot P21439 (MDR3_HUMAN)
Last modified
June 16, 2009.
Version 102.
History...
Clusters with 100%,
90%,
50% identity |
Documents (5) |
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Names and origin
| Protein names | Recommended name: Multidrug resistance protein 3 EC=3.6.3.44 Alternative name(s): ATP-binding cassette sub-family B member 4 P-glycoprotein 3 | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 1286 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is not processed. |
| Protein existence | Evidence at protein level. |
General annotation (Comments)
| Function | Mediates ATP-dependent export of organic anions and drugs from the cytoplasm. Hydrolyzes ATP with low efficiency. Human MDR3 is not capable of conferring drug resistance. Mediates the translocation of phosphatidylcholine across the canalicular membrane of the hepatocyte. |
| Catalytic activity | ATP + H2O + xenobiotic(In) = ADP + phosphate + xenobiotic(Out). |
| Subcellular location | |
| Involvement in disease | Defects in ABCB4 are the cause of progressive familial intrahepatic cholestasis type 3 (PFIC3) [MIM:602347]. PFIC3 is an autosomal recessive liver disorder presenting with early onset cholestasis that progresses to cirrhosis and liver failure before adulthood. It is characterized by elevated serum gamma-glutamyltransferase levels. Ref.6 Ref.8 Ref.10 Defects in ABCB4 are a cause of intrahepatic cholestasis of pregnancy (ICP) [MIM:147480]; also known as obstetric cholestasis. ICP is a multifactorial liver disorder of pregnancy. It presents during the second or, more commonly, the third trimestre of pregnancy with intense pruritus which becomes more severe with advancing gestation and cholestasis. Cholestasis results from abnormal biliary transport from the liver into the small intestine. ICP causes fetal distress, spontaneous premature delivery and intrauterine death. ICP patients have spontaneous and progressive disappearance of cholestasis after delivery. Ref.7 Ref.12 Ref.13 Genetic variations in ABCB4 may play a role in drug-induced cholestasis causing liver damage. Defects in ABCB4 are a cause of cholelithiasis [MIM:600803]; also known as gallstones. Ref.9 Ref.11 |
| Sequence similarities | Belongs to the ABC transporter family. Multidrug resistance exporter (TC 3.A.1.201) subfamily. [View classification] Contains 2 ABC transmembrane type-1 domains. Contains 2 ABC transporter domains. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Transport |
| Cellular component | Cell membrane Membrane |
| Coding sequence diversity | Alternative splicing Polymorphism |
| Disease | Disease mutation Intrahepatic cholestasis |
| Domain | Repeat Transmembrane |
| Ligand | ATP-binding Nucleotide-binding |
| Molecular function | Hydrolase |
| PTM | Glycoprotein |
| Gene Ontology (GO) | |
| Biological process | lipid metabolic process Traceable author statement. Source: ProtInc response to drugTraceable author statement. Source: ProtInc transportTraceable author statement. Source: ProtInc |
| Cellular component | integral to plasma membrane Traceable author statement. Source: ProtInc membrane fractionTraceable author statement. Source: ProtInc |
| Molecular function | ATP binding Inferred from electronic annotation. Source: UniProtKB-KW xenobiotic-transporting ATPase activityInferred from electronic annotation. Source: EC |
| Complete GO annotation... | |
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: P21439-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: P21439-2) The sequence of this isoform differs from the canonical sequence as follows: 1094-1100: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1286 | 1286 | Multidrug resistance protein 3 | PRO_0000093333 | |||||
Regions | |||||||||
| Topological domain | 1 – 50 | 50 | Cytoplasmic By similarity | ||||||
| Transmembrane | 51 – 73 | 23 | By similarity | ||||||
| Topological domain | 74 – 118 | 45 | Extracellular By similarity | ||||||
| Transmembrane | 119 – 139 | 21 | By similarity | ||||||
| Topological domain | 140 – 188 | 49 | Cytoplasmic By similarity | ||||||
| Transmembrane | 189 – 210 | 22 | By similarity | ||||||
| Topological domain | 211 – 217 | 7 | Extracellular By similarity | ||||||
| Transmembrane | 218 – 238 | 21 | By similarity | ||||||
| Topological domain | 239 – 296 | 58 | Cytoplasmic By similarity | ||||||
| Transmembrane | 297 – 318 | 22 | By similarity | ||||||
| Topological domain | 319 – 332 | 14 | Extracellular By similarity | ||||||
| Transmembrane | 333 – 354 | 22 | By similarity | ||||||
| Topological domain | 355 – 711 | 357 | Cytoplasmic By similarity | ||||||
| Transmembrane | 712 – 732 | 21 | By similarity | ||||||
| Topological domain | 733 – 755 | 23 | Extracellular By similarity | ||||||
| Transmembrane | 756 – 776 | 21 | By similarity | ||||||
| Topological domain | 777 – 831 | 55 | Cytoplasmic By similarity | ||||||
| Transmembrane | 832 – 852 | 21 | By similarity | ||||||
| Topological domain | 853 | 1 | Extracellular By similarity | ||||||
| Transmembrane | 854 – 873 | 20 | By similarity | ||||||
| Topological domain | 874 – 933 | 60 | Cytoplasmic By similarity | ||||||
| Transmembrane | 934 – 956 | 23 | By similarity | ||||||
| Topological domain | 957 – 972 | 16 | Extracellular By similarity | ||||||
| Transmembrane | 973 – 994 | 22 | By similarity | ||||||
| Topological domain | 995 – 1286 | 292 | Cytoplasmic By similarity | ||||||
| Domain | 57 – 359 | 303 | ABC transmembrane type-1 1 | ||||||
| Domain | 394 – 630 | 237 | ABC transporter 1 | ||||||
| Domain | 711 – 999 | 289 | ABC transmembrane type-1 2 | ||||||
| Domain | 1034 – 1279 | 246 | ABC transporter 2 | ||||||
| Nucleotide binding | 429 – 436 | 8 | ATP 1 By similarity | ||||||
| Nucleotide binding | 1069 – 1076 | 8 | ATP 2 By similarity | ||||||
Amino acid modifications | |||||||||
| Glycosylation | 91 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 97 | 1 | N-linked (GlcNAc...) Potential | ||||||
Natural variations | |||||||||
| Alternative sequence | 1094 – 1100 | 7 | Missing in isoform 2. | VSP_023263 | |||||
| Natural variant | 87 | 1 | D → E Ref.14 | VAR_043078 | |||||
| Natural variant | 95 | 1 | P → S Ref.14 | VAR_043079 | |||||
| Natural variant | 138 | 1 | W → R in PFIC3. Ref.8 | VAR_043080 | |||||
| Natural variant | 150 | 1 | R → K in ICP. Ref.12 | VAR_043081 | |||||
| Natural variant | 165 | 1 | F → I in cholelithiasis. Ref.11 | VAR_043082 | |||||
| Natural variant | 175 | 1 | T → A Ref.13 Ref.9 Ref.11 Ref.14 Ref.15 | VAR_023501 | |||||
| Natural variant | 238 | 1 | L → V: dbSNP rs45596335. Ref.2 | VAR_020223 | |||||
| Natural variant | 263 | 1 | I → V: dbSNP rs45547936. Ref.2 | VAR_030763 | |||||
| Natural variant | 301 | 1 | M → T in cholelithiasis. Ref.11 | VAR_043083 | |||||
| Natural variant | 320 | 1 | S → F in ICP and cholelithiasis. | VAR_023502 | |||||
| Natural variant | 346 | 1 | S → I in PFIC3. Ref.8 | VAR_043084 | |||||
| Natural variant | 367 | 1 | I → V Ref.14 | VAR_043085 | |||||
| Natural variant | 395 | 1 | E → G in PFIC3. Ref.8 | VAR_043086 | |||||
| Natural variant | 424 | 1 | T → A in PFIC3. Ref.8 | VAR_043087 | |||||
| Natural variant | 425 | 1 | V → M in PFIC3. Ref.8 | VAR_043088 | |||||
| Natural variant | 450 | 1 | E → G Ref.14 | VAR_043089 | |||||
| Natural variant | 528 | 1 | E → D: dbSNP rs8187797. | VAR_043090 | |||||
| Natural variant | 535 | 1 | G → D in PFIC3. Ref.10 | VAR_043091 | |||||
| Natural variant | 541 | 1 | I → F in PFIC3. Ref.8 | VAR_043092 | |||||
| Natural variant | 546 | 1 | A → D in ICP; disruption of protein trafficking with subsequent lack of functional protein at the cell surface. Ref.7 | VAR_023503 | |||||
| Natural variant | 556 | 1 | L → R in PFIC3. Ref.8 | VAR_043093 | |||||
| Natural variant | 564 | 1 | D → G in PFIC3. Ref.8 | VAR_043094 | |||||
| Natural variant | 590 | 1 | R → Q: dbSNP rs45575636. Ref.11 Ref.14 Ref.15 Ref.2 | VAR_043095 | |||||
| Natural variant | 591 | 1 | L → Q in cholelithiasis. Ref.11 | VAR_043096 | |||||
| Natural variant | 651 | 1 | T → N: dbSNP rs45476795. Ref.2 | VAR_030765 | |||||
| Natural variant | 652 | 1 | R → G: dbSNP rs2230028. Ref.8 Ref.12 Ref.13 Ref.11 Ref.14 Ref.15 Ref.2 | VAR_020225 | |||||
| Natural variant | 711 | 1 | F → S in PFIC3. Ref.8 | VAR_043097 | |||||
| Natural variant | 742 | 1 | G → S Ref.11 | VAR_043098 | |||||
| Natural variant | 762 | 1 | G → E in ICP. Ref.13 | VAR_043099 | |||||
| Natural variant | 764 | 1 | I → L in a heterozygous patient with risperidone-induced cholestasis. Ref.15 | VAR_043100 | |||||
| Natural variant | 775 | 1 | T → M Ref.13 | VAR_043101 | |||||
| Natural variant | 788 | 1 | R → Q Ref.11 Ref.2 | VAR_024359 | |||||
| Natural variant | 934 | 1 | A → T in cholelithiasis. Ref.11 | VAR_043102 | |||||
| Natural variant | 983 | 1 | G → S in PFIC3. Ref.8 | VAR_043103 | |||||
| Natural variant | 1082 | 1 | L → Q in a heterozygous patient with amoxicillin/clavulanic acid-induced cholestasis. Ref.15 | VAR_043104 | |||||
| Natural variant | 1161 | 1 | Missing in cholelithiasis. | VAR_043105 | |||||
| Natural variant | 1168 | 1 | P → S in cholelithiasis. Ref.9 Ref.11 | VAR_023504 | |||||
Experimental info | |||||||||
| Sequence conflict | 62 – 72 | 11 | IMAIAHGSGLP → RGSSRVDLQAC Ref.3 | ||||||
Sequences
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References
| [1] | "Sequence of mdr3 cDNA encoding a human P-glycoprotein." van der Bliek A.M., Kooiman P.M., Schneider C., Borst P. Gene 71:401-411(1988) [PubMed: 2906314] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2). |
| [2] | NIEHS SNPs program Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], VARIANTS VAL-238; VAL-263; ASP-528; GLN-590; ASN-651; GLY-652 AND GLN-788. |
| [3] | "Characterization of the promoter region of the human MDR3 P-glycoprotein gene." Smit J.J., Mol C.A., van Deemter L., Wagenaar E., Schinkel A.H., Borst P. Biochim. Biophys. Acta 1261:44-56(1995) [PubMed: 7893760] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 1-72. Tissue: Liver. |
| [4] | "The human mdr3 gene encodes a novel P-glycoprotein homologue and gives rise to alternatively spliced mRNAs in liver." van der Bliek A.M., Baas F., ten Houte de Lange T., Kooiman P.M., van der Velde-Koerts T., Borst P. EMBO J. 6:3325-3331(1987) [PubMed: 2892668] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 856-1286 (ISOFORM 1), ALTERNATIVE SPLICING. |
| [5] | "Structure of the human MDR3 gene and physical mapping of the human MDR locus." Lincke C.R., Smit J.J.M., van der Velde-Koerts T., Borst P. J. Biol. Chem. 266:5303-5310(1991) [PubMed: 2002063] [Abstract] Cited for: GENE STRUCTURE. |
| [6] | "Mutations in the MDR3 gene cause progressive familial intrahepatic cholestasis." de Vree J.M.L., Jacquemin E., Sturm E., Cresteil D., Bosma P.J., Aten J., Deleuze J.-F., Desrochers M., Burdelski M., Bernard O., Oude Elferink R.P.J., Hadchouel M. Proc. Natl. Acad. Sci. U.S.A. 95:282-287(1998) [PubMed: 9419367] [Abstract] Cited for: INVOLVEMENT IN PFIC3. |
| [7] | "Heterozygous MDR3 missense mutation associated with intrahepatic cholestasis of pregnancy: evidence for a defect in protein trafficking." Dixon P.H., Weerasekera N., Linton K.J., Donaldson O., Chambers J., Egginton E., Weaver J., Nelson-Piercy C., de Swiet M., Warnes G., Elias E., Higgins C.F., Johnston D.G., McCarthy M.I., Williamson C. Hum. Mol. Genet. 9:1209-1217(2000) [PubMed: 10767346] [Abstract] Cited for: VARIANT ICP ASP-546, CHARACTERIZATION OF VARIANT ICP ASP-546. |
| [8] | "The wide spectrum of multidrug resistance 3 deficiency: from neonatal cholestasis to cirrhosis of adulthood." Jacquemin E., De Vree J.M.L., Cresteil D., Sokal E.M., Sturm E., Dumont M., Scheffer G.L., Paul M., Burdelski M., Bosma P.J., Bernard O., Hadchouel M., Elferink R.P. Gastroenterology 120:1448-1458(2001) [PubMed: 11313315] [Abstract] Cited for: VARIANTS PFIC3 ARG-138; ILE-346; GLY-395; ALA-424; MET-425; PHE-541; ARG-556; GLY-564; SER-711 AND SER-983, VARIANT GLY-652. |
| [9] | "MDR3 gene defect in adults with symptomatic intrahepatic and gallbladder cholesterol cholelithiasis." Rosmorduc O., Hermelin B., Poupon R. Gastroenterology 120:1459-1467(2001) [PubMed: 11313316] [Abstract] Cited for: VARIANTS CHOLELITHIASIS PHE-320 AND SER-1168, VARIANT ALA-175. |
| [10] | "A multidrug resistance 3 gene mutation causing cholelithiasis, cholestasis of pregnancy, and adulthood biliary cirrhosis." Lucena J.-F., Herrero J.I., Quiroga J., Sangro B., Garcia-Foncillas J., Zabalegui N., Sola J., Herraiz M., Medina J.F., Prieto J. Gastroenterology 124:1037-1042(2003) [PubMed: 12671900] [Abstract] Cited for: VARIANT PFIC3 ASP-535. |
| [11] | "ABCB4 gene mutation-associated cholelithiasis in adults." Rosmorduc O., Hermelin B., Boelle P.Y., Parc R., Taboury J., Poupon R. Gastroenterology 125:452-459(2003) [PubMed: 12891548] [Abstract] Cited for: VARIANTS CHOLELITHIASIS ILE-165; THR-301; PHE-320; GLN-591; THR-934 AND SER-1168, VARIANTS ALA-175; ASP-528; GLN-590; GLY-652; SER-742 AND GLN-788. |
| [12] | "ABCB4 gene sequence variation in women with intrahepatic cholestasis of pregnancy." Muellenbach R., Linton K.J., Wiltshire S., Weerasekera N., Chambers J., Elias E., Higgins C.F., Johnston D.G., McCarthy M.I., Williamson C. J. Med. Genet. 40:E70-E70(2003) [PubMed: 12746424] [Abstract] Cited for: VARIANT ICP LYS-150, VARIANT GLY-652. |
| [13] | "Sequence analysis of bile salt export pump (ABCB11) and multidrug resistance p-glycoprotein 3 (ABCB4, MDR3) in patients with intrahepatic cholestasis of pregnancy." Pauli-Magnus C., Lang T., Meier Y., Zodan-Marin T., Jung D., Breymann C., Zimmermann R., Kenngott S., Beuers U., Reichel C., Kerb R., Penger A., Meier P.J., Kullak-Ublick G.A. Pharmacogenetics 14:91-102(2004) [PubMed: 15077010] [Abstract] Cited for: VARIANTS ALA-175; ASP-528; GLY-652 AND MET-775, VARIANTS ICP PHE-320 AND GLU-762. |
| [14] | "Genetic variability, haplotype structures, and ethnic diversity of hepatic transporters MDR3 (ABCB4) and bile salt export pump (ABCB11)." Lang T., Haberl M., Jung D., Drescher A., Schlagenhaufer R., Keil A., Mornhinweg E., Stieger B., Kullak-Ublick G.A., Kerb R. Drug Metab. Dispos. 34:1582-1599(2006) [PubMed: 16763017] [Abstract] Cited for: VARIANTS GLU-87; SER-95; ALA-175; VAL-367; GLY-450; GLN-590 AND GLY-652. |
| [15] | "Mutations and polymorphisms in the bile salt export pump and the multidrug resistance protein 3 associated with drug-induced liver injury." Lang C., Meier Y., Stieger B., Beuers U., Lang T., Kerb R., Kullak-Ublick G.A., Meier P.J., Pauli-Magnus C. Pharmacogenet. Genomics 17:47-60(2007) [PubMed: 17264802] [Abstract] Cited for: VARIANTS ALA-175; GLN-590; GLY-652; LEU-764 AND GLN-1082, INVOLVEMENT IN DRUG-INDUCED CHOLESTASIS. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| M23234 mRNA. Translation: AAA36207.1. EF034088 Genomic DNA. Translation: ABJ53424.1. Z35284 mRNA. Translation: CAA84542.1. X06181 mRNA. Translation: CAA29547.1. | |
| IPI | IPI00042932. IPI00218731. |
| PIR | DVHU3. JS0051. |
| RefSeq | NP_061337.1. |
| UniGene | Hs.654403 |
3D structure databases | |
| HSSP | HSSP built from PDB template 1MT0 based on UniProtKB P08716. |
| ModBase | Search... |
Protein family/group databases | |
| TCDB | 3.A.1.201.3. ATP-binding cassette (ABC) superfamily. |
Proteomic databases | |
| PRIDE | P21439. |
Genome annotation databases | |
| Ensembl | ENSG00000005471. Homo sapiens. [Contig view] |
| GeneID | 5244. |
Organism-specific databases | |
| GeneCards | GC07M086869. |
| HGNC | HGNC:45. ABCB4. |
| HPA | CAB004498. |
| MIM | 147480. phenotype. 171060. gene. 600803. phenotype. 602347. phenotype. |
| Orphanet | 69663. Cholelithiasis with ABCB4 gene mutation. 172. Cholestasis, progressive familial intrahepatic. 79305. Cholestasis, progressive familial intrahepatic 3. 69665. Intrahepatic cholestasis of pregnancy. |
| PharmGKB | PA268. |
| GenAtlas | Search... |
Phylogenomic databases | |
| HOVERGEN | P21439. |
| OMA | P21439. ANISMGI. |
Enzyme and pathway databases | |
| BRENDA | 3.6.3.44. 247. |
Gene expression databases | |
| ArrayExpress | P21439. |
| Bgee | P21439. |
| CleanEx | HS_ABCB4. |
| GermOnline | ENSG00000005471. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR001140. ABC_TM_transpt. IPR003439. ABC_transporter-like. IPR017871. ABC_transporter_CS. IPR017940. ABC_transporter_type1. IPR003593. ATPase_AAA+_core. [Graphical view] |
| Pfam | PF00664. ABC_membrane. 2 hits. PF00005. ABC_tran. 2 hits. [Graphical view] |
| ProDom | PD000006. ABC_transporter. 2 hits. [Graphical view] [Entries sharing at least one domain] |
| SMART | SM00382. AAA. 2 hits. [Graphical view] |
| PROSITE | PS50929. ABC_TM1F. 2 hits. PS00211. ABC_TRANSPORTER_1. 2 hits. PS50893. ABC_TRANSPORTER_2. 2 hits. [Graphical view] |
| ProtoNet | Search... |
Other Resources | |
| NextBio | 20258. |
| SOURCE | Search... |
Entry information
| Entry name | MDR3_HUMAN | ||||||||
| Accession | Primary (citable) accession number: P21439 Secondary accession number(s): A0A2V7, Q14813 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HPI (Human Proteome Initiative) | ||||||||
Relevant documents
| Human chromosome 7 Human chromosome 7: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with


