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Protein

Uncharacterized protein YdfC

Gene

ydfC

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG11302-MONOMER.
ECOL316407:JW1565-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YdfC
Gene namesi
Name:ydfC
Synonyms:rzpQ
Ordered Locus Names:b1573, JW1565
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11302. ydfC.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7272Uncharacterized protein YdfCPRO_0000168954Add
BLAST

Proteomic databases

PaxDbiP21418.
PRIDEiP21418.

Interactioni

Protein-protein interaction databases

BioGridi4263288. 9 interactions.
STRINGi511145.b1573.

Structurei

3D structure databases

ProteinModelPortaliP21418.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000050870.
OMAiCEMHKTE.
OrthoDBiEOG6VB70P.

Sequencei

Sequence statusi: Complete.

P21418-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQKREPVIIA PDYTDDELYE WMRQKINAAQ DLKWANEARA KQAENLSALE
60 70
QDITNLEKAA ALSIARMITY PR
Length:72
Mass (Da):8,350
Last modified:May 1, 1991 - v1
Checksum:iAB920A3BB418A0AF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X07465 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAC74646.1.
AP009048 Genomic DNA. Translation: BAA15278.1.
PIRiD30383. Q4ECD8.
RefSeqiNP_416091.1. NC_000913.3.
WP_001171942.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74646; AAC74646; b1573.
BAA15278; BAA15278; BAA15278.
GeneIDi946107.
KEGGiecj:JW1565.
eco:b1573.
PATRICi32118446. VBIEscCol129921_1643.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X07465 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAC74646.1.
AP009048 Genomic DNA. Translation: BAA15278.1.
PIRiD30383. Q4ECD8.
RefSeqiNP_416091.1. NC_000913.3.
WP_001171942.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP21418.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4263288. 9 interactions.
STRINGi511145.b1573.

Proteomic databases

PaxDbiP21418.
PRIDEiP21418.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74646; AAC74646; b1573.
BAA15278; BAA15278; BAA15278.
GeneIDi946107.
KEGGiecj:JW1565.
eco:b1573.
PATRICi32118446. VBIEscCol129921_1643.

Organism-specific databases

EchoBASEiEB1279.
EcoGeneiEG11302. ydfC.

Phylogenomic databases

HOGENOMiHOG000050870.
OMAiCEMHKTE.
OrthoDBiEOG6VB70P.

Enzyme and pathway databases

BioCyciEcoCyc:EG11302-MONOMER.
ECOL316407:JW1565-MONOMER.

Miscellaneous databases

PROiP21418.

Family and domain databases

ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Identification and sequence of gene dicB: translation of the division inhibitor from an in-phase internal start."
    Cam K., Bejar S., Gil D., Bouche J.-P.
    Nucleic Acids Res. 16:6327-6338(1988) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYDFC_ECOLI
AccessioniPrimary (citable) accession number: P21418
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 1, 1991
Last sequence update: May 1, 1991
Last modified: January 20, 2016
This is version 96 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.